Clc03G07345 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G07345
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 7577807 .. 7578064 (+)
RNA-Seq ExpressionClc03G07345
SyntenyClc03G07345
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGAAGAAGTGGGTGCGAAGAAAAGCAAGAGCCATGGGAATAACGCTACCAGGTGGGCGATTTTCAAGCGATCCTTGAGGAGAGAATCGCGAAAAATGAAGCTATTGGGCTCCGGGTTCAAGTGGAAAAGACTGACGAATTTGCAGATTTCTTTTTTGGATAATTTTCTTTTCAAGATTGTTTCTATGTTGGAGGGTGTAGTTCTTGTCTCTACACTCTGTTTCTTCTTCCTCTGTTTTGGCTGTCACTTTTGA

mRNA sequence

ATGGAGGAAGAAGTGGGTGCGAAGAAAAGCAAGAGCCATGGGAATAACGCTACCAGGTGGGCGATTTTCAAGCGATCCTTGAGGAGAGAATCGCGAAAAATGAAGCTATTGGGCTCCGGGTTCAAGTGGAAAAGACTGACGAATTTGCAGATTTCTTTTTTGGATAATTTTCTTTTCAAGATTGTTTCTATGTTGGAGGGTGTAGTTCTTGTCTCTACACTCTGTTTCTTCTTCCTCTGTTTTGGCTGTCACTTTTGA

Coding sequence (CDS)

ATGGAGGAAGAAGTGGGTGCGAAGAAAAGCAAGAGCCATGGGAATAACGCTACCAGGTGGGCGATTTTCAAGCGATCCTTGAGGAGAGAATCGCGAAAAATGAAGCTATTGGGCTCCGGGTTCAAGTGGAAAAGACTGACGAATTTGCAGATTTCTTTTTTGGATAATTTTCTTTTCAAGATTGTTTCTATGTTGGAGGGTGTAGTTCTTGTCTCTACACTCTGTTTCTTCTTCCTCTGTTTTGGCTGTCACTTTTGA

Protein sequence

MEEEVGAKKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGVVLVSTLCFFFLCFGCHF
Homology
BLAST of Clc03G07345 vs. NCBI nr
Match: KAG6583910.1 (hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 74/85 (87.06%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1   MEEEVGAKKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFK 60
           M+EEVGAK+SK HG++AT WAIFKRSLRRES KMKLLGS FKWKRLTNLQISF+DN LFK
Sbjct: 36  MDEEVGAKRSKGHGSSATMWAIFKRSLRRESSKMKLLGSAFKWKRLTNLQISFMDNLLFK 95

Query: 61  IVSMLEGVVLVSTLCFFFLCFGCHF 86
           IVSMLEGVVLV+TLCFFFLCFGCHF
Sbjct: 96  IVSMLEGVVLVATLCFFFLCFGCHF 120

BLAST of Clc03G07345 vs. NCBI nr
Match: KAG7012520.1 (hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121.7 bits (304), Expect = 3.0e-24
Identity = 64/78 (82.05%), Postives = 69/78 (88.46%), Query Frame = 0

Query: 1  MEEEVGAKKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFK 60
          M+E+VGAK SKSHGN ATRWAIFKRSLRRESRKMKLLGS FKWKRLTNLQISF+DN LFK
Sbjct: 1  MDEKVGAKNSKSHGNQATRWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNILFK 60

Query: 61 IVSMLEGVVLVSTLCFFF 79
           VS+LEGVVL +T  F F
Sbjct: 61 FVSVLEGVVLENTRRFGF 78

BLAST of Clc03G07345 vs. NCBI nr
Match: KAG7019527.1 (hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 119.4 bits (298), Expect = 1.5e-23
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1   MEEEVGAKKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFK 60
           M+EEVGAK+SK HG++AT WAIFKRSLRRESRKMKLLGS FKWKRLTNLQISF+DN LFK
Sbjct: 47  MDEEVGAKRSKGHGSSATMWAIFKRSLRRESRKMKLLGSAFKWKRLTNLQISFMDNLLFK 106

Query: 61  IVSMLEGVVLVSTLCFFFLCF 82
           IVSMLEGVVL++      LC+
Sbjct: 107 IVSMLEGVVLMNEHFELHLCW 127

BLAST of Clc03G07345 vs. NCBI nr
Match: EOY27743.1 (Uncharacterized protein TCM_029517 [Theobroma cacao])

HSP 1 Score: 89.0 bits (219), Expect = 2.2e-14
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 8   KKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEG 67
           KK K       RW +FKR +++ES + K LGS FKWKRL N+Q+SF+D+ LF+I S+LE 
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEA 172

Query: 68  VVLVSTLCFFFLCFGCHF 86
           + LV+TLCFF+LC GCHF
Sbjct: 173 IFLVATLCFFYLCCGCHF 189

BLAST of Clc03G07345 vs. NCBI nr
Match: XP_017978435.1 (PREDICTED: uncharacterized protein LOC18596529 [Theobroma cacao])

HSP 1 Score: 87.0 bits (214), Expect = 8.3e-14
Identity = 41/67 (61.19%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 19 RWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGVVLVSTLCFFF 78
          RW +FKR +++ES + K LGS FKWKRL N+Q+SF+D+ LF+I S+LE + LV+TLCFF+
Sbjct: 6  RWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFY 65

Query: 79 LCFGCHF 86
          LC GCHF
Sbjct: 66 LCCGCHF 71

BLAST of Clc03G07345 vs. ExPASy TrEMBL
Match: A0A061GEB5 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 44/78 (56.41%), Postives = 58/78 (74.36%), Query Frame = 0

Query: 8   KKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEG 67
           KK K       RW +FKR +++ES + K LGS FKWKRL N+Q+SF+D+ LF+I S+LE 
Sbjct: 113 KKKKEVMGGTKRWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEA 172

Query: 68  VVLVSTLCFFFLCFGCHF 86
           + LV+TLCFF+LC GCHF
Sbjct: 173 IFLVATLCFFYLCCGCHF 189

BLAST of Clc03G07345 vs. ExPASy TrEMBL
Match: A0A6J1B6L1 (uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC110424571 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.0e-14
Identity = 41/67 (61.19%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 19 RWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGVVLVSTLCFFF 78
          RW +FKR +++ES + K LGS FKWKRL N+Q+SF+D+ LF+I S+LE + LV+TLCFF+
Sbjct: 6  RWVLFKRLIKKESWRWKFLGSAFKWKRL-NIQLSFVDDVLFRIASVLEAIFLVATLCFFY 65

Query: 79 LCFGCHF 86
          LC GCHF
Sbjct: 66 LCCGCHF 71

BLAST of Clc03G07345 vs. ExPASy TrEMBL
Match: A0A1R3FVP9 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.5e-13
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 0

Query: 9  KSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGV 68
          K+ S  +++ RW +FKR L +ES + K LGS FKWKRL N+Q+SF D+ LF+I S+LE +
Sbjct: 3  KTSSSSSSSKRWVLFKR-LIKESWRWKFLGSAFKWKRL-NIQLSFFDDVLFRIASVLEAI 62

Query: 69 VLVSTLCFFFLCFGCHF 86
           LV+TLCFF+LC GCHF
Sbjct: 63 YLVATLCFFYLCCGCHF 77

BLAST of Clc03G07345 vs. ExPASy TrEMBL
Match: A0A5D2NM64 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G045600v1 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 0

Query: 19 RWAIFKRSLRRESRKMKLLGSGFKWKRLTNL--QISFLDNFLFKIVSMLEGVVLVSTLCF 78
          RW +FKR +++E  + K LGS FKWK++ +L  Q+SF+D+ LFKI S+LE + LVSTLCF
Sbjct: 8  RWMLFKRLMKKELWRWKFLGSAFKWKKIPSLTIQLSFIDDVLFKIASVLEAIFLVSTLCF 67

Query: 79 FFLCFGCHF 86
          F+LC GCHF
Sbjct: 68 FYLCCGCHF 76

BLAST of Clc03G07345 vs. ExPASy TrEMBL
Match: A0A1R3I7M5 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24713 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 41/76 (53.95%), Postives = 59/76 (77.63%), Query Frame = 0

Query: 14 GNNATRW----AIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGVV 73
          G +++ W     + KR +++ES + K+LGSGFKWKRL N+Q+SF+D+ LF+I S+LE + 
Sbjct: 3  GTSSSSWKGWVVLLKRLIKKESWRWKILGSGFKWKRL-NIQLSFIDDVLFRIASVLEAIY 62

Query: 74 LVSTLCFFFLCFGCHF 86
          LV+TLCFF+LC GCHF
Sbjct: 63 LVATLCFFYLCCGCHF 77

BLAST of Clc03G07345 vs. TAIR 10
Match: AT5G46295.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G06475.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 5.0e-09
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 0

Query: 21 AIFKRSLRRESRKMKLLGSGFKWKRLTNLQISFLDNFLFKIVSMLEGVVLVSTLCFFFLC 80
          +I+K +  R   K   LG G KWKRL NL+++FL+   ++I+S++E +VLVS L FFFLC
Sbjct: 8  SIWKTTKERTRLKFLGLGGGLKWKRL-NLKMTFLETLRYRIMSIIEAMVLVSKLAFFFLC 67

Query: 81 FGCHF 86
           GC F
Sbjct: 68 CGCKF 71

BLAST of Clc03G07345 vs. TAIR 10
Match: AT1G06475.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 29/84 (34.52%), Postives = 48/84 (57.14%), Query Frame = 0

Query: 2  EEEVGAKKSKSHGNNATRWAIFKRSLRRESRKMKLLGSGFKWKRLTNLQIS-FLDNFLFK 61
          EE+V AK++++          ++R     S       S  KWKR+  + ++  +D  ++K
Sbjct: 19 EEQVTAKETQT----------WQRLRNLFSTSSSSSSSSAKWKRVEIIMLTEIVDGVVYK 78

Query: 62 IVSMLEGVVLVSTLCFFFLCFGCH 85
          ++ ++E  VLVSTLCFF+LC GCH
Sbjct: 79 VMYVVEAFVLVSTLCFFYLCCGCH 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6583910.12.3e-3287.06hypothetical protein SDJN03_19842, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012520.13.0e-2482.05hypothetical protein SDJN02_25272, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7019527.11.5e-2377.78hypothetical protein SDJN02_18488, partial [Cucurbita argyrosperma subsp. argyro... [more]
EOY27743.12.2e-1456.41Uncharacterized protein TCM_029517 [Theobroma cacao][more]
XP_017978435.18.3e-1461.19PREDICTED: uncharacterized protein LOC18596529 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061GEB51.1e-1456.41Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_029517 PE=4 SV=1[more]
A0A6J1B6L14.0e-1461.19uncharacterized protein LOC110424571 OS=Herrania umbratica OX=108875 GN=LOC11042... [more]
A0A1R3FVP91.5e-1357.14Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_38300 PE=4 SV=1[more]
A0A5D2NM644.4e-1357.97Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A10G045600v1 P... [more]
A0A1R3I7M54.4e-1353.95Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_24713 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G46295.15.0e-0949.23unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G06475.13.4e-0534.52unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33726TRANSMEMBRANE PROTEINcoord: 17..85
NoneNo IPR availablePANTHERPTHR33726:SF3TRANSMEMBRANE PROTEINcoord: 17..85

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G07345.1Clc03G07345.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane