Clc03G07280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G07280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	ClcChr03: 7533045 .. 7535256 (+)
RNA-Seq Expression	Clc03G07280
Synteny	Clc03G07280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCCTCAACAATGGCTCTGTCCTCACCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCTCCCCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGTTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCATCGGAGATTCACCGGTGACTACGGTTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGAGCTTGAAGTCATCCACTCTAGGTAACAAATCATCAGGCTACCATACTATTCTTCCATAATTTAACACAAAAAAAGAAAAAAGAAAAGAAAATATAAGTTTTTTATGGTAATTTTGATGACTATTTGATTTTCCGTTTTATTTTCTTAAAAATTTAGTTTTATAAACACTGATTTCCTTGTCTTATTCTCTTCTAGATAAATGTGTTCAAAACTCAAACCCAATTTTTAAAATTTAATGCTTTGGTTTTGTAACCTAATTTGTGGCAATGTTTTCAAAATTGTCAAAGTTTCACAAACTAAAAAGTAATATAGTTTTTAAAATTTTAATTTATGTTTTTTAAAAAGTCAAGTTTCACAAACTAAAAAATAATATAGTTTTTAAAATTTTAATTTTTGTCTTTTAAATTTTGATTAGAATTAAAATAATGTCATCTTGAAAAAAATCGATAAAGATCCTTGTAAAGAAATTTGTGAAAATACTCACAAATTTCAAAAACCATATGATGCAGAGTTTTAAAAAACTTATATAAGATCAAATAAGAAATTCAATTTCTAAATTAAAAATGTCTAAACTTAATAAACTGAATTAATTAAGACATACCATCATGATGCAAGAAGGCAGAAGTTAAAAGGATCTCTCACCCACATTTTGTGTTTAATATATGTTTTAACCTCATCAAATATTATGAAAATTGGAAGTTCATTAAATACAAAACAGAAGGTTGAAAATTTATTAGATACACTAGAAAAATTAGAATTTTTTAGACAAAAAAAATTAAACTTAGTAAATATAATACTGAAGATTTAAGAGATGATTTAGTAGATACCTTTAAACTTCAAATACCGCTACACAATTCTTAAATTTAAGACTCTATTTAATAACCATTTTAAAAAAAAAAATTTAATGAAATTCATATTTGCTAATTTTCTCTCAAATTTATAATTATGGTTTTTCATTTATAAATAAACATTTGAATTCATAGTCAAATTCTAAAAATAAAAATTAATTTGTGAAAATAAAAACAAACTTTTTTGAAAATTATTTTATTTTTTATTTAGTTTTCAAACTTTGACTTAGTTTTTAAAAATATTAGATAATAGAACATATAAACTTAAGAAAAAGGAAGTAATGTTTATAAATTTTAATTTTAAAAAACTAATAAATAAATGGGTAATTATTTTAAATTGCAAAATTGCATAAATATTTTCAAATATAACAAAATGTGTTTATTTATTTGATAGCAATATTTATAACAGTATATTAATAATATTTTGTTATATATGTAAATAGTTTGATATTTTTTTATATTTAAAAATATCCAAAATAAATAACTAAATGGTTATTACCTTAAAAACAAAAATGGTAAATTTAACCAAAAAAAAGTGGAAATAAATAAAGTAGAGGATGTCTCATAATTGACTTGGCGGTTGGTTCAGGTGGGCCATGCTCGGAGCGTTCGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAGCGGCGTGAAGTTTGGAGAAGCAGTGTGGTTCAAGGCGGGTTCACAAATCTTCAGCGAAGGTGGGCTGGACTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCACGGGGGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA

mRNA sequence

ATGGCGGCCTCAACAATGGCTCTGTCCTCACCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCTCCCCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGTTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCATCGGAGATTCACCGGTGACTACGGTTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGGGCCATGCTCGGAGCGTTCGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAGCGGCGTGAAGTTTGGAGAAGCAGTGTGGTTCAAGGCGGGTTCACAAATCTTCAGCGAAGGTGGGCTGGACTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCACGGGGGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA

Coding sequence (CDS)

ATGGCGGCCTCAACAATGGCTCTGTCCTCACCCTCACTCGCCGGAAAGGCGGTGAAACTTACGCCCTCCCCCCCTGAGCTTCTCGGCAATGGCAGAGTCAGTATGAGGAAATCCGTTGCCAAGCCTGTTTCTTCTGGAAGCCCATGGTACGGACCCGACCGTGTTAAGTATTTGGGGCCATTCTCCGGCGAGCCTCCGTCCTACCTCATCGGAGATTCACCGGTGACTACGGTTGGGATACTGCCGGACTTTCCGCAGACCCTGAGACCTTCGCCAAGAACCGTGGGCCATGCTCGGAGCGTTCGGCTGCGTGTTCCCGGAGCTTCTTTCCCGCAGCGGCGTGAAGTTTGGAGAAGCAGTGTGGTTCAAGGCGGGTTCACAAATCTTCAGCGAAGGTGGGCTGGACTACTTAGGGAACCCGAGCTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCTCAGGTGGTTCTCACGGGGGCCGTCGAGGGATACCGTATCGCCGGTGGCCCACTTGGGAAGTGACCGACCCGATTTACCCGGGTGGGAGCTTTGACCCGTTGGGGCTTGCAGATGACCCGGAAGCCTTTGCAGAGCTGAAAGTGAAGGAGCTGAAGAATGGAAGATTGGCGATGTTCTCTATGTTTGGATTCTTTGTTCAAGCCATCGTCACCGGAAAGGGCCCACTTGAGAATCTTGCCGACCACCTTGCTGACCCAGTCAACAACAATGCTTGGGCCTATGCTACCAACTTTGTTCCTGGAAAATGA

Protein sequence

MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGPFSGEPPSYLIGDSPVTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREVWRSSVVQGGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGSHGGRRGIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK

Homology

[Close]

BLAST of Clc03G07280 vs. NCBI nr
Match: CAD1839186.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 342.0 bits (876), Expect = 4.3e-90
Identity = 181/266 (68.05%), Postives = 200/266 (75.19%), Query Frame = 0


Query: 3   ASTMALSSPSLAGKAVKLTPS-PPELLGNGRVSMRKSVAKP---VSSGSPWYGPDRVKYL 62
           A+TMALSSPSLAG AVKL PS   ++LG GRV+MRK+V +P    +SGSPWYGPDRVKYL
Sbjct: 2   AATMALSSPSLAGTAVKLAPSAASDILGEGRVTMRKTVGRPKPASASGSPWYGPDRVKYL 61

Query: 63  GPFSGEPPSYLIGDSPVTTVGILPDFPQTLRPSPRT--------VGHARSVRLRVPGASF 122
           GPFSGEPPSYL G+ P          P T RPS RT         G   +  LRVPGA+ 
Sbjct: 62  GPFSGEPPSYLTGEFPGDYGWDTAGCPPTPRPSRRTASWRSSTAAGRCSARSLRVPGAAG 121

Query: 123 PQRREVWRSSVVQGGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGSHGGRRGIPYRRW 182
            QRREV R  VVQG   +LQR   GL  +P+LDPR +H   LG+ G  HG RRG+P  R 
Sbjct: 122 AQRREVRRGRVVQGRRADLQRGRPGLPGQPQLDPRAEHPGDLGVPGDPHGRRRGVPGGRG 181

Query: 183 PTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 242
           P  EVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 241

Query: 243 ENLADHLADPVNNNAWAYATNFVPGK 257
           ENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 242 ENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. NCBI nr
Match: XP_022142169.1 (chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia])

HSP 1 Score: 300.4 bits (768), Expect = 1.4e-77
Identity = 172/268 (64.18%), Postives = 185/268 (69.03%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRK V+K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 121 LSRNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 180

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWAYATNFVPGK 257
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Clc03G07280 vs. NCBI nr
Match: XP_022139935.1 (chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia])

HSP 1 Score: 298.1 bits (762), Expect = 7.1e-77
Identity = 171/267 (64.04%), Postives = 184/267 (68.91%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRK V+K VSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 145

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 146 LSRNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 205

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 206 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 265

Query: 241 PLENLADHLADPVNNNAWAYATNFVPG 256
           PLENLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 PLENLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of Clc03G07280 vs. NCBI nr
Match: XP_022142175.1 (chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia])

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-76
Identity = 172/276 (62.32%), Postives = 183/276 (66.30%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           M+ASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRKSV+K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MSASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQ---- 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP+    
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 -----RREVWRSSVVQ----GGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGS---HG 180
                   VW  +  Q    GG   L      L+    +       S L +        G
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGN--PSLIHAQSIXSLIHAQSILAIWASQVVLMG 180

Query: 181 GRRGIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 240
              G      P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV
Sbjct: 181 AVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 240

Query: 241 QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of Clc03G07280 vs. NCBI nr
Match: XP_008444193.1 (PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >KAA0053968.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa] >TYK20653.1 chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 297.0 bits (759), Expect = 1.6e-76
Identity = 170/268 (63.43%), Postives = 183/268 (68.28%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PEL GN RV+MRKS AK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 121 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 180

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWAYATNFVPGK 257
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot
Match: P27493 (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB21 PE=2 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 2.4e-75
Identity = 160/268 (59.70%), Postives = 180/268 (67.16%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAA+TMALSSPS AG+AVKL+PS PE+ GNGRVSMRK+VAKPV+S SPWYGPDRVKYLGP
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGE PSYL G+ P      T G+  D     +     V H R   L   G  FP   E+
Sbjct: 61  FSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +           G   G    
Sbjct: 121 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA 180

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWAYATNFVPGK 257
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot
Match: P09756 (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.0e-73
Identity = 163/267 (61.05%), Postives = 179/267 (67.04%), Query Frame = 0


Query: 2   AASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGPF 61
           AAS+MALSSPSLAGKAVKL PS PE+   GRVSMRK+V K VSSGSPWYGPDRVKYLGPF
Sbjct: 3   AASSMALSSPSLAGKAVKLGPSAPEV---GRVSMRKTVTKQVSSGSPWYGPDRVKYLGPF 62

Query: 62  SGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREVW 121
           SGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+ 
Sbjct: 63  SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---ELL 122

Query: 122 RSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYRR 181
             + V+ G     +  + +  E  LD    P   H+  +     +     G   G     
Sbjct: 123 SRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAG 182

Query: 182 WPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 241
            P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP
Sbjct: 183 GPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGP 242

Query: 242 LENLADHLADPVNNNAWAYATNFVPGK 257
           LENLADHLA PVNNNAWAYATNFVPGK
Sbjct: 243 LENLADHLAGPVNNNAWAYATNFVPGK 263

[Close]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot
Match: P27495 (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB40 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 8.5e-73
Identity = 160/270 (59.26%), Postives = 178/270 (65.93%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRK--SVAKPVSSGSPWYGPDRVKYL 60
           MAASTMALSSPS AGKAVKL+PS  E+ GNG+V+MRK  S AK VSSGSPWYGPDRVKYL
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRR 120
           GPFSGE PSYL G+ P      T G+  D     +     V H R   L   G  FP   
Sbjct: 61  GPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP--- 120

Query: 121 EVWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIP 180
           E+   + V+ G     +  + +  E  LD    P   H+  +           G   G  
Sbjct: 121 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 180

Query: 181 YRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 240
               P  EV DP+YPGGSFDPLGLA+DPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 181 VAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240

Query: 241 KGPLENLADHLADPVNNNAWAYATNFVPGK 257
           KGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 KGPLENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot
Match: P27491 (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.9e-72
Identity = 158/270 (58.52%), Postives = 176/270 (65.19%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSV--AKPVSSGSPWYGPDRVKYL 60
           M ASTMALSSPS AG AVKL+PS  E+ GNG+  MRK+V  AKPVSSGSPWYGPDRVKYL
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRR 120
           GPFSGE PSYL G+ P      T G+  D     +     V H R   L   G  FP   
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFP--- 120

Query: 121 EVWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIP 180
           E+   + V+ G     +  + +  E  LD    P   H+  +           G   G  
Sbjct: 121 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYR 180

Query: 181 YRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 240
               P  EVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 181 VAGGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240

Query: 241 KGPLENLADHLADPVNNNAWAYATNFVPGK 257
           KGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct: 241 KGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot
Match: P04783 (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB91R PE=3 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.5e-72
Identity = 157/270 (58.15%), Postives = 177/270 (65.56%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSV--AKPVSSGSPWYGPDRVKYL 60
           MAA+TMALSSPS AGKAVK +PS  E+ GNG+ +MRK+V  AKPVSSGSPWYGPDRVKYL
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYGPDRVKYL 60

Query: 61  GPFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRR 120
           GPFSGE PSYL G+ P      T  +  D     +     V H R   L   G  FP   
Sbjct: 61  GPFSGEAPSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFP--- 120

Query: 121 EVWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIP 180
           E+   + V+ G     +  + +  E  LD    P   H+  +           G   G  
Sbjct: 121 ELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYR 180

Query: 181 YRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 240
               P  EV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTG
Sbjct: 181 VAGGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 240

Query: 241 KGPLENLADHLADPVNNNAWAYATNFVPGK 257
           KGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct: 241 KGPLENLADHLADPVNNNAWSYATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. ExPASy TrEMBL
Match: A0A6V7Q8M3 (Chlorophyll a-b binding protein, chloroplastic OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS22397 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 2.1e-90
Identity = 181/266 (68.05%), Postives = 200/266 (75.19%), Query Frame = 0


Query: 3   ASTMALSSPSLAGKAVKLTPS-PPELLGNGRVSMRKSVAKP---VSSGSPWYGPDRVKYL 62
           A+TMALSSPSLAG AVKL PS   ++LG GRV+MRK+V +P    +SGSPWYGPDRVKYL
Sbjct: 2   AATMALSSPSLAGTAVKLAPSAASDILGEGRVTMRKTVGRPKPASASGSPWYGPDRVKYL 61

Query: 63  GPFSGEPPSYLIGDSPVTTVGILPDFPQTLRPSPRT--------VGHARSVRLRVPGASF 122
           GPFSGEPPSYL G+ P          P T RPS RT         G   +  LRVPGA+ 
Sbjct: 62  GPFSGEPPSYLTGEFPGDYGWDTAGCPPTPRPSRRTASWRSSTAAGRCSARSLRVPGAAG 121

Query: 123 PQRREVWRSSVVQGGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGSHGGRRGIPYRRW 182
            QRREV R  VVQG   +LQR   GL  +P+LDPR +H   LG+ G  HG RRG+P  R 
Sbjct: 122 AQRREVRRGRVVQGRRADLQRGRPGLPGQPQLDPRAEHPGDLGVPGDPHGRRRGVPGGRG 181

Query: 183 PTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPL 242
           P  EVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+
Sbjct: 182 PLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPI 241

Query: 243 ENLADHLADPVNNNAWAYATNFVPGK 257
           ENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 242 ENLADHLADPVNNNAWAYATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. ExPASy TrEMBL
Match: A0A6J1CKT5 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012353 PE=3 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 7.0e-78
Identity = 172/268 (64.18%), Postives = 185/268 (69.03%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRK V+K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 121 LSRNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 180

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWAYATNFVPGK 257
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Clc03G07280 vs. ExPASy TrEMBL
Match: A0A6J1CDN4 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010725 PE=3 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 3.5e-77
Identity = 171/267 (64.04%), Postives = 184/267 (68.91%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRK V+K VSSGSPWYGPDRVKYLGP
Sbjct: 26  MAASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKFVSKSVSSGSPWYGPDRVKYLGP 85

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 86  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 145

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 146 LSRNGVKFGEAVWFKAGSQIFNEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 205

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 206 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 265

Query: 241 PLENLADHLADPVNNNAWAYATNFVPG 256
           PLENLADHLADPVNNNAWAYATNFVPG
Sbjct: 266 PLENLADHLADPVNNNAWAYATNFVPG 289

[Close]

BLAST of Clc03G07280 vs. ExPASy TrEMBL
Match: A0A5D3DAQ5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00370 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 7.7e-77
Identity = 170/268 (63.43%), Postives = 183/268 (68.28%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSPSLAGKAVKLTPS PEL GN RV+MRKS AK VSSGSPWYGPDRVKYLGP
Sbjct: 1   MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP   E+
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKHSSHLGLSGGSH----GGRRGIPYR 180
              + V+ G     +  + +  E  LD    P   H+  +     S     G   G    
Sbjct: 121 LSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA 180

Query: 181 RWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240
             P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG
Sbjct: 181 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 240

Query: 241 PLENLADHLADPVNNNAWAYATNFVPGK 257
           PLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 PLENLADHLADPVNNNAWAYATNFVPGK 265

[Close]

BLAST of Clc03G07280 vs. ExPASy TrEMBL
Match: A0A6J1CK60 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111012357 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 7.7e-77
Identity = 172/276 (62.32%), Postives = 183/276 (66.30%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           M+ASTMALSSPSLAGKAVKLTPS PELLGNGRVSMRKSV+K VSSGSPWYGPDRVKYLGP
Sbjct: 1   MSASTMALSSPSLAGKAVKLTPSSPELLGNGRVSMRKSVSKSVSSGSPWYGPDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQ---- 120
           FSGEPPSYL G+ P      T G+  D     +     V H+R   L   G  FP+    
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSR 120

Query: 121 -----RREVWRSSVVQ----GGFTNLQRRWAGLLREPELDPRPKHSSHLGLSGGS---HG 180
                   VW  +  Q    GG   L      L+    +       S L +        G
Sbjct: 121 NGVKFGEAVWFKAGSQIFNEGGLDYLGN--PSLIHAQSIXSLIHAQSILAIWASQVVLMG 180

Query: 181 GRRGIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 240
              G      P  EVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV
Sbjct: 181 AVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 240

Query: 241 QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct: 241 QAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 274

[Close]

BLAST of Clc03G07280 vs. TAIR 10
Match: AT1G29930.1 (chlorophyll A/B binding protein 1 )

HSP 1 Score: 261.5 bits (667), Expect = 6.9e-70
Identity = 156/273 (57.14%), Postives = 179/273 (65.57%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAVKL+P+  E+LG+GRV+MRK+VAKP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRRE 120
           PFSGE PSYL G+ P      T G+  D     R     V H+R   L   G  FP   E
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP---E 120

Query: 121 VWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKH--------SSHLGLSGGSHGGRR 180
           +   + V+ G     +  + +  +  LD    P   H        ++ + L G   G R 
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 GIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240
                  P  E  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAI
Sbjct: 181 A---GNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240

Query: 241 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. TAIR 10
Match: AT1G29910.1 (chlorophyll A/B binding protein 3 )

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-69
Identity = 155/273 (56.78%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P+  E+LG+GRV+MRK+VAKP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRRE 120
           PFSGE PSYL G+ P      T G+  D     R     V H+R   L   G  FP   E
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP---E 120

Query: 121 VWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKH--------SSHLGLSGGSHGGRR 180
           +   + V+ G     +  + +  +  LD    P   H        ++ + L G   G R 
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 GIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240
                  P  E  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAI
Sbjct: 181 A---GNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240

Query: 241 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. TAIR 10
Match: AT1G29920.1 (chlorophyll A/B-binding protein 2 )

HSP 1 Score: 259.6 bits (662), Expect = 2.6e-69
Identity = 155/273 (56.78%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVS-SGSPWYGPDRVKYLG 60
           MAASTMALSSP+ AGKAV L+P+  E+LG+GRV+MRK+VAKP   SGSPWYG DRVKYLG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRRE 120
           PFSGE PSYL G+ P      T G+  D     R     V H+R   L   G  FP   E
Sbjct: 61  PFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP---E 120

Query: 121 VWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKH--------SSHLGLSGGSHGGRR 180
           +   + V+ G     +  + +  +  LD    P   H        ++ + L G   G R 
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 GIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240
                  P  E  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAI
Sbjct: 181 A---GNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240

Query: 241 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           VTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 VTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267

[Close]

BLAST of Clc03G07280 vs. TAIR 10
Match: AT2G34430.1 (light-harvesting chlorophyll-protein complex II subunit B1 )

HSP 1 Score: 256.5 bits (654), Expect = 2.2e-68
Identity = 152/272 (55.88%), Postives = 174/272 (63.97%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVSSGSPWYGPDRVKYLGP 60
           MAASTMALSSP+L GKAVKL+P+  E+ G GR++MRK+      SGSPWYG DRVKYLGP
Sbjct: 1   MAASTMALSSPALTGKAVKLSPAASEVFGTGRITMRKASKPTGPSGSPWYGSDRVKYLGP 60

Query: 61  FSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRREV 120
           FSGEPPSYL G+ P      T G+  D     R     V H+R   L   G  FP   E+
Sbjct: 61  FSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP---EL 120

Query: 121 WRSSVVQGGFTNLQRRWAGLLREPELD----PRPKH--------SSHLGLSGGSHGGRRG 180
              + V+ G     +  + +  +  LD    P   H        ++ + L G   G R  
Sbjct: 121 LARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA 180

Query: 181 IPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240
                 P  E  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAIV
Sbjct: 181 ---GDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 240

Query: 241 TGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           TGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 TGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

[Close]

BLAST of Clc03G07280 vs. TAIR 10
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2 )

HSP 1 Score: 255.4 bits (651), Expect = 4.9e-68
Identity = 155/273 (56.78%), Postives = 178/273 (65.20%), Query Frame = 0


Query: 1   MAASTMALSSPSLAGKAVKLTPSPPELLGNGRVSMRKSVAKPVS-SGSPWYGPDRVKYLG 60
           MA+STMALSSP+ AGKAVK  P+  ++LG+GRV+MRK+VAKP   SGSPWYG DRVKYLG
Sbjct: 1   MASSTMALSSPAFAGKAVK--PAASDVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLG 60

Query: 61  PFSGEPPSYLIGDSP----VTTVGILPDFPQTLRPSPRTVGHARSVRLRVPGASFPQRRE 120
           PFSGEPPSYL G+ P      T G+  D     R     V H+R   L   G  FP   E
Sbjct: 61  PFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFP---E 120

Query: 121 VWRSSVVQGGFTNLQRRWAGLLREPELD----PRPKH--------SSHLGLSGGSHGGRR 180
           +   + V+ G     +  + +  +  LD    P   H        ++ + L G   G R 
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 GIPYRRWPTWEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240
                  P  E  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFFVQAI
Sbjct: 181 A---GDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAI 240

Query: 241 VTGKGPLENLADHLADPVNNNAWAYATNFVPGK 257
           VTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct: 241 VTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

The following BLAST results are available for this feature:

BLAST of Clc03G07280 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD1839186.1	4.3e-90	68.05	unnamed protein product [Ananas comosus var. bracteatus]	[more]
XP_022142169.1	1.4e-77	64.18	chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia]	[more]
XP_022139935.1	7.1e-77	64.04	chlorophyll a-b binding protein 3, chloroplastic-like [Momordica charantia]	[more]
XP_022142175.1	1.6e-76	62.32	chlorophyll a-b binding protein of LHCII type 1-like [Momordica charantia]	[more]
XP_008444193.1	1.6e-76	63.43	PREDICTED: chlorophyll a-b binding protein of LHCII type 1-like [Cucumis melo] >...	[more]

BLAST of Clc03G07280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27493	2.4e-75	59.70	Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P09756	1.0e-73	61.05	Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max OX=3847 GN=CAB3 ...	[more]
P27495	8.5e-73	59.26	Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum OX=4097 G...	[more]
P27491	1.9e-72	58.52	Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P04783	5.5e-72	58.15	Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. OX=4104 GN=CAB...	[more]

BLAST of Clc03G07280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6V7Q8M3	2.1e-90	68.05	Chlorophyll a-b binding protein, chloroplastic OS=Ananas comosus var. bracteatus...	[more]
A0A6J1CKT5	7.0e-78	64.18	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1CDN4	3.5e-77	64.04	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5D3DAQ5	7.7e-77	63.43	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1CK60	7.7e-77	62.32	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]

BLAST of Clc03G07280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G29930.1	6.9e-70	57.14	chlorophyll A/B binding protein 1	[more]
AT1G29910.1	2.6e-69	56.78	chlorophyll A/B binding protein 3	[more]
AT1G29920.1	2.6e-69	56.78	chlorophyll A/B-binding protein 2	[more]
AT2G34430.1	2.2e-68	55.88	light-harvesting chlorophyll-protein complex II subunit B1	[more]
AT2G34420.1	4.9e-68	56.78	photosystem II light harvesting complex gene B1B2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 152..253 e-value: 3.0E-34 score: 120.5
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 174..222 e-value: 9.4E-17 score: 62.0
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 1..83
None	No IPR available	PANTHER	PTHR21649:SF88	CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC	coord: 171..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..253
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..83
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 171..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G07280.2	Clc03G07280.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009521	photosystem
cellular_component	GO:0016020	membrane
molecular_function	GO:0005488	binding