Clc03G07010 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G07010
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 7099945 .. 7100292 (+)
RNA-Seq ExpressionClc03G07010
SyntenyClc03G07010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATTTCAACATGATACTATACTTTTCACATTCATCTTCCTCCTTGCCATGTCCTCTCCAAACACGCTCATGGCAACCTCTAGAATCATGTTTGATTCTGTACTTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTTGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCATCCTAAGTTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

mRNA sequence

ATGGCATTTCAACATGATACTATACTTTTCACATTCATCTTCCTCCTTGCCATGTCCTCTCCAAACACGCTCATGGCAACCTCTAGAATCATGTTTGATTCTGTACTTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTTGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCATCCTAAGTTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

Coding sequence (CDS)

ATGGCATTTCAACATGATACTATACTTTTCACATTCATCTTCCTCCTTGCCATGTCCTCTCCAAACACGCTCATGGCAACCTCTAGAATCATGTTTGATTCTGTACTTGCTCCAACAACTTTGGAAGCTACAATTCCTACTTTTAAAGAATCTATTGTTGAAGTACCTGAGTCATCAATCTCCCTTCCTCCAAGCTCTTACGAGTTTACTACTTTTGATCCTAATGGAATGGGTGCAAGGGCACCAATCCCTGCCTCAACCATCCTAAGTTGCATGCCCAAAGGACCGATCAGATGGTCTGCTCCAAATCCAAAACATAACAATATGTTGGAATCAACTATGTGTTAA

Protein sequence

MAFQHDTILFTFIFLLAMSSPNTLMATSRIMFDSVLAPTTLEATIPTFKESIVEVPESSISLPPSSYEFTTFDPNGMGARAPIPASTILSCMPKGPIRWSAPNPKHNNMLESTMC
Homology
BLAST of Clc03G07010 vs. NCBI nr
Match: KAE8649709.1 (hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothetical protein Csa_012458, partial [Cucumis sativus] >KGN55007.2 hypothetical protein Csa_012551, partial [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 77/110 (70.00%), Postives = 88/110 (80.00%), Query Frame = 0

Query: 1   MAFQHDTILFTFIFLLAMSSPNTLMATSRIMFDSVLAPTTL-EATIPTFKESIVEVPE-- 60
           MAFQHD + FTF FL+AMSSP+ +MAT+R M D    PTTL E+TI  F+ESI EVPE  
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIMATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPSSYEFTTFDPNGMGARAPIPASTILSCMPKGPIRWSAPNPKHN 108
           SSISLPP+S EF +FDPNGMGARAP+PAS +L C PKGPI WSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPAS-LLDCKPKGPIAWSAPNPKHN 109

BLAST of Clc03G07010 vs. NCBI nr
Match: KAE8649707.1 (hypothetical protein Csa_012825 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 3.8e-30
Identity = 76/110 (69.09%), Postives = 88/110 (80.00%), Query Frame = 0

Query: 1   MAFQHDTILFTFIFLLAMSSPNTLMATSRIMFDSVLAPTTL-EATIPTFKESIVEVPE-- 60
           MAFQHD + FTF FL+AMSSP+ ++AT+R M D    PTTL E+TI  F+ESI EVPE  
Sbjct: 1   MAFQHDVVFFTFFFLIAMSSPSKIIATTRGMLDLAQPPTTLEESTIRNFRESIAEVPESS 60

Query: 61  SSISLPPSSYEFTTFDPNGMGARAPIPASTILSCMPKGPIRWSAPNPKHN 108
           SSISLPP+S EF +FDPNGMGARAP+PAS +L C PKGPI WSAPNPKHN
Sbjct: 61  SSISLPPTSDEFISFDPNGMGARAPLPAS-LLDCKPKGPIAWSAPNPKHN 109

BLAST of Clc03G07010 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 0

Query: 12  FIFLLAMSSPNTLMATSRIMFDSVLAPTTLEATIPTFKESIVEVPESSISLPPSSYEFTT 71
           F  L+ +SSP+T++ATSR M    LA  T E+            P+  +  PP+S +F T
Sbjct: 13  FFLLIVISSPSTIIATSRHM----LALDTKESP-----------PQPPMDKPPTSNDFDT 72

Query: 72  FD-PNGMGARAPIPASTILSCMPKGPIRWSAPNPKHNNM 110
              PNG  A  P+P S + SC PKGP+RWS+P+P  NN+
Sbjct: 73  LSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPIRNNL 96

BLAST of Clc03G07010 vs. NCBI nr
Match: KAG6573847.1 (hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0

Query: 15  LLAMSSPNTLM-------ATSRIMFDSVLAPTTLEATIPTFKESIVEVPESSISLPPSSY 74
           +++ SSP+T+        +TS   FD    P+T EAT        V    S+I + P+S 
Sbjct: 17  MISNSSPSTVSFPVIPTPSTSTTTFDGESTPSTYEAT-------TVVGSGSAIFMSPTSN 76

Query: 75  EFTTFD-PNGMGARAPIPASTILSCMPKGPIRWSAPNPKHNNM-LESTMC 116
           +F  F+ PNGM A+ P+    I SC PKG +R+SAP+ + N++ L S +C
Sbjct: 77  DFVAFEVPNGMDAKPPMSNRVIRSCKPKGRMRYSAPSDRRNSLPLVSIVC 119

BLAST of Clc03G07010 vs. NCBI nr
Match: TYK09256.1 (hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 1.6e-04
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 1   MAFQHDTILFTFIFLLAMSSPNTLMATSRIMF-------DSVLAPTTL-----EATIPTF 60
           MA     +LF    +LA++S +T MATSR M         S  APT +      A+ P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  KES--IVEVPESSISLPPSSYEFTTFD-PNGMGARAPIPASTILSCMPKGPIRWSAPNPK 109
            E+  +     SS S+PPS  +F  F+ P+ + A  P P   I SC PKG +R+SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

BLAST of Clc03G07010 vs. ExPASy TrEMBL
Match: A0A5D3CFX3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002500 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 7.9e-05
Identity = 44/123 (35.77%), Postives = 63/123 (51.22%), Query Frame = 0

Query: 1   MAFQHDTILFTFIFLLAMSSPNTLMATSRIMF-------DSVLAPTTL-----EATIPTF 60
           MA     +LF    +LA++S +T MATSR M         S  APT +      A+ P  
Sbjct: 1   MALHRAPLLFFLFLVLALASSSTTMATSRAMLFIAPTPTMSTQAPTLIVDAKPSASSPPL 60

Query: 61  KES--IVEVPESSISLPPSSYEFTTFD-PNGMGARAPIPASTILSCMPKGPIRWSAPNPK 109
            E+  +     SS S+PPS  +F  F+ P+ + A  P P   I SC PKG +R+SAP+ +
Sbjct: 61  SEATLVAGFGSSSTSMPPSFGDFVAFEVPSEVSANPPTPDWMIRSCKPKGRMRYSAPSDR 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8649709.11.3e-3070.00hypothetical protein Csa_012565, partial [Cucumis sativus] >KAE8649711.1 hypothe... [more]
KAE8649707.13.8e-3069.09hypothetical protein Csa_012825 [Cucumis sativus][more]
KAG6595583.15.4e-0841.41hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6573847.11.6e-0436.36hypothetical protein SDJN03_27734, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK09256.11.6e-0435.77hypothetical protein E5676_scaffold475G002500 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFX37.9e-0535.77Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G07010.2Clc03G07010.2mRNA