Clc03G06920 (gene) Watermelon (cordophanus) v2

Overview
NameClc03G06920
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr03: 7039284 .. 7039586 (+)
RNA-Seq ExpressionClc03G06920
SyntenyClc03G06920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCAACAATAACAACAACCACCACCACCTAACGCCTTCCGCCCAACCATCGCCGCCGCTAACCCCATTTTCAGCGATTGCGCCGCCGCCCTTCGGCCGTATTTCTAGACCCCAAATTCAAATTACTCTGCACACCATTTATGAAGACGAAACCGAAGCCAAAATCTGGCGTCGCCATTGTTACCATCGTAAACAAGCTTCTTCTTCCTCTTTCTCCTCGGCTCTCTCTTGTTTTCGTCCTCTTCGATCACTTAAATGTTCTTGA

mRNA sequence

ATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCAACAATAACAACAACCACCACCACCTAACGCCTTCCGCCCAACCATCGCCGCCGCTAACCCCATTTTCAGCGATTGCGCCGCCGCCCTTCGGCCGTATTTCTAGACCCCAAATTCAAATTACTCTGCACACCATTTATGAAGACGAAACCGAAGCCAAAATCTGGCGTCGCCATTGTTACCATCGTAAACAAGCTTCTTCTTCCTCTTTCTCCTCGGCTCTCTCTTGTTTTCGTCCTCTTCGATCACTTAAATGTTCTTGA

Coding sequence (CDS)

ATGAGTTTAAGGCTCATATATCCCATCGCACAAGAAATGGCCAACAATAACAACAACCACCACCACCTAACGCCTTCCGCCCAACCATCGCCGCCGCTAACCCCATTTTCAGCGATTGCGCCGCCGCCCTTCGGCCGTATTTCTAGACCCCAAATTCAAATTACTCTGCACACCATTTATGAAGACGAAACCGAAGCCAAAATCTGGCGTCGCCATTGTTACCATCGTAAACAAGCTTCTTCTTCCTCTTTCTCCTCGGCTCTCTCTTGTTTTCGTCCTCTTCGATCACTTAAATGTTCTTGA

Protein sequence

MSLRLIYPIAQEMANNNNNHHHLTPSAQPSPPLTPFSAIAPPPFGRISRPQIQITLHTIYEDETEAKIWRRHCYHRKQASSSSFSSALSCFRPLRSLKCS
Homology
BLAST of Clc03G06920 vs. NCBI nr
Match: KAE8653296.1 (hypothetical protein Csa_023338 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.9e-25
Identity = 74/100 (74.00%), Postives = 78/100 (78.00%), Query Frame = 0

Query: 1   MSLRLIYPIAQEMANNNNNHHHLTPSAQPSPPLTPFSAIAPPPFGRISRPQIQITLHTIY 60
           MSLRLIYPIAQEMANNN     LTPS+QPS PLT FSAIAPP F   SRP IQITL+TIY
Sbjct: 1   MSLRLIYPIAQEMANNNTT--TLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIY 60

Query: 61  EDETEAKIWRRHCYHRKQASSSSFSSALSCFRPLRSLKCS 101
           E+ETE KI    C    QA SSSFSSALSCFRPLRS+KCS
Sbjct: 61  EEETEVKI----C----QAPSSSFSSALSCFRPLRSVKCS 90

BLAST of Clc03G06920 vs. NCBI nr
Match: KAG6583881.1 (hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-22
Identity = 68/109 (62.39%), Postives = 78/109 (71.56%), Query Frame = 0

Query: 1   MSLRLIYPIAQEMANNNNNHHHLTP----SAQPSPPLTPFSAIAPPPFGRISRPQIQITL 60
           MS RL+YPI+QEM NNNN+   + P    S Q SPPLT FSAIAPP  G ISR QIQ+TL
Sbjct: 1   MSPRLVYPISQEMPNNNNSPKPIAPNPRSSGQASPPLTRFSAIAPPRSGGISRTQIQVTL 60

Query: 61  HTIYEDETEAKIW-----RRHCYHRKQASSSSFSSALSCFRPLRSLKCS 101
            TIYEDE+E ++      RRHCY RK + S   S+ALSCFRPLRSLKCS
Sbjct: 61  QTIYEDESEDRMCRRRRRRRHCYDRKPSFS---SAALSCFRPLRSLKCS 106

BLAST of Clc03G06920 vs. NCBI nr
Match: KAA0054012.1 (hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK20698.1 hypothetical protein E5676_scaffold480G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 1.6e-16
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 17  NNNHHHLTPSAQPSPPLTPFSAIAPPPFGRISRPQIQITLHTIYEDETEAKIWRRHCYHR 76
           NNN+  LTPSAQPS PLT FSAI PP F   SRPQIQITL+TIYE+ETE K     C   
Sbjct: 4   NNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKF----C--- 63

Query: 77  KQASSSSFSSALSCFRPLRSLKCS 101
            QASSSS SSALS FRPL S+KCS
Sbjct: 64  -QASSSSVSSALSYFRPLGSVKCS 79

BLAST of Clc03G06920 vs. ExPASy TrEMBL
Match: A0A0A0M102 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.3e-19
Identity = 60/84 (71.43%), Postives = 64/84 (76.19%), Query Frame = 0

Query: 17  NNNHHHLTPSAQPSPPLTPFSAIAPPPFGRISRPQIQITLHTIYEDETEAKIWRRHCYHR 76
           NNN   LTPS+QPS PLT FSAIAPP F   SRP IQITL+TIYE+ETE KI    C   
Sbjct: 3   NNNTTTLTPSSQPSTPLTRFSAIAPPRFSCASRPHIQITLYTIYEEETEVKI----C--- 62

Query: 77  KQASSSSFSSALSCFRPLRSLKCS 101
            QA SSSFSSALSCFRPLRS+KCS
Sbjct: 63  -QAPSSSFSSALSCFRPLRSVKCS 78

BLAST of Clc03G06920 vs. ExPASy TrEMBL
Match: A0A5D3DAX8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00920 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.8e-17
Identity = 58/84 (69.05%), Postives = 62/84 (73.81%), Query Frame = 0

Query: 17  NNNHHHLTPSAQPSPPLTPFSAIAPPPFGRISRPQIQITLHTIYEDETEAKIWRRHCYHR 76
           NNN+  LTPSAQPS PLT FSAI PP F   SRPQIQITL+TIYE+ETE K     C   
Sbjct: 4   NNNNTTLTPSAQPSTPLTRFSAIVPPRFSCASRPQIQITLYTIYEEETEVKF----C--- 63

Query: 77  KQASSSSFSSALSCFRPLRSLKCS 101
            QASSSS SSALS FRPL S+KCS
Sbjct: 64  -QASSSSVSSALSYFRPLGSVKCS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8653296.11.9e-2574.00hypothetical protein Csa_023338 [Cucumis sativus][more]
KAG6583881.12.0e-2262.39hypothetical protein SDJN03_19813, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054012.11.6e-1669.05hypothetical protein E6C27_scaffold318G00660 [Cucumis melo var. makuwa] >TYK2069... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M1028.3e-1971.43Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G534770 PE=4 SV=1[more]
A0A5D3DAX87.8e-1769.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..40

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc03G06920.2Clc03G06920.2mRNA