Clc03G06615 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G06615
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II D2 protein
Location	ClcChr03: 6415037 .. 6415983 (+)
RNA-Seq Expression	Clc03G06615
Synteny	Clc03G06615

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTATAGCCGTTAGTAAATTTACCAAAGATGAAAATGATTTATTCAATATTATGGATGATTCGTTATGGAGAGACCACTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTCATCGGAGGTTGATTTATTAGTACAACCATTATAGCTTCATGGTATACCATGAATTGGCAAGTTCCTGTTCAAAAGGATGCAACTTCTCAACCATTGCAGTTTCGACTCCTACTAATAGTTTAGCCCACTCTTTGTTCTTACTATGTGGTCATGAAGCATAAGGAGATTTTATTCGTTGGTTGCTCTCCACAGTACTTTCAGACTAATAAGTTTCATGTTACGTCAATTTGAACTTCCTCGGTTTGTTCAACTGCGACCTTATAATGCCATCGCATTCTCGGGCCCAATTGTTGTTTTTATTTCTATGTTCATGATTTCTCTACTAGGTCCGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGTATAGTAGCTGTATTTCAATTCATCCTCTTTTTCCAAGGGATTCATAATTGTGATTTAGTTAGCATTTAAAATTTCATATCTAATGATACTTTTTTTTTTTTTTTGGTTAGGGATAGTAATAGCACTTGTTATTTCATATACTTGGACATTGAAAATCAAAATTTTGAGATTGACAATGATTCTTCTTTTGTAAGTGAAATAGAAAGTTCTTTTTATCGTAACTCTACTTTCTAAGAGTGGTGATTCCCACCATGATTGTTACATGTATTATACTAAATATAGTTGAAATAATCACATTAATAGTTGCATTGACCGTTATCTTCAAGCTCAAATCTATATTGATATTTACATTTTAAGTGGTAGTCACACTTACCATTATAGTAATAGTTACATTTATAGTTATATTTATGGTGAAGGTGAAAATAGTAGTGAAAGTGAGGGTTTCATATAA

mRNA sequence

ATGACTATAGCCGTTAGTAAATTTACCAAAGATGAAAATGATTTATTCAATATTATGGATGATTCGTTATGGAGAGACCACTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTCATCGGAGCTTCATGGTATACCATGAATTGGCAAGTTCCTGTTCAAAAGGATGCAACTTCTCAACCATTGCATACTTTCAGACTAATAAGTTTCATGTTACGTCAATTTGAACTTCCTCGGTTTGTTCAACTGCGACCTTATAATGCCATCGCATTCTCGGGCCCAATTGTTGTTTTTATTTCTATGTTCATGATTTCTCTACTAGGTCCGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGGATAGTAATAGCACTTGTTATTTCATATACTTGGACATTGAAAATCAAAATTTTGAGATTGACAATGATTCTTCTTTTTTGCATTGACCGTTATCTTCAAGCTCAAATCTATATTGATATTTACATTTTAAGTGGTAGTCACACTTACCATTATAGTAATAGTTACATTTATAGTTATATTTATGGTGAAGGTGAAAATAGTAGTGAAAGTGAGGGTTTCATATAA

Coding sequence (CDS)

ATGACTATAGCCGTTAGTAAATTTACCAAAGATGAAAATGATTTATTCAATATTATGGATGATTCGTTATGGAGAGACCACTTCGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTTGTCATCGGAGCTTCATGGTATACCATGAATTGGCAAGTTCCTGTTCAAAAGGATGCAACTTCTCAACCATTGCATACTTTCAGACTAATAAGTTTCATGTTACGTCAATTTGAACTTCCTCGGTTTGTTCAACTGCGACCTTATAATGCCATCGCATTCTCGGGCCCAATTGTTGTTTTTATTTCTATGTTCATGATTTCTCTACTAGGTCCGTCTGGTTGGTTCTTTGTGCCTAGTTTTGGGATAGTAATAGCACTTGTTATTTCATATACTTGGACATTGAAAATCAAAATTTTGAGATTGACAATGATTCTTCTTTTTTGCATTGACCGTTATCTTCAAGCTCAAATCTATATTGATATTTACATTTTAAGTGGTAGTCACACTTACCATTATAGTAATAGTTACATTTATAGTTATATTTATGGTGAAGGTGAAAATAGTAGTGAAAGTGAGGGTTTCATATAA

Protein sequence

MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIGASWYTMNWQVPVQKDATSQPLHTFRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGIVIALVISYTWTLKIKILRLTMILLFCIDRYLQAQIYIDIYILSGSHTYHYSNSYIYSYIYGEGENSSESEGFI

Homology

[Close]

BLAST of Clc03G06615 vs. NCBI nr
Match: EFH63362.1 (hypothetical protein ARALYDRAFT_894439 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-35
Identity = 91/155 (58.71%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDE DLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 7   MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 66

Query: 61  T---------MNWQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQLRP 120
           T         + W    Q D T             LH  F LI FMLRQFEL R VQLRP
Sbjct: 67  THGLFLLLLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRP 126

Query: 121 YNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           YNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 127 YNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 161

[Close]

BLAST of Clc03G06615 vs. NCBI nr
Match: KAG7528538.1 (Photosystem II protein D1/D2 superfamily, partial [Arabidopsis suecica] >KAG7528907.1 Photosystem II protein D1/D2 superfamily, partial [Arabidopsis suecica])

HSP 1 Score: 159.5 bits (402), Expect = 3.1e-35
Identity = 91/155 (58.71%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDE DLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 7   MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 66

Query: 61  T---------MNWQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQLRP 120
           T         + W    Q D T             LH  F LI FMLRQFEL R VQLRP
Sbjct: 67  THGLATHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRP 126

Query: 121 YNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           YNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 127 YNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 161

[Close]

BLAST of Clc03G06615 vs. NCBI nr
Match: YP_009485132.1 (PsbD [Barclaya kunstleri] >AUD56318.1 PsbD [Barclaya kunstleri])

HSP 1 Score: 157.5 bits (397), Expect = 1.2e-34
Identity = 90/157 (57.32%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ +FTK+ENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGRFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  TMN-----------WQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQL 120
           T             W    Q D T             LH  F LI FMLRQFEL R VQL
Sbjct: 61  THGLASSYLEGCNFWGPEAQGDFTRWCQLGGLWPFVALHGAFGLIGFMLRQFELARSVQL 120

Query: 121 RPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           RPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 RPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 157

[Close]

BLAST of Clc03G06615 vs. NCBI nr
Match: YP_009415067.1 (photosystem II protein D2 [Barclaya longifolia] >ASB29477.1 photosystem II protein D2 [Barclaya longifolia])

HSP 1 Score: 156.0 bits (393), Expect = 3.4e-34
Identity = 90/157 (57.32%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+  FTK+ENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGGFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  TMN-----------WQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQL 120
           T             W    Q D T             LH  F LI FMLRQFEL R VQL
Sbjct: 61  THGLASSYLEGCNLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQL 120

Query: 121 RPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           RPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 RPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 157

[Close]

BLAST of Clc03G06615 vs. NCBI nr
Match: QIT04128.1 (photosystem II protein D2 [Sechium edule])

HSP 1 Score: 155.2 bits (391), Expect = 5.8e-34
Identity = 93/176 (52.84%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIAV KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDXTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot
Match: Q4VZN8 (Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-36
Identity = 93/176 (52.84%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIAV KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot
Match: Q2MIJ2 (Photosystem II D2 protein OS=Solanum bulbocastanum OX=147425 GN=psbD PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 92/176 (52.27%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAIGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot
Match: Q2MIA5 (Photosystem II D2 protein OS=Solanum lycopersicum OX=4081 GN=psbD PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 92/176 (52.27%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAIGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot
Match: Q2VEI1 (Photosystem II D2 protein OS=Solanum tuberosum OX=4113 GN=psbD PE=3 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 92/176 (52.27%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAIGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot
Match: B1A930 (Photosystem II D2 protein OS=Carica papaya OX=3649 GN=psbD PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.7e-36
Identity = 93/176 (52.84%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF IG          SWY
Sbjct: 1   MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAIGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FGLIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy TrEMBL
Match: D7KUZ8 (Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRAFT_894439 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-35
Identity = 91/155 (58.71%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDE DLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 7   MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 66

Query: 61  T---------MNWQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQLRP 120
           T         + W    Q D T             LH  F LI FMLRQFEL R VQLRP
Sbjct: 67  THGLFLLLLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALIGFMLRQFELARSVQLRP 126

Query: 121 YNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           YNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 127 YNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 161

[Close]

BLAST of Clc03G06615 vs. ExPASy TrEMBL
Match: A0A2S0EB08 (Photosystem II D2 protein OS=Barclaya kunstleri OX=2043564 GN=psbD PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 5.7e-35
Identity = 90/157 (57.32%), Postives = 99/157 (63.06%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ +FTK+ENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGRFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  TMN-----------WQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQL 120
           T             W    Q D T             LH  F LI FMLRQFEL R VQL
Sbjct: 61  THGLASSYLEGCNFWGPEAQGDFTRWCQLGGLWPFVALHGAFGLIGFMLRQFELARSVQL 120

Query: 121 RPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           RPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 RPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 157

[Close]

BLAST of Clc03G06615 vs. ExPASy TrEMBL
Match: A0A220F168 (Photosystem II D2 protein OS=Barclaya longifolia OX=4412 GN=psbD PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 90/157 (57.32%), Postives = 98/157 (62.42%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+  FTK+ENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGGFTKEENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  TMN-----------WQVPVQKDATS----------QPLH-TFRLISFMLRQFELPRFVQL 120
           T             W    Q D T             LH  F LI FMLRQFEL R VQL
Sbjct: 61  THGLASSYLEGCNLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQL 120

Query: 121 RPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           RPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 RPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 157

[Close]

BLAST of Clc03G06615 vs. ExPASy TrEMBL
Match: A0A6P5MJ25 (Photosystem II D2 protein OS=Arachis duranensis OX=130453 GN=LOC110274666 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 93/176 (52.84%), Postives = 101/176 (57.39%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYFEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFFVPSFG+
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFVPSFGV 176

[Close]

BLAST of Clc03G06615 vs. ExPASy TrEMBL
Match: A0A411K047 (Photosystem II D2 protein OS=Trigastrotheca stricta OX=437579 GN=psbD PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.8e-34
Identity = 93/176 (52.84%), Postives = 100/176 (56.82%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIAV KFTKDENDLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIAVGKFTKDENDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFAVGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

[Close]

BLAST of Clc03G06615 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 151.4 bits (381), Expect = 7.8e-37
Identity = 91/176 (51.70%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 1   MTIAVSKFTKDENDLFNIMDDSLWRDHFVFVGWSGLLLFPCAYFVIG---------ASWY 60
           MTIA+ KFTKDE DLF+IMDD L RD FVFVGWSGLLLFPCAYF +G          SWY
Sbjct: 1   MTIALGKFTKDEKDLFDIMDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWY 60

Query: 61  T------------------------------MNWQVPVQKDATS----------QPLH-T 120
           T                              + W    Q D T             LH  
Sbjct: 61  THGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGA 120

Query: 121 FRLISFMLRQFELPRFVQLRPYNAIAFSGPIVVFISMFMISLLGPSGWFFVPSFGI 127
           F LI FMLRQFEL R VQLRPYNAIAFSGPI VF+S+F+I  LG SGWFF PSFG+
Sbjct: 121 FALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGV 176

The following BLAST results are available for this feature:

BLAST of Clc03G06615 vs. NCBI nr


Match Name	E-value	Identity	Description
EFH63362.1	3.1e-35	58.71	hypothetical protein ARALYDRAFT_894439 [Arabidopsis lyrata subsp. lyrata]	[more]
KAG7528538.1	3.1e-35	58.71	Photosystem II protein D1/D2 superfamily, partial [Arabidopsis suecica] >KAG7528...	[more]
YP_009485132.1	1.2e-34	57.32	PsbD [Barclaya kunstleri] >AUD56318.1 PsbD [Barclaya kunstleri]	[more]
YP_009415067.1	3.4e-34	57.32	photosystem II protein D2 [Barclaya longifolia] >ASB29477.1 photosystem II prote...	[more]
QIT04128.1	5.8e-34	52.84	photosystem II protein D2 [Sechium edule]	[more]

BLAST of Clc03G06615 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZN8	1.0e-36	52.84	Photosystem II D2 protein OS=Cucumis sativus OX=3659 GN=psbD PE=3 SV=1	[more]
Q2MIJ2	1.3e-36	52.27	Photosystem II D2 protein OS=Solanum bulbocastanum OX=147425 GN=psbD PE=3 SV=1	[more]
Q2MIA5	1.3e-36	52.27	Photosystem II D2 protein OS=Solanum lycopersicum OX=4081 GN=psbD PE=3 SV=1	[more]
Q2VEI1	1.3e-36	52.27	Photosystem II D2 protein OS=Solanum tuberosum OX=4113 GN=psbD PE=3 SV=1	[more]
B1A930	1.7e-36	52.84	Photosystem II D2 protein OS=Carica papaya OX=3649 GN=psbD PE=3 SV=1	[more]

BLAST of Clc03G06615 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
D7KUZ8	1.5e-35	58.71	Uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata OX=81972 GN=ARALYDRA...	[more]
A0A2S0EB08	5.7e-35	57.32	Photosystem II D2 protein OS=Barclaya kunstleri OX=2043564 GN=psbD PE=3 SV=1	[more]
A0A220F168	1.6e-34	57.32	Photosystem II D2 protein OS=Barclaya longifolia OX=4412 GN=psbD PE=3 SV=1	[more]
A0A6P5MJ25	2.8e-34	52.84	Photosystem II D2 protein OS=Arachis duranensis OX=130453 GN=LOC110274666 PE=3 S...	[more]
A0A411K047	2.8e-34	52.84	Photosystem II D2 protein OS=Trigastrotheca stricta OX=437579 GN=psbD PE=3 SV=1	[more]

BLAST of Clc03G06615 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	7.8e-37	51.70	photosystem II reaction center protein D	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 70..130 e-value: 4.2E-9 score: 36.0
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 70..126
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 70..126
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 17..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G06615.1	Clc03G06615.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0019684	photosynthesis, light reaction
cellular_component	GO:0034357	photosynthetic membrane
cellular_component	GO:0009536	plastid
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity