Clc03G06330 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G06330
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RMA1H1-like
Location	ClcChr03: 6021083 .. 6021805 (-)
RNA-Seq Expression	Clc03G06330
Synteny	Clc03G06330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTGAGCACCACTTTTCTCATGGATGGAGGAGGCAGATCCCAGCTGCAATGGCAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTCGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCACATCCAGACTGCCTCCTTTGCCCTTGACGAGCCTCCGCAATGTCCGGTTTGCAAGGCCGATATTTCCCACACGACAATGGTTCCTCTCTATGGCCGTGGTCAATTGGCCGAAGATGCTGAGACTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTTGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATCCTTCTAGCCAGCAGTTTGCCTATGGAGACCTATATCAAAACCAAAACAACAATTTTGATATGTATGACAGTTACGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTCGAAGACAGCCTGGTTGGTAGTTTTCGTCATCCTACGGCTGGGATGTTCGCGGAGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAACTCTTATGGTCTAAGTGGGACTAGTAGTCCTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCACTTAACAGGATATCAATTTTTCTCTTCTGTTGCATCGTTTTGTGCCTTGCTGTATTCTAA

mRNA sequence

ATGGCCTTTGAGCACCACTTTTCTCATGGATGGAGGAGGCAGATCCCAGCTGCAATGGCAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTCGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCACATCCAGACTGCCTCCTTTGCCCTTGACGAGCCTCCGCAATGTCCGGTTTGCAAGGCCGATATTTCCCACACGACAATGGTTCCTCTCTATGGCCGTGGTCAATTGGCCGAAGATGCTGAGACTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTTGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATCCTTCTAGCCAGCAGTTTGCCTATGGAGACCTATATCAAAACCAAAACAACAATTTTGATATGTATGACAGTTACGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTCGAAGACAGCCTGGTTGGTAGTTTTCGTCATCCTACGGCTGGGATGTTCGCGGAGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAACTCTTATGGTCTAAGTGGGACTAGTAGTCCTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCACTTAACAGGATATCAATTTTTCTCTTCTGTTGCATCGTTTTGTGCCTTGCTGTATTCTAA

Coding sequence (CDS)

ATGGCCTTTGAGCACCACTTTTCTCATGGATGGAGGAGGCAGATCCCAGCTGCAATGGCAAACTCTGAGAAGATTAAGCCTTGCTTTGACTGCAACATTTGCTTAGACTTCGCATCTGAGCCTATAGTTACCCTCTGTGGCCACCTCTATTGCTGGCCTTGCATTTACAAGTGGCTTCACATCCAGACTGCCTCCTTTGCCCTTGACGAGCCTCCGCAATGTCCGGTTTGCAAGGCCGATATTTCCCACACGACAATGGTTCCTCTCTATGGCCGTGGTCAATTGGCCGAAGATGCTGAGACTGATGCCAGAGGGCTGCTCATACCTCCTAGACCATCAGCCTTTGGCAACAAGGCTCTGGCAACTATCAGATCTAATAATCCTTCTAGCCAGCAGTTTGCCTATGGAGACCTATATCAAAACCAAAACAACAATTTTGATATGTATGACAGTTACGAAGAGGACTCCAGCAGCTCGTTGTTTAACCTCGAAGACAGCCTGGTTGGTAGTTTTCGTCATCCTACGGCTGGGATGTTCGCGGAGACAGTGTATGCTAGGTTCTTTAGGAATTCAGAGAACATGTACGCACACCCAAACTCTTATGGTCTAAGTGGGACTAGTAGTCCTCGGTTGAGAAGGCAGGAAATACTGGCCGAGAAGTCACTTAACAGGATATCAATTTTTCTCTTCTGTTGCATCGTTTTGTGCCTTGCTGTATTCTAA

Protein sequence

MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF

Homology

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BLAST of Clc03G06330 vs. NCBI nr
Match: XP_038895713.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 441.8 bits (1135), Expect = 3.7e-120
Identity = 211/240 (87.92%), Postives = 218/240 (90.83%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEH+F HGWRRQ+PAAMANSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFPHGWRRQVPAAMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS   DEPPQCPVCKA+ISHTTMVPLYGRGQ AEDAE DARGLLIPPRPSAFGNKAL
Sbjct: 61  VQSASLTPDEPPQCPVCKANISHTTMVPLYGRGQSAEDAEVDARGLLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSN  S QQFAYGDLYQNQ  NFDMYDSYEEDSSSSLFNLEDS VGS  HPTAGMF 
Sbjct: 121 ATIRSNTASGQQFAYGDLYQNQIYNFDMYDSYEEDSSSSLFNLEDSSVGSLHHPTAGMFT 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
           ETVYARFF NSEN+Y HP+SYG SG SSPRLRRQEILAEKSLNRISIFLFCC VLCL VF
Sbjct: 181 ETVYARFFGNSENVYTHPSSYGPSGNSSPRLRRQEILAEKSLNRISIFLFCCFVLCLVVF 240

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BLAST of Clc03G06330 vs. NCBI nr
Match: XP_008442466.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442488.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >KAA0056985.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa] >TYK26413.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo var. makuwa])

HSP 1 Score: 425.2 bits (1092), Expect = 3.6e-115
Identity = 201/240 (83.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEH+FSHGWR+QIPA+MANSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS A DEPPQCPVCKADISHTTMVPLYGRGQ AE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSNN SSQQFAYGDL QNQN NFD+YDSYEEDS SSLF+LED+ VGS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
            TVY R + +SEN+Y HPNSYGLSG++SPRLRRQEI+AEKSLNRIS FLFCC +LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Clc03G06330 vs. NCBI nr
Match: XP_011653163.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical protein Csa_013288 [Cucumis sativus])

HSP 1 Score: 421.8 bits (1083), Expect = 4.0e-114
Identity = 198/240 (82.50%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEH+FSHGWR+QIPA+M NSEK KPCFDCNICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS A DEPPQCPVCKA+ISHTTMVPLYGRGQ AE AE DARG+LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSNN SSQQFAYGDL QNQN NFD+YDSYEEDS SSLF+LED+ VGS  HPTAGM  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
           ETVY RF+ +SEN+Y HPNSYGLSG++SPRLRRQEI+AEKSLN+I  FLFCC +LCLAVF
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

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BLAST of Clc03G06330 vs. NCBI nr
Match: XP_023519102.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519103.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_023519104.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 392.1 bits (1006), Expect = 3.4e-105
Identity = 188/241 (78.01%), Postives = 207/241 (85.89%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPA-AMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEH+FS  WRR +PA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HIQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKA 120
           H+Q+AS   DEPPQCPVCKADISHTTMVPLYGRGQ A++AE D RGLLIPPRPSAFGNK 
Sbjct: 61  HVQSASLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMF 180
           LA+I SNN S +Q  YGDLYQNQN+NFDMYDSYEEDSSSSLFN+ED+ VGSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 AETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAV 240
            ETVY R F +SEN+YAHPNSY L+G+ SP+LR Q    EKSLNRISIFLFCC VLCLA+
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Clc03G06330 vs. NCBI nr
Match: XP_022926997.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022926998.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022926999.1 E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata])

HSP 1 Score: 389.8 bits (1000), Expect = 1.7e-104
Identity = 188/241 (78.01%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPA-AMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEH+FS  WRR +PA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HIQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKA 120
           HIQ+AS   DEPPQCPVCKADISHTTMVPLYGR Q A++AE D RGLLIPPRPSAFGNK 
Sbjct: 61  HIQSASLLPDEPPQCPVCKADISHTTMVPLYGRDQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMF 180
           LA+I SNN S +Q  YGDLYQNQN+NFDMYDSYEEDSSSSLFN+ED+ VGSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 AETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAV 240
            ETVY R F +SEN+YAHPNSY L+G+ SP+LR Q    EKSLNRISIFLFCC VLCLA+
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.5e-42
Identity = 102/226 (45.13%), Postives = 131/226 (57.96%), Query Frame = 0


Query: 23  EKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASF--ALDEPPQCPVCKAD 82
           E I   FDCNICLD   EP++TLCGHLYCWPCIYKW++ Q+ S   +  + PQCPVCKA+
Sbjct: 33  ENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAE 92

Query: 83  ISHTTMVPLYGR-GQLAEDAETDA--RGLLIPPRPSA--FGNKALATIRSNNPSSQQFAY 142
           +S  T++PLYGR GQ  + +E  A   G++IP RP +   G   L     +NPS      
Sbjct: 93  VSEKTLIPLYGRGGQSTKPSEGKAPNLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLLQRR 152

Query: 143 GDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFFRNSE-NM 202
           G   Q+Q        SY    SS + +   +     +H    M  E  YAR F NS   M
Sbjct: 153 GYQQQSQTRQPAYQGSY---MSSPMLSPGGATANMLQH---SMIGEVAYARIFGNSSTTM 212

Query: 203 YAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
           Y +PNSY L+ +SSPR+RRQ   A++SL RI  FLFCC V CL +F
Sbjct: 213 YTYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 6.4e-38
Identity = 93/221 (42.08%), Postives = 128/221 (57.92%), Query Frame = 0


Query: 28  CFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFALDE-PPQCPVCKADISHTTM 87
           CFDCNICLD A +P+VTLCGHL+CWPCIYKWLH+Q +S ++D+    CPVCK++I+ T++
Sbjct: 41  CFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSL 100

Query: 88  VPLYGRGQLAEDA-----ETDARGLLIP--PRPSAFGNKALATIRSNNPSSQQFAYGDLY 147
           VPLYGRG  +  +     + DA    IP  P PSA  N  + +  S NPS Q       +
Sbjct: 101 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNPSLQHQTLSPSF 160

Query: 148 QNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFFRNSENMYAHPN 207
            N   +   + + E        +L ++++ SF +P  GMF + VY R F    N  A P 
Sbjct: 161 HNHQYSPRGFTTTEST------DLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQP- 220

Query: 208 SYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
                   S R+ ++    EKSLNR+SIF  CCI+LCL +F
Sbjct: 221 ------YQSQRMMQR----EKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.5e-34
Identity = 91/217 (41.94%), Postives = 121/217 (55.76%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFA--LDEPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL +Q+ S +       QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQNQNNNF 148
           VPLYGRG+     E       +P RP           R   P+S  +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRPVG------PVYRLEMPNS-PYASTDLRLSQRVHF 165

Query: 149 DMYDS--YEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFF-RNSENMYAHPNSYGL 208
           +      Y      S  +L  S V     P   M  E V  R F     + +A+P++Y L
Sbjct: 166 NSPQEGYYPVSGVMSSNSLSYSAV---LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNL 225

Query: 209 SGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
           +GTS PR+RR+ + A+KSL RI  F  CC+VLCL +F
Sbjct: 226 AGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-25
Identity = 76/220 (34.55%), Postives = 110/220 (50.00%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFA-------LDEPPQCPVCKADI 88
           FDCNICLD   +P+VTLCGHL+CWPCI+KW +    S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQN 148
           S  T+VP+YGRGQ A  +     G  +P RP+                      G +Y  
Sbjct: 79  SEATLVPIYGRGQKAPQS-----GSNVPSRPT----------------------GPVYDL 138

Query: 149 QNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFF-RNSENMYAHPNS 208
           +     +    E +S   ++ + D        P  G+  E VY R F  +S NM  + + 
Sbjct: 139 RGVGQRL---GEGESQRYMYRMPD--------PVMGVVCEMVYRRLFGESSSNMAPYRD- 193

Query: 209 YGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
                  + R RR+ + AE+SL+R+ +FL C + +CL +F
Sbjct: 199 ------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot
Match: Q99942 (E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.6e-18
Identity = 43/84 (51.19%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFALDEPPQCPVCKADISHTTMVP 88
           F+CNICL+ A E +V++CGHLYCWPC+++WL  +       E  +CPVCKA IS   +VP
Sbjct: 25  FECNICLETAREAVVSVCGHLYCWPCLHQWLETR------PERQECPVCKAGISREKVVP 84

Query: 89  LYGRGQLAEDAETDARGLLIPPRP 113
           LYGRG        D R L  PPRP
Sbjct: 85  LYGRG---SQKPQDPR-LKTPPRP 98

[Close]

BLAST of Clc03G06330 vs. ExPASy TrEMBL
Match: A0A1S3B6D8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 201/240 (83.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEH+FSHGWR+QIPA+MANSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS A DEPPQCPVCKADISHTTMVPLYGRGQ AE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSNN SSQQFAYGDL QNQN NFD+YDSYEEDS SSLF+LED+ VGS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
            TVY R + +SEN+Y HPNSYGLSG++SPRLRRQEI+AEKSLNRIS FLFCC +LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Clc03G06330 vs. ExPASy TrEMBL
Match: A0A5A7UTV8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00770 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 201/240 (83.75%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           MAFEH+FSHGWR+QIPA+MANSEK KPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MAFEHYFSHGWRKQIPASMANSEKFKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS A DEPPQCPVCKADISHTTMVPLYGRGQ AE AE DARG LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKADISHTTMVPLYGRGQSAEHAEDDARGTLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSNN SSQQFAYGDL QNQN NFD+YDSYEEDS SSLF+LED+ VGS  HPTAG+  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGLLG 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
            TVY R + +SEN+Y HPNSYGLSG++SPRLRRQEI+AEKSLNRIS FLFCC +LCLAVF
Sbjct: 181 GTVYGRLYGDSENVYRHPNSYGLSGSNSPRLRRQEIVAEKSLNRISFFLFCCFILCLAVF 240

[Close]

BLAST of Clc03G06330 vs. ExPASy TrEMBL
Match: A0A0A0LUK5 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 1.9e-114
Identity = 198/240 (82.50%), Postives = 217/240 (90.42%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPAAMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWLH 60
           M FEH+FSHGWR+QIPA+M NSEK KPCFDCNICLDFAS+PIVTLCGHLYCWPCIYKWLH
Sbjct: 1   MGFEHYFSHGWRKQIPASMENSEKFKPCFDCNICLDFASDPIVTLCGHLYCWPCIYKWLH 60

Query: 61  IQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKAL 120
           +Q+AS A DEPPQCPVCKA+ISHTTMVPLYGRGQ AE AE DARG+LIPPRPSAFGNKAL
Sbjct: 61  VQSASLAPDEPPQCPVCKANISHTTMVPLYGRGQSAEHAEVDARGMLIPPRPSAFGNKAL 120

Query: 121 ATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFA 180
           ATIRSNN SSQQFAYGDL QNQN NFD+YDSYEEDS SSLF+LED+ VGS  HPTAGM  
Sbjct: 121 ATIRSNNASSQQFAYGDLDQNQNYNFDVYDSYEEDSGSSLFSLEDNPVGSSHHPTAGMLG 180

Query: 181 ETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 240
           ETVY RF+ +SEN+Y HPNSYGLSG++SPRLRRQEI+AEKSLN+I  FLFCC +LCLAVF
Sbjct: 181 ETVYGRFYWDSENIYRHPNSYGLSGSNSPRLRRQEIVAEKSLNKIYFFLFCCFLLCLAVF 240

[Close]

BLAST of Clc03G06330 vs. ExPASy TrEMBL
Match: A0A6J1EJS4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111433961 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 8.2e-105
Identity = 188/241 (78.01%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPA-AMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEH+FS  WRR +PA +M NSEK K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEKFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HIQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKA 120
           HIQ+AS   DEPPQCPVCKADISHTTMVPLYGR Q A++AE D RGLLIPPRPSAFGNK 
Sbjct: 61  HIQSASLLPDEPPQCPVCKADISHTTMVPLYGRDQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMF 180
           LA+I SNN S +Q  YGDLYQNQN+NFDMYDSYEEDSSSSLFN+ED+ VGSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYGDLYQNQNDNFDMYDSYEEDSSSSLFNMEDNPVGSFGHPTARMF 180

Query: 181 AETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAV 240
            ETVY R F +SEN+YAHPNSY L+G+ SP+LR Q    EKSLNRISIFLFCC VLCLA+
Sbjct: 181 GETVYGRLFGSSENLYAHPNSYALTGSGSPQLRMQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Clc03G06330 vs. ExPASy TrEMBL
Match: A0A6J1KJG8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111495790 PE=4 SV=1)

HSP 1 Score: 379.8 bits (974), Expect = 8.5e-102
Identity = 184/241 (76.35%), Postives = 205/241 (85.06%), Query Frame = 0


Query: 1   MAFEHHFSHGWRRQIPA-AMANSEKIKPCFDCNICLDFASEPIVTLCGHLYCWPCIYKWL 60
           MAFEH+FS  WRR +PA +M NSE+ K CFDCNICL+FASEPIVTLCGHLYCWPCIYKWL
Sbjct: 1   MAFEHYFSRRWRRCVPASSMENSEQFKACFDCNICLEFASEPIVTLCGHLYCWPCIYKWL 60

Query: 61  HIQTASFALDEPPQCPVCKADISHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKA 120
           H+Q+ S   DEPPQCPVCKADISHTTMVPLYGRGQ A++AE D RGLLIPPRPSAFGNK 
Sbjct: 61  HVQSDSLLPDEPPQCPVCKADISHTTMVPLYGRGQSAKEAEVDPRGLLIPPRPSAFGNKV 120

Query: 121 LATIRSNNPSSQQFAYGDLYQNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMF 180
           LA+I SNN S +Q  Y DLYQ QN+NFDMYDSYEEDSSSSLFNLED+ VGSF HPTA MF
Sbjct: 121 LASIGSNNASGEQLVYRDLYQYQNDNFDMYDSYEEDSSSSLFNLEDNPVGSFGHPTARMF 180

Query: 181 AETVYARFFRNSENMYAHPNSYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAV 240
            ETVYAR F +SE+++AHPNSY L+G+ SP+LR Q    EKSLNRISIFLFCC VLCLA+
Sbjct: 181 GETVYARLFGSSESLHAHPNSYALTGSGSPQLRIQ----EKSLNRISIFLFCCFVLCLAI 237

[Close]

BLAST of Clc03G06330 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 159.1 bits (401), Expect = 4.5e-39
Identity = 93/221 (42.08%), Postives = 128/221 (57.92%), Query Frame = 0


Query: 28  CFDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFALDE-PPQCPVCKADISHTTM 87
           CFDCNICLD A +P+VTLCGHL+CWPCIYKWLH+Q +S ++D+    CPVCK++I+ T++
Sbjct: 41  CFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSVSVDQHQNNCPVCKSNITITSL 100

Query: 88  VPLYGRGQLAEDA-----ETDARGLLIP--PRPSAFGNKALATIRSNNPSSQQFAYGDLY 147
           VPLYGRG  +  +     + DA    IP  P PSA  N  + +  S NPS Q       +
Sbjct: 101 VPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRN-PITSASSLNPSLQHQTLSPSF 160

Query: 148 QNQNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFFRNSENMYAHPN 207
            N   +   + + E        +L ++++ SF +P  GMF + VY R F    N  A P 
Sbjct: 161 HNHQYSPRGFTTTEST------DLANAVMMSFLYPVIGMFGDLVYTRIFGTFTNTIAQP- 220

Query: 208 SYGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
                   S R+ ++    EKSLNR+SIF  CCI+LCL +F
Sbjct: 221 ------YQSQRMMQR----EKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Clc03G06330 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 91/217 (41.94%), Postives = 121/217 (55.76%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFA--LDEPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL +Q+ S +       QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQNQNNNF 148
           VPLYGRG+     E       +P RP           R   P+S  +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRPVG------PVYRLEMPNS-PYASTDLRLSQRVHF 165

Query: 149 DMYDS--YEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFF-RNSENMYAHPNSYGL 208
           +      Y      S  +L  S V     P   M  E V  R F     + +A+P++Y L
Sbjct: 166 NSPQEGYYPVSGVMSSNSLSYSAV---LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNL 225

Query: 209 SGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
           +GTS PR+RR+ + A+KSL RI  F  CC+VLCL +F
Sbjct: 226 AGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc03G06330 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 147.9 bits (372), Expect = 1.0e-35
Identity = 91/217 (41.94%), Postives = 121/217 (55.76%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFA--LDEPPQCPVCKADISHTTM 88
           FDCNICLD   EP+VTLCGHL+CWPCI+KWL +Q+ S +       QCPVCK+ +SH+T+
Sbjct: 46  FDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSHSTL 105

Query: 89  VPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQNQNNNF 148
           VPLYGRG+     E       +P RP           R   P+S  +A  DL  +Q  +F
Sbjct: 106 VPLYGRGRCTTQEEGKNS---VPKRPVG------PVYRLEMPNS-PYASTDLRLSQRVHF 165

Query: 149 DMYDS--YEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFF-RNSENMYAHPNSYGL 208
           +      Y      S  +L  S V     P   M  E V  R F     + +A+P++Y L
Sbjct: 166 NSPQEGYYPVSGVMSSNSLSYSAV---LDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNL 225

Query: 209 SGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
           +GTS PR+RR+ + A+KSL RI  F  CC+VLCL +F
Sbjct: 226 AGTSGPRMRRRIMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc03G06330 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-26
Identity = 76/220 (34.55%), Postives = 110/220 (50.00%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFA-------LDEPPQCPVCKADI 88
           FDCNICLD   +P+VTLCGHL+CWPCI+KW +    S           EPP+CPVCK+D+
Sbjct: 19  FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDV 78

Query: 89  SHTTMVPLYGRGQLAEDAETDARGLLIPPRPSAFGNKALATIRSNNPSSQQFAYGDLYQN 148
           S  T+VP+YGRGQ A  +     G  +P RP+                      G +Y  
Sbjct: 79  SEATLVPIYGRGQKAPQS-----GSNVPSRPT----------------------GPVYDL 138

Query: 149 QNNNFDMYDSYEEDSSSSLFNLEDSLVGSFRHPTAGMFAETVYARFF-RNSENMYAHPNS 208
           +     +    E +S   ++ + D        P  G+  E VY R F  +S NM  + + 
Sbjct: 139 RGVGQRL---GEGESQRYMYRMPD--------PVMGVVCEMVYRRLFGESSSNMAPYRD- 193

Query: 209 YGLSGTSSPRLRRQEILAEKSLNRISIFLFCCIVLCLAVF 241
                  + R RR+ + AE+SL+R+ +FL C + +CL +F
Sbjct: 199 ------MNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Clc03G06330 vs. TAIR 10
Match: AT1G19310.1 (RING/U-box superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 7.0e-24
Identity = 48/86 (55.81%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 29  FDCNICLDFASEPIVTLCGHLYCWPCIYKWLHIQTASFALDEPPQCPVCKADISHTTMVP 88
           F+CNICLD A +PIVTLCGHL+CWPC+YKWLH+ + S        CPVCKA I    +VP
Sbjct: 21  FECNICLDLAQDPIVTLCGHLFCWPCLYKWLHLHSQS------KDCPVCKAVIEEDRLVP 80

Query: 89  LYGRGQLAEDAETDA-RGLLIPPRPS 114
           LYGRG+ + D  + +  GL +P RPS
Sbjct: 81  LYGRGKSSADPRSKSIPGLEVPNRPS 100

The following BLAST results are available for this feature:

BLAST of Clc03G06330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895713.1	3.7e-120	87.92	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida]	[more]
XP_008442466.1	3.6e-115	83.75	PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Cucumis melo] >XP_008442474....	[more]
XP_011653163.1	4.0e-114	82.50	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN64674.1 hypothetical pr...	[more]
XP_023519102.1	3.4e-105	78.01	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo] >XP_0235191...	[more]
XP_022926997.1	1.7e-104	78.01	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita moschata] >XP_022926998.1 E3 ...	[more]

BLAST of Clc03G06330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	1.5e-42	45.13	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
Q8GUK7	6.4e-38	42.08	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
O64425	1.5e-34	41.94	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
P93030	1.6e-25	34.55	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q99942	9.6e-18	51.19	E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1	[more]

BLAST of Clc03G06330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B6D8	1.8e-115	83.75	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo OX=3656 GN=LOC103486320 ...	[more]
A0A5A7UTV8	1.8e-115	83.75	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LUK5	1.9e-114	82.50	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G073810 P...	[more]
A0A6J1EJS4	8.2e-105	78.01	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KJG8	8.5e-102	76.35	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111495...	[more]

BLAST of Clc03G06330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27470.1	4.5e-39	42.08	RING membrane-anchor 3	[more]
AT4G03510.1	1.0e-35	41.94	RING membrane-anchor 1	[more]
AT4G03510.2	1.0e-35	41.94	RING membrane-anchor 1	[more]
AT4G28270.1	1.2e-26	34.55	RING membrane-anchor 2	[more]
AT1G19310.1	7.0e-24	55.81	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 31..77 e-value: 9.6E-9 score: 45.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 31..78 score: 12.445019
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 11..134 e-value: 8.0E-17 score: 63.1
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 31..77 e-value: 3.7E-8 score: 33.1
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 2..240
None	No IPR available	PANTHER	PTHR12313:SF6	E3 UBIQUITIN-PROTEIN LIGASE RMA3	coord: 2..240
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 29..79 e-value: 2.90573E-25 score: 91.9819
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 24..91
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 46..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G06330.1	Clc03G06330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity