Clc03G06160 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AATAAATAAGCTGCTCAAAGAAATGCCATCACTTTCCTTTCTTCTACCCGCGCCAAACAAAAAGCCGAAGTTATTGCAGAGCTCACGGCCCTTCGATTTTCCCATTCCTTCTTCTTCTTATAACCCTCTTCAACTAAAACCCATTTGCGAGCTGTAAGTTTCGAAGTTGGTTTCCTTCTTTCCTCTCTGAATTTTGAATTTTTGTTTGTTCGACGGTTTCCAAGTTTTTCTGGTTGTTTTCCTTCTTGGGTTTCTCGTTGTAATTACAGGAATTTGGTGTGTTTGTAAGGTTGCTGGATCTTTGAATCATGGGTATGATCGTTTTGATTATGGTGTTTATCTTTGATCTTGTTGCTTTTGCACTTGCTGTTGCTGCAGAGCAGAGAAGAACCACTGTAAGTTTTTTGTATTTCTTCGAACTTTCTATTAATCGTTTTTATTGTTCCATGAATGTTGTTTTTCTGAGAAGTATCATTGGAAATTTGAAAAGGTTTGTGATTTTAATACTGGCTGTGCTGAAATGGCTCGGTGACTGGGTTAAGTTATAAATACAATTCTTTAGGTCTGATTAACTAGAAGAAATTTTTATCTCTATTATGCAATCTACCGGAGAGGGAATTTTTAGCTAATGATTCTGCTTAGTATGAAATGAAACGGCTTATTACACATAAAAGAGAAGACAAATTTGATTTACTGCACCCTGTGGCCTGAAGTAGTTTAAGCCATAGGAATCCCGTTTTTGGGTTATTTTTTGTGTTAGTAGTTTAAGTCATATATGAACAGTTTGGTTCTTTAAGTTTATGATATTAGGGCTCATGATTCTGATCCTAATGTTATTTGGAAGTGAAGATATGACTGGAGTATGATGTGTGTATCTTATTCCCAAAACCGATCCTTCTTTGGCAGGCCACGGTCGTTCAATCAGGCAATTCTAAATTCTGTGCCTATGATTCTGATATTGCAACTGGATTAGGTGTGGGTTCACTTCTGGTCCTATTTGCTAGCCAAGTGATTGTAATGGTGGCAAGTCGATGCTTATGCTGTGGGAGAGCCTTGCGACCCAGCAGTTCGAGGGCTTGGGCAATTACTCTTTTCATCACTTGCTGGTACATTTGATTGCTCAACCTTCAAAATTTACTAGTTTTGTTGTGCTTGACTTTAGTTTATCCTGTAGGAAGATTTTAAACCGCCTTCTTCCCTCATTAAGATTTAGGTTGATAGGCCTAAACCTAAATCCCTATATTATCTCATGAAATGGTAAAGGAAACCAACACATCACGCATTTGAGTATAACATAACGTTTTAGGCAAAGATCCTCGTTTGTTTAGACCACTTAGAGGCATCTGGGGCCCTACTGGCTCTTCAATGTGTTACATAAATGGCCAAATTATAATCTGATTTCAAATGTTTACTTTATGTTACAAAAGATCATTTAACATGTTATAACTATGGAGAAACATGAATGAAGCTAATCGACTACTTGTAGAATTTGAGCTAGAGTTTGTTTCGACTGACACTGGTTATGATATGAGAGACATTTGTGTGTTTTTCAATGTCAGAGGATGAAAATCAAACTCAAAACTTTGTTTCTGGTGGATTGCATTGCATGGACATTTCAGGATATGTTTTGCCATTGCTGAGATCTGTCTGCTGGCCGCATCGGTGCGAAATGCCTATCACACCAAATATGTGAGTTCTCTGATGAATGAGCAAATTACATGCAAAATGCTAAGGAGGGGAGTGTTCGGGGCCGGGGCTGCTTTTATTGTCTTCACATGTTTAACATCAGAGCTGTTCTATGTTAGCTTTTCCAAGGCTCATGACCAGACTTCCTCCTTTGCCAAAGACACTGGCATTAGAATGGCAAACCTATAGAAGGTGAGGAGCTCATTTACTAGAATTGGGGGTTATAGGATTTTGTCAAACATGTGTGACTTGATGATGTGAAAAATGAACCACTGGGAGTGACAGATTACATGTTGAATGCAGATGTACAAATATGATTTGATAGGTGAGTGAAGATTTCATGTTGTGGTTTGTGGTATGTGCCTGTGTCAATGGCTATGTTCCTTTAGTATAACTAAGCTAATCCTTTTCGGTCTTTGTTACTATCGTCATGATCGTATCGACCACCCATCTGACTACCTCATTTTGCATATTAGATTGAACTCTCAATGGTATTTATAGATGTAAACTTTAGAGATCATGAAAGCTTACATCTGAAGTTAGTTAATCCTTTCTGTAACTTGGTGAGTTTGGAAATGTGAAATTTATCCTTGACTGTTACCAAATAAGAATGATGAAATTTTACCTTTTTCTAGAAAACAAGAGTCAAATTAGTCAGCAGGGAAACAAAGAAAAGTAAAGAAATATTAATACAACTCTACTACAATTTGGACTGTGTCATTGACAAATTTAGTCCATTTATTTTGTGCTCAAATTGTTGCCTTTTCTATTGGATTTGATATTTGGGCTCAAC AATAAATAAGCTGCTCAAAGAAATGCCATCACTTTCCTTTCTTCTACCCGCGCCAAACAAAAAGCCGAAGTTATTGCAGAGCTCACGGCCCTTCGATTTTCCCATTCCTTCTTCTTCTTATAACCCTCTTCAACTAAAACCCATTTGCGAGCTGTTGCTGGATCTTTGAATCATGGGTATGATCGTTTTGATTATGGTGTTTATCTTTGATCTTGTTGCTTTTGCACTTGCTGTTGCTGCAGAGCAGAGAAGAACCACTGCCACGGTCGTTCAATCAGGCAATTCTAAATTCTGTGCCTATGATTCTGATATTGCAACTGGATTAGGTGTGGGTTCACTTCTGGTCCTATTTGCTAGCCAAGTGATTGTAATGGTGGCAAGTCGATGCTTATGCTGTGGGAGAGCCTTGCGACCCAGCAGTTCGAGGGCTTGGGCAATTACTCTTTTCATCACTTGCTGGATATGTTTTGCCATTGCTGAGATCTGTCTGCTGGCCGCATCGGTGCGAAATGCCTATCACACCAAATATGTGAGTTCTCTGATGAATGAGCAAATTACATGCAAAATGCTAAGGAGGGGAGTGTTCGGGGCCGGGGCTGCTTTTATTGTCTTCACATGTTTAACATCAGAGCTGTTCTATGTTAGCTTTTCCAAGGCTCATGACCAGACTTCCTCCTTTGCCAAAGACACTGGCATTAGAATGGCAAACCTATAGAAGGTGAGGAGCTCATTTACTAGAATTGGGGGTTATAGGATTTTGTCAAACATGTGTGACTTGATGATGTGAAAAATGAACCACTGGGAGTGACAGATTACATGTTGAATGCAGATGTACAAATATGATTTGATAGGTGAGTGAAGATTTCATGTTGTGGTTTGTGGTATGTGCCTGTGTCAATGGCTATGTTCCTTTAGTATAACTAAGCTAATCCTTTTCGGTCTTTGTTACTATCGTCATGATCGTATCGACCACCCATCTGACTACCTCATTTTGCATATTAGATTGAACTCTCAATGGTATTTATAGATGTAAACTTTAGAGATCATGAAAGCTTACATCTGAAGTTAGTTAATCCTTTCTGTAACTTGGTGAGTTTGGAAATGTGAAATTTATCCTTGACTGTTACCAAATAAGAATGATGAAATTTTACCTTTTTCTAGAAAACAAGAGTCAAATTAGTCAGCAGGGAAACAAAGAAAAGTAAAGAAATATTAATACAACTCTACTACAATTTGGACTGTGTCATTGACAAATTTAGTCCATTTATTTTGTGCTCAAATTGTTGCCTTTTCTATTGGATTTGATATTTGGGCTCAAC ATGGGTATGATCGTTTTGATTATGGTGTTTATCTTTGATCTTGTTGCTTTTGCACTTGCTGTTGCTGCAGAGCAGAGAAGAACCACTGCCACGGTCGTTCAATCAGGCAATTCTAAATTCTGTGCCTATGATTCTGATATTGCAACTGGATTAGGTGTGGGTTCACTTCTGGTCCTATTTGCTAGCCAAGTGATTGTAATGGTGGCAAGTCGATGCTTATGCTGTGGGAGAGCCTTGCGACCCAGCAGTTCGAGGGCTTGGGCAATTACTCTTTTCATCACTTGCTGGATATGTTTTGCCATTGCTGAGATCTGTCTGCTGGCCGCATCGGTGCGAAATGCCTATCACACCAAATATGTGAGTTCTCTGATGAATGAGCAAATTACATGCAAAATGCTAAGGAGGGGAGTGTTCGGGGCCGGGGCTGCTTTTATTGTCTTCACATGTTTAACATCAGAGCTGTTCTATGTTAGCTTTTCCAAGGCTCATGACCAGACTTCCTCCTTTGCCAAAGACACTGGCATTAGAATGGCAAACCTATAG MGMIVLIMVFIFDLVAFALAVAAEQRRTTATVVQSGNSKFCAYDSDIATGLGVGSLLVLFASQVIVMVASRCLCCGRALRPSSSRAWAITLFITCWICFAIAEICLLAASVRNAYHTKYVSSLMNEQITCKMLRRGVFGAGAAFIVFTCLTSELFYVSFSKAHDQTSSFAKDTGIRMANL Homology
BLAST of Clc03G06160 vs. NCBI nr
Match: XP_038905949.1 (uncharacterized protein LOC120091872 [Benincasa hispida] >XP_038905950.1 uncharacterized protein LOC120091872 [Benincasa hispida]) HSP 1 Score: 322.0 bits (824), Expect = 3.2e-84 Identity = 167/180 (92.78%), Postives = 173/180 (96.11%), Query Frame = 0
BLAST of Clc03G06160 vs. NCBI nr
Match: XP_022954617.1 (uncharacterized protein LOC111456828 [Cucurbita moschata] >XP_022954618.1 uncharacterized protein LOC111456828 [Cucurbita moschata]) HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83 Identity = 161/180 (89.44%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Clc03G06160 vs. NCBI nr
Match: KAG6573252.1 (hypothetical protein SDJN03_27139, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012419.1 hypothetical protein SDJN02_25171 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 319.3 bits (817), Expect = 2.1e-83 Identity = 161/180 (89.44%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Clc03G06160 vs. NCBI nr
Match: XP_023542784.1 (uncharacterized protein LOC111802591 [Cucurbita pepo subsp. pepo] >XP_023542785.1 uncharacterized protein LOC111802591 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83 Identity = 160/180 (88.89%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Clc03G06160 vs. NCBI nr
Match: XP_008442281.1 (PREDICTED: uncharacterized protein LOC103486188 [Cucumis melo] >XP_016901058.1 PREDICTED: uncharacterized protein LOC103486188 [Cucumis melo] >KAA0056971.1 DnaJ subfamily C member 22 [Cucumis melo var. makuwa] >TYK26397.1 DnaJ subfamily C member 22 [Cucumis melo var. makuwa]) HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82 Identity = 162/180 (90.00%), Postives = 173/180 (96.11%), Query Frame = 0
BLAST of Clc03G06160 vs. ExPASy TrEMBL
Match: A0A6J1GRF5 (uncharacterized protein LOC111456828 OS=Cucurbita moschata OX=3662 GN=LOC111456828 PE=4 SV=1) HSP 1 Score: 319.3 bits (817), Expect = 1.0e-83 Identity = 161/180 (89.44%), Postives = 176/180 (97.78%), Query Frame = 0
BLAST of Clc03G06160 vs. ExPASy TrEMBL
Match: A0A1S3B5C0 (uncharacterized protein LOC103486188 OS=Cucumis melo OX=3656 GN=LOC103486188 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 5.1e-83 Identity = 162/180 (90.00%), Postives = 173/180 (96.11%), Query Frame = 0
BLAST of Clc03G06160 vs. ExPASy TrEMBL
Match: A0A5A7UTY8 (DnaJ subfamily C member 22 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00600 PE=4 SV=1) HSP 1 Score: 317.0 bits (811), Expect = 5.1e-83 Identity = 162/180 (90.00%), Postives = 173/180 (96.11%), Query Frame = 0
BLAST of Clc03G06160 vs. ExPASy TrEMBL
Match: A0A6J1CEZ1 (uncharacterized protein LOC111010632 OS=Momordica charantia OX=3673 GN=LOC111010632 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 7.3e-82 Identity = 156/180 (86.67%), Postives = 173/180 (96.11%), Query Frame = 0
BLAST of Clc03G06160 vs. ExPASy TrEMBL
Match: A0A6J1K1A5 (uncharacterized protein LOC111490189 OS=Cucurbita maxima OX=3661 GN=LOC111490189 PE=4 SV=1) HSP 1 Score: 312.8 bits (800), Expect = 9.5e-82 Identity = 159/180 (88.33%), Postives = 174/180 (96.67%), Query Frame = 0
BLAST of Clc03G06160 vs. TAIR 10
Match: AT1G61065.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 209.5 bits (532), Expect = 2.2e-54 Identity = 112/179 (62.57%), Postives = 140/179 (78.21%), Query Frame = 0
BLAST of Clc03G06160 vs. TAIR 10
Match: AT1G52910.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 174.1 bits (440), Expect = 1.0e-43 Identity = 88/164 (53.66%), Postives = 119/164 (72.56%), Query Frame = 0
BLAST of Clc03G06160 vs. TAIR 10
Match: AT3G15480.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41 Identity = 84/164 (51.22%), Postives = 119/164 (72.56%), Query Frame = 0
BLAST of Clc03G06160 vs. TAIR 10
Match: AT4G27435.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 166.8 bits (421), Expect = 1.6e-41 Identity = 88/167 (52.69%), Postives = 116/167 (69.46%), Query Frame = 0
BLAST of Clc03G06160 vs. TAIR 10
Match: AT1G13380.1 (Protein of unknown function (DUF1218) ) HSP 1 Score: 142.1 bits (357), Expect = 4.3e-34 Identity = 73/161 (45.34%), Postives = 109/161 (67.70%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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