Clc03G05120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G05120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Patatin
Location	ClcChr03: 4895103 .. 4895495 (-)
RNA-Seq Expression	Clc03G05120
Synteny	Clc03G05120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACATAATAAACCCAGCACCACATTCTGCAAATCCCATTACAGAATGGCTGCAACTGCAACTTCTCCTGTTGCCATAGGAACTCGAGGAACGGTTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAAAGTGGCTTCTTCTGGCTGCAGCAGCAGTTCACCATCCACCTTCTGGCATTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAGATGTGCTCATCTTTCGATGTTTTGAGAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGGTCCTTCAGAATGATTTCCACAGCTTGCAGATGTAG

mRNA sequence

ATGCAACATAATAAACCCAGCACCACATTCTGCAAATCCCATTACAGAATGGCTGCAACTGCAACTTCTCCTGTTGCCATAGGAACTCGAGGAACGGTTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAAAGTGGCTTCTTCTGGCTGCAGCAGCAGTTCACCATCCACCTTCTGGCATTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAGATGTGCTCATCTTTCGATGTTTTGAGAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGGTCCTTCAGAATGATTTCCACAGCTTGCAGATGTAG

Coding sequence (CDS)

ATGCAACATAATAAACCCAGCACCACATTCTGCAAATCCCATTACAGAATGGCTGCAACTGCAACTTCTCCTGTTGCCATAGGAACTCGAGGAACGGTTGGTTCACTCGTCAAGAAGGAAATCGATTATTTTGCCAAGATTGAGCTTGAAAGCTGCAGCAGCTCACAGAGGTCTCAAGGGCCTAAAGTGGCTTCTTCTGGCTGCAGCAGCAGTTCACCATCCACCTTCTGGCATTCTGTAATGTCGTGGCGAAGGAAGAAGAAGCAAACCAGCAATCGCTTTGTCCCAAAGATGTGCTCATCTTTCGATGTTTTGAGAAGCAATCGCCTGAATAAGATTTCTGGGTTAAGTTATACGGTCCTTCAGAATGATTTCCACAGCTTGCAGATGTAG

Protein sequence

MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQNDFHSLQM

Homology

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BLAST of Clc03G05120 vs. NCBI nr
Match: KAG7019678.1 (hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189.5 bits (480), Expect = 1.8e-44
Identity = 100/133 (75.19%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCS--SSQRS 60
           MQHNKPSTTFCKSH +MAATA+  VAIGTRGT+GSL+KKEIDYFAKIELE CS  SSQR 
Sbjct: 1   MQHNKPSTTFCKSHEKMAATAS--VAIGTRGTIGSLIKKEIDYFAKIELERCSSRSSQRP 60

Query: 61  QGPKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSS-FDVLRSNRLNKISGLS 120
           Q P +A+SGC SS P TFWHSVMSWRRKKK++ +RFVPK+CSS FDV  SN++NKISG +
Sbjct: 61  QAPDMATSGC-SSLPPTFWHSVMSWRRKKKRSRSRFVPKICSSAFDVSESNQMNKISGFN 120

Query: 121 YTVLQNDFHSLQM 131
           YT+LQN+FHSL M
Sbjct: 121 YTILQNNFHSLHM 130

[Close]

BLAST of Clc03G05120 vs. NCBI nr
Match: KAA0056869.1 (hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372.1 hypothetical protein E5676_scaffold248G005900 [Cucumis melo var. makuwa])

HSP 1 Score: 175.3 bits (443), Expect = 3.5e-40
Identity = 90/116 (77.59%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQG 60
           MQHNKP+ TF KSHY MAATA  PVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQG
Sbjct: 1   MQHNKPNNTFYKSHYGMAATA--PVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQG 60

Query: 61  PKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGL 117
           P++ASSGC  SSP TFW S+MSWRRKKK TSNRF+ KMCS+FD  RSNR+NKISG+
Sbjct: 61  PEMASSGC-RSSPPTFWQSIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Clc03G05120 vs. NCBI nr
Match: XP_016898893.1 (PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo])

HSP 1 Score: 174.9 bits (442), Expect = 4.6e-40
Identity = 87/110 (79.09%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 21  ATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPKVASSGCSSSSPSTFWHSV 80
           AT+PVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP++ASSGC  SSP TFW S+
Sbjct: 3   ATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGC-RSSPPTFWQSI 62

Query: 81  MSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQNDFHSLQM 131
           MSWRRKKK TSNRF+ KMCS+FD  RSNR+NKISGLSYT+LQNDFHSL +
Sbjct: 63  MSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Clc03G05120 vs. NCBI nr
Match: XP_022140128.1 (uncharacterized protein LOC111010862 [Momordica charantia])

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-39
Identity = 93/130 (71.54%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQG 60
           MQH+KPSTTFCK    MAATA  PVAIGTRGTVGSLVKKEIDYFAKIE E CS      G
Sbjct: 1   MQHSKPSTTFCKFLEEMAATA--PVAIGTRGTVGSLVKKEIDYFAKIEFERCS------G 60

Query: 61  PKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTV 120
             +ASS   SSSP TFWH+VMSWRRKKK+  NRF+ K+CS+FDV  SNRLNKISG +YT+
Sbjct: 61  NDMASSSRRSSSPPTFWHTVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTI 120

Query: 121 LQNDFHSLQM 131
           LQNDF+SL M
Sbjct: 121 LQNDFNSLHM 122

[Close]

BLAST of Clc03G05120 vs. NCBI nr
Match: KGN64543.2 (hypothetical protein Csa_013063 [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 3.9e-39
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 0


Query: 21  ATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPKVASSGCSSSSPSTFWHSV 80
           A +PVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQGP++ASSGC  SSP TFW S+
Sbjct: 3   AIAPVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQGPEMASSGC-RSSPPTFWQSL 62

Query: 81  MSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQNDFHSLQM 131
           MSWRRK K TSNRFV KMCS+FD  RSNR+NKISGLSYT+LQNDFHSL M
Sbjct: 63  MSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHM 111

[Close]

BLAST of Clc03G05120 vs. ExPASy TrEMBL
Match: A0A0A0LX43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 103/130 (79.23%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQG 60
           MQHNKP+ TF KSHY MAA A  PVAIGTRGT+GSLVKKEIDYFAKIELE+  SSQRSQG
Sbjct: 1   MQHNKPTNTFYKSHYGMAAIA--PVAIGTRGTIGSLVKKEIDYFAKIELETSISSQRSQG 60

Query: 61  PKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTV 120
           P++ASSGC  SSP TFW S+MSWRRK K TSNRFV KMCS+FD  RSNR+NKISGLSYT+
Sbjct: 61  PEMASSGC-RSSPPTFWQSLMSWRRKTKLTSNRFVTKMCSTFDASRSNRMNKISGLSYTI 120

Query: 121 LQNDFHSLQM 131
           LQNDFHSL M
Sbjct: 121 LQNDFHSLHM 127

[Close]

BLAST of Clc03G05120 vs. ExPASy TrEMBL
Match: A0A5A7UTL1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005900 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 1.7e-40
Identity = 90/116 (77.59%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQG 60
           MQHNKP+ TF KSHY MAATA  PVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQG
Sbjct: 1   MQHNKPNNTFYKSHYGMAATA--PVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQG 60

Query: 61  PKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGL 117
           P++ASSGC  SSP TFW S+MSWRRKKK TSNRF+ KMCS+FD  RSNR+NKISG+
Sbjct: 61  PEMASSGC-RSSPPTFWQSIMSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGI 113

[Close]

BLAST of Clc03G05120 vs. ExPASy TrEMBL
Match: A0A1S4DSE9 (uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 2.2e-40
Identity = 87/110 (79.09%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 21  ATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPKVASSGCSSSSPSTFWHSV 80
           AT+PVAIGTRGT+GSL+KKEIDYFAKIELE+  SSQRSQGP++ASSGC  SSP TFW S+
Sbjct: 3   ATAPVAIGTRGTIGSLIKKEIDYFAKIELETSISSQRSQGPEMASSGC-RSSPPTFWQSI 62

Query: 81  MSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQNDFHSLQM 131
           MSWRRKKK TSNRF+ KMCS+FD  RSNR+NKISGLSYT+LQNDFHSL +
Sbjct: 63  MSWRRKKKLTSNRFITKMCSTFDASRSNRMNKISGLSYTILQNDFHSLHV 111

[Close]

BLAST of Clc03G05120 vs. ExPASy TrEMBL
Match: A0A6J1CHB1 (uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010862 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 5.0e-40
Identity = 93/130 (71.54%), Postives = 103/130 (79.23%), Query Frame = 0


Query: 1   MQHNKPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQG 60
           MQH+KPSTTFCK    MAATA  PVAIGTRGTVGSLVKKEIDYFAKIE E CS      G
Sbjct: 1   MQHSKPSTTFCKFLEEMAATA--PVAIGTRGTVGSLVKKEIDYFAKIEFERCS------G 60

Query: 61  PKVASSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTV 120
             +ASS   SSSP TFWH+VMSWRRKKK+  NRF+ K+CS+FDV  SNRLNKISG +YT+
Sbjct: 61  NDMASSSRRSSSPPTFWHTVMSWRRKKKRIGNRFITKICSAFDVSGSNRLNKISGFNYTI 120

Query: 121 LQNDFHSLQM 131
           LQNDF+SL M
Sbjct: 121 LQNDFNSLHM 122

[Close]

BLAST of Clc03G05120 vs. ExPASy TrEMBL
Match: A0A7N2LRY9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 62/122 (50.82%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 5   KPSTTFCKSHYRMAATATSPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQRSQGPKVA 64
           K +TT  K   +MAA A +PVAIGTRGTVGSLV+KEI+YF+K+E++ C SS++ QG  V 
Sbjct: 4   KATTTSTKLPEKMAAIA-APVAIGTRGTVGSLVRKEIEYFSKVEIDQCGSSRKPQGQIVD 63

Query: 65  SSGCSSSSPSTFWHSVMSWRRKKKQTSNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQND 124
            +  S  S    W  +M+WRRKK++ S+  +P MCS  +V  SNRLN+I G +Y +L+ND
Sbjct: 64  MASTSGHSKPGLWFLIMTWRRKKRRNSSGILPSMCSVVEVSESNRLNRIPGYNYRILKND 123

Query: 125 FH 127
           F+
Sbjct: 124 FN 124

[Close]

BLAST of Clc03G05120 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-11
Identity = 42/109 (38.53%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 23  SPVAIGTRGTVGSLVKKEIDYFAKIELESCSSSQR----SQGPKVASSGCSSSSPSTFWH 82
           +P+AIGTRGT+GSLV+KEIDYF            R     +          SSS    W 
Sbjct: 3   APIAIGTRGTIGSLVRKEIDYFKNFSTCHPQFDPRRGNSEENKNTFKQRDRSSSRLGSWF 62

Query: 83  SVMSWRRKKKQT---SNRFVPKMCSSFDVLRSNRLNKISGLSYTVLQND 125
           S   WR+KK+QT     +F P MCS+ +V   NR   + G +Y +L++D
Sbjct: 63  SKTKWRKKKRQTRGGGGKFFPSMCSAVEVSGENR---VPGFNYRILKSD 108

The following BLAST results are available for this feature:

BLAST of Clc03G05120 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019678.1	1.8e-44	75.19	hypothetical protein SDJN02_18641, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAA0056869.1	3.5e-40	77.59	hypothetical protein E6C27_scaffold96G00380 [Cucumis melo var. makuwa] >TYJ99372...	[more]
XP_016898893.1	4.6e-40	79.09	PREDICTED: uncharacterized protein LOC103485409 [Cucumis melo]	[more]
XP_022140128.1	1.0e-39	71.54	uncharacterized protein LOC111010862 [Momordica charantia]	[more]
KGN64543.2	3.9e-39	80.00	hypothetical protein Csa_013063 [Cucumis sativus]	[more]

BLAST of Clc03G05120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G05120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LX43	4.2e-47	79.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G063600 PE=4 SV=1	[more]
A0A5A7UTL1	1.7e-40	77.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S4DSE9	2.2e-40	79.09	uncharacterized protein LOC103485409 OS=Cucumis melo OX=3656 GN=LOC103485409 PE=...	[more]
A0A6J1CHB1	5.0e-40	71.54	uncharacterized protein LOC111010862 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A7N2LRY9	1.1e-23	50.82	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of Clc03G05120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21780.1	2.2e-11	38.53	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..76
None	No IPR available	PANTHER	PTHR35131	EXPRESSED PROTEIN	coord: 3..129
None	No IPR available	PANTHER	PTHR35131:SF1	EXPRESSED PROTEIN	coord: 3..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G05120.2	Clc03G05120.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
cellular_component	GO:0005737	cytoplasm