Clc03G04095 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G04095
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein of unknown function (DUF 3339)
Location	ClcChr03: 3997419 .. 3997628 (+)
RNA-Seq Expression	Clc03G04095
Synteny	Clc03G04095

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGGATTGGGCGCCGGTTCTGTTCGGATTACTGCTCTTCATTCTCCTCTCGCCGGGGCTGCTTTTCCAGCTGCCCGGAAATTCTCGCATGGTTGAATTCGGAAGCTTCACCACCAATGGCAAGGCTATTATCGTCCATACCATTCTATTTTTCGGCGTCTTCACCATTCTCATTTTGGCCGTCGATATTCATATCTTCACCGGCTGA

mRNA sequence

ATGTTGGATTGGGCGCCGGTTCTGTTCGGATTACTGCTCTTCATTCTCCTCTCGCCGGGGCTGCTTTTCCAGCTGCCCGGAAATTCTCGCATGGTTGAATTCGGAAGCTTCACCACCAATGGCAAGGCTATTATCGTCCATACCATTCTATTTTTCGGCGTCTTCACCATTCTCATTTTGGCCGTCGATATTCATATCTTCACCGGCTGA

Coding sequence (CDS)

ATGTTGGATTGGGCGCCGGTTCTGTTCGGATTACTGCTCTTCATTCTCCTCTCGCCGGGGCTGCTTTTCCAGCTGCCCGGAAATTCTCGCATGGTTGAATTCGGAAGCTTCACCACCAATGGCAAGGCTATTATCGTCCATACCATTCTATTTTTCGGCGTCTTCACCATTCTCATTTTGGCCGTCGATATTCATATCTTCACCGGCTGA

Protein sequence

MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILILAVDIHIFTG

Homology

[Close]

BLAST of Clc03G04095 vs. NCBI nr
Match: XP_008439857.1 (PREDICTED: uncharacterized protein LOC103484520 [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL
Sbjct: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60

Query: 61 AVDIHIFTG 70
          AVDIHIFTG
Sbjct: 61 AVDIHIFTG 69

[Close]

BLAST of Clc03G04095 vs. NCBI nr
Match: OMO71657.1 (hypothetical protein COLO4_28147 [Corchorus olitorius])

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAP+L GLLLFILLSPGLLFQLPGN+R VEFG+F TNGKAI++HT+LFFG+FTILIL
Sbjct: 1  MLDWAPILVGLLLFILLSPGLLFQLPGNNRTVEFGNFQTNGKAIVIHTLLFFGLFTILIL 60

Query: 61 AVDIHIFTG 70
          AV +HI+TG
Sbjct: 61 AVGVHIYTG 69

[Close]

BLAST of Clc03G04095 vs. NCBI nr
Match: PON95761.1 (hypothetical protein TorRG33x02_085900 [Trema orientale])

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-22
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAPVL G LLFILLSPGLLFQLPG++R VEFGSFTTNGKAI VHTI+FFGVFTILIL
Sbjct: 1  MLDWAPVLIGWLLFILLSPGLLFQLPGHTRPVEFGSFTTNGKAIFVHTIIFFGVFTILIL 60

Query: 61 AVDIHIFTG 70
          AV IHI TG
Sbjct: 61 AVGIHIVTG 69

[Close]

BLAST of Clc03G04095 vs. NCBI nr
Match: XP_022736846.1 (uncharacterized protein LOC111289789 [Durio zibethinus])

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-22
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAP+L GLLLFILLSPGLLFQLPGN+R VEFG+F TNGKA+++HT+LFFG+FTILIL
Sbjct: 1  MLDWAPILIGLLLFILLSPGLLFQLPGNTRTVEFGNFQTNGKAVMIHTLLFFGLFTILIL 60

Query: 61 AVDIHIFTG 70
          A+ IHI+TG
Sbjct: 61 ALGIHIYTG 69

[Close]

BLAST of Clc03G04095 vs. NCBI nr
Match: CAB4310900.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          M+DWAPVL GL+LFILLSPGLLFQ+PGN+R VEFGSFTTNGKAI+VHT++FFG+FTILIL
Sbjct: 1  MVDWAPVLLGLMLFILLSPGLLFQIPGNTRHVEFGSFTTNGKAILVHTLIFFGIFTILIL 60

Query: 61 AVDIHIFTG 70
          A  IHI TG
Sbjct: 61 AFGIHIHTG 69

[Close]

BLAST of Clc03G04095 vs. ExPASy TrEMBL
Match: A0A1S3AZR7 (uncharacterized protein LOC103484520 OS=Cucumis melo OX=3656 GN=LOC103484520 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 6.8e-28
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL
Sbjct: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60

Query: 61 AVDIHIFTG 70
          AVDIHIFTG
Sbjct: 61 AVDIHIFTG 69

[Close]

BLAST of Clc03G04095 vs. ExPASy TrEMBL
Match: A0A1R3HMJ8 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28147 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.6e-23
Identity = 56/69 (81.16%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAP+L GLLLFILLSPGLLFQLPGN+R VEFG+F TNGKAI++HT+LFFG+FTILIL
Sbjct: 1  MLDWAPILVGLLLFILLSPGLLFQLPGNNRTVEFGNFQTNGKAIVIHTLLFFGLFTILIL 60

Query: 61 AVDIHIFTG 70
          AV +HI+TG
Sbjct: 61 AVGVHIYTG 69

[Close]

BLAST of Clc03G04095 vs. ExPASy TrEMBL
Match: A0A2P5FD94 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_085900 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAPVL G LLFILLSPGLLFQLPG++R VEFGSFTTNGKAI VHTI+FFGVFTILIL
Sbjct: 1  MLDWAPVLIGWLLFILLSPGLLFQLPGHTRPVEFGSFTTNGKAIFVHTIIFFGVFTILIL 60

Query: 61 AVDIHIFTG 70
          AV IHI TG
Sbjct: 61 AVGIHIVTG 69

[Close]

BLAST of Clc03G04095 vs. ExPASy TrEMBL
Match: A0A6P5YA17 (uncharacterized protein LOC111289789 OS=Durio zibethinus OX=66656 GN=LOC111289789 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.5e-22
Identity = 55/69 (79.71%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAP+L GLLLFILLSPGLLFQLPGN+R VEFG+F TNGKA+++HT+LFFG+FTILIL
Sbjct: 1  MLDWAPILIGLLLFILLSPGLLFQLPGNTRTVEFGNFQTNGKAVMIHTLLFFGLFTILIL 60

Query: 61 AVDIHIFTG 70
          A+ IHI+TG
Sbjct: 61 ALGIHIYTG 69

[Close]

BLAST of Clc03G04095 vs. ExPASy TrEMBL
Match: A0A2P5DVF2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_028930 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          MLDWAPVL G LLFILLSPGLLFQLPG++R VEFGSFTTNGKAI VHTI+FFGVFTIL+L
Sbjct: 1  MLDWAPVLIGWLLFILLSPGLLFQLPGHTRPVEFGSFTTNGKAIFVHTIIFFGVFTILLL 60

Query: 61 AVDIHIFTG 70
          AV IHI TG
Sbjct: 61 AVGIHIVTG 69

[Close]

BLAST of Clc03G04095 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 46/69 (66.67%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 1   MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
           M DWAPVL G++LF++LSPGLLF LPGN+R V+FG   TNGKAI VHT++FF ++TILIL
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  AVDIHIFTG 70
           A+++HI+TG
Sbjct: 134 ALNLHIYTG 142

[Close]

BLAST of Clc03G04095 vs. TAIR 10
Match: AT5G40970.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-19
Identity = 44/69 (63.77%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          M DWAPVL G++LF++LSPGLLF LPG+   ++FG   TNGKAI VHT++FF  +TILIL
Sbjct: 1  MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIFFAAYTILIL 60

Query: 61 AVDIHIFTG 70
          AV++HI TG
Sbjct: 61 AVNLHITTG 69

[Close]

BLAST of Clc03G04095 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 85.1 bits (209), Expect = 2.4e-17
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          M DW PV+  ++LF+LL+PGLLFQ+P   R+VEFG+  T+G +I+VHTI+FFG+ TI  +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVDIHIFTG 70
          A+ +HI+TG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Clc03G04095 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.7 bits (208), Expect = 3.1e-17
Identity = 37/69 (53.62%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MLDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILIL 60
          M DW PVL  ++LF++LSPGLLFQ+P   R+VEFG+  T+G +I+VH I+FFG+ TI  +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVDIHIFTG 70
          A+++HI++G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Clc03G04095 vs. TAIR 10
Match: AT3G01950.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 82.0 bits (201), Expect = 2.0e-16
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 2  LDWAPVLFGLLLFILLSPGLLFQLPGNSRMVEFGSFTTNGKAIIVHTILFFGVFTILILA 61
          LDW PVL  ++ FI+LSPG+LFQLPG S+ VEFG F T+G +I++HT+LFF   TI ++A
Sbjct: 3  LDWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIA 62

Query: 62 VDIHIF 68
          + IHI+
Sbjct: 63 LHIHIY 68

The following BLAST results are available for this feature:

BLAST of Clc03G04095 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008439857.1	1.4e-27	100.00	PREDICTED: uncharacterized protein LOC103484520 [Cucumis melo]	[more]
OMO71657.1	1.8e-22	81.16	hypothetical protein COLO4_28147 [Corchorus olitorius]	[more]
PON95761.1	3.9e-22	86.96	hypothetical protein TorRG33x02_085900 [Trema orientale]	[more]
XP_022736846.1	5.1e-22	79.71	uncharacterized protein LOC111289789 [Durio zibethinus]	[more]
CAB4310900.1	6.7e-22	81.16	unnamed protein product [Prunus armeniaca]	[more]

BLAST of Clc03G04095 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G04095 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AZR7	6.8e-28	100.00	uncharacterized protein LOC103484520 OS=Cucumis melo OX=3656 GN=LOC103484520 PE=...	[more]
A0A1R3HMJ8	8.6e-23	81.16	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_28147 PE=4 SV=1	[more]
A0A2P5FD94	1.9e-22	86.96	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_085900 PE=4 SV...	[more]
A0A6P5YA17	2.5e-22	79.71	uncharacterized protein LOC111289789 OS=Durio zibethinus OX=66656 GN=LOC11128978...	[more]
A0A2P5DVF2	3.3e-22	85.51	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_028930 PE...	[more]

BLAST of Clc03G04095 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27030.1	1.2e-21	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G40970.1	2.5e-19	63.77	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.4e-17	55.07	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	3.1e-17	53.62	Protein of unknown function (DUF 3339)	[more]
AT3G01950.1	2.0e-16	57.58	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 e-value: 1.3E-30 score: 105.4
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF43	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G04095.1	Clc03G04095.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane