Clc03G04070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G04070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein transport protein Sec61 subunit gamma
Location	ClcChr03: 3985977 .. 3989284 (-)
RNA-Seq Expression	Clc03G04070
Synteny	Clc03G04070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTGAGCAATACAAAACTATCAACCCTAACAAACCAACGATATTGGGCCTATGGGCCAAAGCCCAATAAAACTAGTGGGCCATCTCAACATATATTTTTTTGTTTACTTGAGCTCTGCTTAGGTTAGCAAAATACCAATGAGAATGTTGATTGGTTTAATTTTACTATTTGAAACGTCTTATCTCGCTATTGATTTTTCAATTTCAAAGTAGATATGAAACTTATCATATAAGTAAACCGTAAGGTCAAATAAAAATGTGATGCGTTTAGAAAATATTTCAATGGAATGGTATAGGGTGGGAGATTACCCATTTGATTTGGATCATTCCTCAAAATAAAAGTTGAAACCCCCATGAGAAATTTACATGTTGTTGCCTTCATTTGGAAAATTGATCCAACCCATTTTTGTGCTATTATTATACCAATGGAAAACCTTTTATTTCTTTATATTTCTTGAGATAAATATGATAAATCTTATCAAGAGATAATACATTTATGAATGCGAAAGCAACTTAGGGTTTAAATTTTCACCTCTATATTTATTAAATCCAAAAAAGAAAAAAATAATAATAAGGCATTTGGAAAGTTGAATAATTAGAGAAAGTGAAGGAAGAGTTGAGAATGATGTTGTCTAAAAAATTGTTTTATTCTCATATTTGAATTAATTTTTATTTTCTATATTCTTCCTCTCAATTTCTAGGGAAAAGAATTGCTAGCTTTCAAATTTTCTTATCATAAATGACATTTCCTTCAGATTTTTTCCTTCTAATTTACTAATTATTTACGTCATGATCATCAATCAATTTTAACACAAAATCATAGGACAAACATAAATTTAGCTTAAAAAAAAAAAAAAAAAAAAAAAGAGAGAGAAAAAATCAACAACACTTAAATCTAGCCTCTGAAAAGATCCTAGTAACCCTTGATTGTGCTATTTACCATACTTTAGCCTCAAGCAAGCACACCGTAAGCGATGAGAGAGGGGTATTTCCGTGATTTCATATGTTGCGACAGTGCATCAATTTTGACCCAATCATCCCTAGTCTCCCAGCGTTCAAAGTATTTCTTCCTCCCTTTAAAAACCGCACACGGCCACAACTCGTTCGAACTGGAAACCAAATTTCGCGAAAAACATTTATTTTCTCGACGTTTACTTCGCATTTCGGAGCCATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGGTATGTTTCTTCCTTTCACATCATATTGCATAGATCTGATTCAATCGAGGTCTTAGATTTTTGTTTTCCCTTTCAATTTTATTCAATTCAACGTTTTGGTGGTGTAGAATTCACCAAGGTTGCCGTCCGTACCGCTATCGGATTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGGTTAGATTAGGTATGCATCCAATTCAATAGATCTTCTGTTTTTTCTTTTCGATCTGGCTTGTATTTGTTCTGCATAGCATCGTGGTCATATTATTCAATATATTTGCAATTATGGAATGGATCGACAATTTCTTTTTAAATTTTCGTTCGATGCACGGGCATGCTATATCTAGCATTCTTATGACATTGTATGATTCATGCATGATTGATTTACACGATTGAAGAATGATTGATTTACACGACTGAAGATCGTACGACTGCCATGGATGCTTTTTATATCATAATGTTCCTAATATTCAAGGCATTCTATCTCTGGATTTGCGTTTATTTCCTTCCAAGATGACTATGGTTGCGATTGCAAATCGTTGTGAAACATTATTGTAGAAGCACTTTGTTAGCTAACTCCTACGCTTCTATCGTGAAGGAGTAAATTTATGCGAGTGCCGATATTCAGATGATGTGGTTTCAATATCTAAGTCTACTTTGCTTTCTACCCCCTTTCATCTTTGTATGTTAAAACTGTAGAATTTGTACGTTTCTGAATGCTCTAGGTATTTGCTTCTTGCCTTCATTTTGTTTGAACCTTAATGAACATCTTAATAGTGCGCATGCGCATTCAATGACATATGTATATTATGAACCCTTTTGTGGAATCTTGGCATTTCCTCTACTCGCCCATCTCATAGTGTGCATGCACATTCAATCGTACTCACCTGCAAAACATTTCTTGATTAGATATGAGAGGAGGGCAGAGCCCAGAAAGAACGAGGGCAAATGTCCTCTCTTATTTTGTAAACTCAGAAGGCATCTATCAAGTACCTAAGTTTTTGCTCTTATCCCAAAAAAAAAAAAAAAAAAAGAATAGTACCTAAGTTCTCGCAGTTTTCCTCTAATTTGAGTGATGGAGGCTTAAGTGTGAAGATATTAAAGCAGAGGGGTATCTGTGAAAGGACTATTCAGTTTTCTTACAAACATCGAAAGAAGTGAGAAACTTTGGAGGCAGGCAGAGTGTAGGAACCGGATGCATGTTTGGAATGTACAACGGACTGAAGGATGTGGTTGTGATTATGTGAGAATGAGATTAATATTAGTATAATATGCATTTGAATGTCCATTAGGCAACCCCCCCGAAAAAAAAGCATAAGAACGAGAAGTCAGAGAATAAACAATTAGGAGTCGGATGCTGTATTTTGGAATGGCACAGCAATACAATTGTGAAACCCGATCTAAAGACTCATGCTTGCTAATCAAATGCTAGTATATTGTTTCTTTGTGAAAAAAAAATCTAGTTGGCGAGAGCTCCTTGTGGTGAATTTAGAATCTCTGTTTATCCTTTCCGTAAAGTATTTCTTTCTAGTCCATAGTTTGCATCTTTAACCCATTATTTTGGGACTATCAGTTCCACTTAATTTGTCAAGTCATGATTGCTGATTGATATTCCTCACCTTAGATCTGCTTGCTTTCCTTCCTTCAGCGACATTCATGCAATTATGTTCATGACAGTGGTTACTGGTTTTATTATAAAATAAATGTACATTCAATGAAGTGATTGAACGCATAGAAGGAAATTTAAGGTGTTCTTGTTGATGCTTGCTGGAACAGAAAATGTGTACCTTTGTTTAATACCACAACAGCCGGAACATTTATTTTCCCTACCTGCAACATTGTCAAAAGCTTACAACGTTAGGTAATTTATATCCTAATTCTTTTTGCCAATGGATTTTCAGGTCATGATGAAGTACGTAGGTGATGGCGGCTGGCGTTTACGTTTAGTGCAACCTGTGTTCATGGAGGAATACTTAGCATACTTAGCTCTCCTTTAG

mRNA sequence

ATGCCCTCAAGCAAGCACACCGTAAGCGATGAGAGAGGGTGCATCAATTTTGACCCAATCATCCCTAGTCTCCCAGCGTTCAAAGTATTTCTTCCTCCCTTTAAAAACCGCACACGGCCACAACTCGTTCGAACTGGAAACCAAATTTCGCGAAAAACATTTATTTTCTCGACGTTTACTTCGCATTTCGGAGCCATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGCCGTCCGTACCGCTATCGGATTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGATATGAGAGGAGGGCAGAGCCCAGAAAGAACGAGGGCAAATGTCCTCTCTTATTTTGTAAACTCAGAAGGCATCTATCAAGTCATGATGAAGTACGTAGGTGATGGCGGCTGGCGTTTACGTTTAGTGCAACCTGTGTTCATGGAGGAATACTTAGCATACTTAGCTCTCCTTTAG

Coding sequence (CDS)

ATGCCCTCAAGCAAGCACACCGTAAGCGATGAGAGAGGGTGCATCAATTTTGACCCAATCATCCCTAGTCTCCCAGCGTTCAAAGTATTTCTTCCTCCCTTTAAAAACCGCACACGGCCACAACTCGTTCGAACTGGAAACCAAATTTCGCGAAAAACATTTATTTTCTCGACGTTTACTTCGCATTTCGGAGCCATGGATGCCGTAGATTCAGTCGTTGATCCTCTCAGAGAGTTCGCCAAGGACAGCGTTCGTCTCGTTAAGAGATGTCATAAACCCGATCGCAAGGAATTCACCAAGGTTGCCGTCCGTACCGCTATCGGATTCGTTGTGATGGGATTTGTAGGGTTCTTTGTCAAGCTAATCTTCATTCCGATCAACAACATCATCGTCGGATCTGATATGAGAGGAGGGCAGAGCCCAGAAAGAACGAGGGCAAATGTCCTCTCTTATTTTGTAAACTCAGAAGGCATCTATCAAGTCATGATGAAGTACGTAGGTGATGGCGGCTGGCGTTTACGTTTAGTGCAACCTGTGTTCATGGAGGAATACTTAGCATACTTAGCTCTCCTTTAG

Protein sequence

MPSSKHTVSDERGCINFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGSDMRGGQSPERTRANVLSYFVNSEGIYQVMMKYVGDGGWRLRLVQPVFMEEYLAYLALL

Homology

[Close]

BLAST of Clc03G04070 vs. NCBI nr
Match: XP_022137357.1 (uncharacterized protein LOC111008832 isoform X1 [Momordica charantia])

HSP 1 Score: 168.3 bits (425), Expect = 6.4e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 15  INFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVD 74
           INFD IIPSL   KVFLPP  +        T ++   K   F TF+SH G MDAVDSVVD
Sbjct: 184 INFDQIIPSLATLKVFLPPQGH--------TSSKPETKLSRFLTFSSHLGEMDAVDSVVD 243

Query: 75  PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 134
           PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
Sbjct: 244 PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 294

[Close]

BLAST of Clc03G04070 vs. NCBI nr
Match: XP_022137358.1 (uncharacterized protein LOC111008832 isoform X2 [Momordica charantia])

HSP 1 Score: 168.3 bits (425), Expect = 6.4e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 15  INFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVD 74
           INFD IIPSL   KVFLPP  +        T ++   K   F TF+SH G MDAVDSVVD
Sbjct: 181 INFDQIIPSLATLKVFLPPQGH--------TSSKPETKLSRFLTFSSHLGEMDAVDSVVD 240

Query: 75  PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 134
           PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
Sbjct: 241 PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 291

[Close]

BLAST of Clc03G04070 vs. NCBI nr
Match: XP_020109933.1 (uncharacterized protein LOC109725239 isoform X1 [Ananas comosus])

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-30
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDAVDSVVDPLREFAKDS RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSFRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGSDMR-GGQSPERTRANVLSYFVNSEGIYQVMMKYVGDGGW 172
           INNIIVGSD R  G++ ++T    L Y + ++ + ++   +     W
Sbjct: 61  INNIIVGSDFRLNGKTGKKTAQATLIYRIANKLLQRLKWSFFSLKEW 107

[Close]

BLAST of Clc03G04070 vs. NCBI nr
Match: XP_020109935.1 (protein transport protein Sec61 subunit gamma isoform X3 [Ananas comosus])

HSP 1 Score: 138.7 bits (348), Expect = 5.4e-29
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDAVDSVVDPLREFAKDS RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSFRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGSDMR-GGQSPERT 145
           INNIIVGSD R  G++ ++T
Sbjct: 61  INNIIVGSDFRLNGKTGKKT 80

[Close]

BLAST of Clc03G04070 vs. NCBI nr
Match: WP_215388869.1 (protein translocase SEC61 complex subunit gamma, partial [Staphylococcus aureus])

HSP 1 Score: 135.2 bits (339), Expect = 6.0e-28
Identity = 76/103 (73.79%), Postives = 80/103 (77.67%), Query Frame = 0


Query: 31  LPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVDPLREFAKDSVRLVKRC 90
           LPP     R  +V  G++IS +            AMDAVDSVVDPLREFAKDSVRLVKRC
Sbjct: 2   LPP-SPHARDLVVVAGSEISPR--------PPAAAMDAVDSVVDPLREFAKDSVRLVKRC 61

Query: 91  HKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 134
           HKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIPINNIIVGS
Sbjct: 62  HKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIPINNIIVGS 95

[Close]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot
Match: P38385 (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.9e-30
Identity = 67/68 (98.53%), Postives = 67/68 (98.53%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA RTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAARTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGS 134
           INNIIVGS
Sbjct: 61  INNIIVGS 68

[Close]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot
Match: P0DI74 (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGS 134
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot
Match: P0DI75 (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.1e-29
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGS 134
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot
Match: Q9SMP2 (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 8.1e-28
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 126 INNIIVGS 134
           INNIIVGS
Sbjct: 61  INNIIVGS 68

[Close]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot
Match: Q7Z1B8 (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=213494 GN=SEC61G PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 6.6e-22
Identity = 51/68 (75.00%), Postives = 58/68 (85.29%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MD V   ++P R+FAKDS+RLVKRC KPDRKEF K+AV TAIGF +MGF+GFFVKLI IP
Sbjct: 1   MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRKEFQKIAVATAIGFCIMGFIGFFVKLIHIP 60

Query: 126 INNIIVGS 134
           INNIIVGS
Sbjct: 61  INNIIVGS 68

[Close]

BLAST of Clc03G04070 vs. ExPASy TrEMBL
Match: A0A6J1CA50 (uncharacterized protein LOC111008832 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 15  INFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVD 74
           INFD IIPSL   KVFLPP  +        T ++   K   F TF+SH G MDAVDSVVD
Sbjct: 181 INFDQIIPSLATLKVFLPPQGH--------TSSKPETKLSRFLTFSSHLGEMDAVDSVVD 240

Query: 75  PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 134
           PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
Sbjct: 241 PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 291

[Close]

BLAST of Clc03G04070 vs. ExPASy TrEMBL
Match: A0A6J1C817 (uncharacterized protein LOC111008832 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008832 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 3.1e-38
Identity = 91/119 (76.47%), Postives = 95/119 (79.83%), Query Frame = 0


Query: 15  INFDPIIPSLPAFKVFLPPFKNRTRPQLVRTGNQISRKTFIFSTFTSHFGAMDAVDSVVD 74
           INFD IIPSL   KVFLPP  +        T ++   K   F TF+SH G MDAVDSVVD
Sbjct: 184 INFDQIIPSLATLKVFLPPQGH--------TSSKPETKLSRFLTFSSHLGEMDAVDSVVD 243

Query: 75  PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 134
           PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS
Sbjct: 244 PLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIPINNIIVGS 294

[Close]

BLAST of Clc03G04070 vs. ExPASy TrEMBL
Match: A0A6P5GVU0 (uncharacterized protein LOC109725239 isoform X1 OS=Ananas comosus OX=4615 GN=LOC109725239 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.4e-30
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDAVDSVVDPLREFAKDS RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSFRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGSDMR-GGQSPERTRANVLSYFVNSEGIYQVMMKYVGDGGW 172
           INNIIVGSD R  G++ ++T    L Y + ++ + ++   +     W
Sbjct: 61  INNIIVGSDFRLNGKTGKKTAQATLIYRIANKLLQRLKWSFFSLKEW 107

[Close]

BLAST of Clc03G04070 vs. ExPASy TrEMBL
Match: A0A6P5GWD3 (protein transport protein Sec61 subunit gamma isoform X3 OS=Ananas comosus OX=4615 GN=LOC109725239 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.6e-29
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDAVDSVVDPLREFAKDS RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAVDSVVDPLREFAKDSFRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGSDMR-GGQSPERT 145
           INNIIVGSD R  G++ ++T
Sbjct: 61  INNIIVGSDFRLNGKTGKKT 80

[Close]

BLAST of Clc03G04070 vs. ExPASy TrEMBL
Match: A0A453NIA0 (Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 2.2e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 65  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFI 124
           AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVA+RTAIGFVVMGFVGFFVKLIFI
Sbjct: 28  AMDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAIRTAIGFVVMGFVGFFVKLIFI 87

Query: 125 PINNIIVGS 134
           PINNIIVGS
Sbjct: 88  PINNIIVGS 96

[Close]

BLAST of Clc03G04070 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-31
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGS 134
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Clc03G04070 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 131.3 bits (329), Expect = 8.0e-31
Identity = 64/68 (94.12%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           MDA+DSVVDPLR+FAKDS+RLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP
Sbjct: 1   MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 60

Query: 126 INNIIVGS 134
           INNIIVG+
Sbjct: 61  INNIIVGA 68

[Close]

BLAST of Clc03G04070 vs. TAIR 10
Match: AT3G48570.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 125.2 bits (313), Expect = 5.8e-29
Identity = 60/68 (88.24%), Postives = 66/68 (97.06%), Query Frame = 0


Query: 66  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLIFIP 125
           M+A+DS +DPLR+FAK SVRLV+RCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKL+FIP
Sbjct: 1   MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRKEFTKVAVRTAIGFVVMGFVGFFVKLVFIP 60

Query: 126 INNIIVGS 134
           INNIIVGS
Sbjct: 61  INNIIVGS 68

The following BLAST results are available for this feature:

BLAST of Clc03G04070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022137357.1	6.4e-38	76.47	uncharacterized protein LOC111008832 isoform X1 [Momordica charantia]	[more]
XP_022137358.1	6.4e-38	76.47	uncharacterized protein LOC111008832 isoform X2 [Momordica charantia]	[more]
XP_020109933.1	4.9e-30	69.16	uncharacterized protein LOC109725239 isoform X1 [Ananas comosus]	[more]
XP_020109935.1	5.4e-29	88.75	protein transport protein Sec61 subunit gamma isoform X3 [Ananas comosus]	[more]
WP_215388869.1	6.0e-28	73.79	protein translocase SEC61 complex subunit gamma, partial [Staphylococcus aureus]	[more]

BLAST of Clc03G04070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38385	3.9e-30	98.53	Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX...	[more]
P0DI74	1.1e-29	94.12	Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0DI75	1.1e-29	94.12	Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SMP2	8.1e-28	88.24	Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q7Z1B8	6.6e-22	75.00	Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=21349...	[more]

BLAST of Clc03G04070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CA50	3.1e-38	76.47	uncharacterized protein LOC111008832 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A6J1C817	3.1e-38	76.47	uncharacterized protein LOC111008832 isoform X1 OS=Momordica charantia OX=3673 G...	[more]
A0A6P5GVU0	2.4e-30	69.16	uncharacterized protein LOC109725239 isoform X1 OS=Ananas comosus OX=4615 GN=LOC...	[more]
A0A6P5GWD3	2.6e-29	88.75	protein transport protein Sec61 subunit gamma isoform X3 OS=Ananas comosus OX=46...	[more]
A0A453NIA0	2.2e-28	98.55	Uncharacterized protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 S...	[more]

BLAST of Clc03G04070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24920.1	8.0e-31	94.12	secE/sec61-gamma protein transport protein	[more]
AT5G50460.1	8.0e-31	94.12	secE/sec61-gamma protein transport protein	[more]
AT3G48570.1	5.8e-29	88.24	secE/sec61-gamma protein transport protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008158	Protein translocase SEC61 complex, gamma subunit	TIGRFAM	TIGR00327	TIGR00327	coord: 73..131 e-value: 1.4E-15 score: 54.8
IPR023391	Protein translocase SecE domain superfamily	GENE3D	1.20.5.820	Preprotein translocase SecE subunit	coord: 72..133 e-value: 1.1E-30 score: 107.1
IPR023391	Protein translocase SecE domain superfamily	SUPERFAMILY	103456	Preprotein translocase SecE subunit	coord: 70..130
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PFAM	PF00584	SecE	coord: 78..130 e-value: 1.5E-13 score: 50.4
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	PROSITE	PS01067	SECE_SEC61G	coord: 79..107
IPR001901	Protein translocase complex, SecE/Sec61-gamma subunit	HAMAP	MF_00422	SecE	coord: 74..129 score: 12.919514
None	No IPR available	PANTHER	PTHR12309	SEC61 GAMMA SUBUNIT	coord: 42..133
None	No IPR available	PANTHER	PTHR12309:SF24	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3	coord: 42..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G04070.2	Clc03G04070.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031204	posttranslational protein targeting to membrane, translocation
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0006605	protein targeting
biological_process	GO:0015031	protein transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0071261	Ssh1 translocon complex
cellular_component	GO:0016020	membrane
molecular_function	GO:0008320	protein transmembrane transporter activity