Clc03G02420 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G02420
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	histone H4
Location	ClcChr03: 2277103 .. 2278004 (+)
RNA-Seq Expression	Clc03G02420
Synteny	Clc03G02420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTCGCTTTCAACTCGACATCTTTGTCATTTAGCCAATAAGCTTGTGGGTTTTGAGGTTTCACAAGCCCAAAGTAATGAAGAAGAGCTAAAATATTGATAATCAAATTTCACCTTTGACTCACTCCTTTAATCCCTACACTTTTAATTATATAAATTAAGTATTTGTACATTAAAAATATTAAATTTAGTCATTTAGAGTAACTTTTTGTGAAAGGTAAAAAAAAAAAAAGGAAAACCATTGAAGTAGGATAACTAAATATAATTAAAATGGAGTACAAAAAGTTGCTTTTACTAATTTCTTGTTTATCGTTATTACAATTTATTTTAATAAATCCTCAATCCGCTTTTATCCAAAGAGAAAAAGAAGTCCTGAATCCGCGAGACAGATCCATCCAACCACTAAGGCACAATCCATGTGAAATCGAACGGTCACAAGAATAAATCCTTTCGACACACGGATTGGAATCCAACGGCCATCTTTCCATCTCATCCTCTATATAATTAACCAACTCTTTCGTCCTCTTCATACAGTAAGCGTCTCAGCCTATTCGCCGGAATTTCCTTCAAATCCTCTTCAAAGCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGAGGCATCGCAAGGTTCTAAGAGACAACATCCAAGGAATCACCAAGCCGGCCATTCGCCGTCTTGCCAGGCGTGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACTCGCGGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGACGCCGTCACCTACACTGAGCACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGAGGCAAGGTCGTACTCTGTATGGCTTTGGAGGTTAG

mRNA sequence

ATGCCTTCGCTTTCAACTCGACATCTTTGTCATTTAGCCAATAAGCTTGTGGGTTTTGAGGTTTCACAAGCCCAAACGTCTCAGCCTATTCGCCGGAATTTCCTTCAAATCCTCTTCAAAGCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGAGGCATCGCAAGGTTCTAAGAGACAACATCCAAGGAATCACCAAGCCGGCCATTCGCCGTCTTGCCAGGCGTGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACTCGCGGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGACGCCGTCACCTACACTGAGCACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGAGGCAAGGTCGTACTCTGTATGGCTTTGGAGGTTAG

Coding sequence (CDS)

ATGCCTTCGCTTTCAACTCGACATCTTTGTCATTTAGCCAATAAGCTTGTGGGTTTTGAGGTTTCACAAGCCCAAACGTCTCAGCCTATTCGCCGGAATTTCCTTCAAATCCTCTTCAAAGCAACAATGTCCGGCAGAGGCAAAGGAGGAAAAGGCCTCGGAAAGGGAGGAGCCAAGAGGCATCGCAAGGTTCTAAGAGACAACATCCAAGGAATCACCAAGCCGGCCATTCGCCGTCTTGCCAGGCGTGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACTCGCGGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGACGCCGTCACCTACACTGAGCACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGAGGCAAGGTCGTACTCTGTATGGCTTTGGAGGTTAG

Protein sequence

MPSLSTRHLCHLANKLVGFEVSQAQTSQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG

Homology

[Close]

BLAST of Clc03G02420 vs. NCBI nr
Match: XP_025887139.1 (uncharacterized protein LOC101252991 [Solanum lycopersicum])

HSP 1 Score: 209.1 bits (531), Expect = 2.5e-50
Identity = 110/130 (84.62%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 16  LVGFEVSQAQTSQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP 75
           L GF  SQ+   Q  +   L   F   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP
Sbjct: 98  LYGFGESQSPNHQKSKSTSLLYNFIRKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKP 157

Query: 76  AIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKR 135
           AIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRD+VTYTEHARRKTVTAMDVVYALKR
Sbjct: 158 AIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKR 217

Query: 136 QGRTLYGFGG 146
           QGRTLYGFGG
Sbjct: 218 QGRTLYGFGG 227

[Close]

BLAST of Clc03G02420 vs. NCBI nr
Match: PLY78886.1 (hypothetical protein LSAT_5X167041 [Lactuca sativa])

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 27  SQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 86
           S P+++  L++     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV
Sbjct: 51  SPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 110

Query: 87  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 111 KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 169

[Close]

BLAST of Clc03G02420 vs. NCBI nr
Match: CAB4099840.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 27  SQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 86
           S P+++  L++     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV
Sbjct: 36  SPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 95

Query: 87  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 96  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154

[Close]

BLAST of Clc03G02420 vs. NCBI nr
Match: VAH08308.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 208.0 bits (528), Expect = 5.5e-50
Identity = 111/124 (89.52%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 26  TSQPIRRNFLQILFK----ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 85
           T+ P  R FL    K    ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA
Sbjct: 36  TTTPPIRQFLAARTKASSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 95

Query: 86  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 145
           RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct: 96  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 155

[Close]

BLAST of Clc03G02420 vs. NCBI nr
Match: KVI06931.1 (Histone core [Cynara cardunculus var. scolymus])

HSP 1 Score: 208.0 bits (528), Expect = 5.5e-50
Identity = 108/124 (87.10%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 22  SQAQTSQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 81
           S+ +    I +   Q +  ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA
Sbjct: 86  SEREEQSVIGKCSFQEVVSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 145

Query: 82  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 141
           RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct: 146 RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 205

Query: 142 GFGG 146
           GFGG
Sbjct: 206 GFGG 209

[Close]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot
Match: P62785 (Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot
Match: P59259 (Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot
Match: Q6PMI5 (Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot
Match: Q6WZ83 (Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot
Match: Q6LAF3 (Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3)

HSP 1 Score: 201.4 bits (511), Expect = 6.8e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. ExPASy TrEMBL
Match: A0A6S7NPF6 (Histone H4 OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS27268 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 27  SQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 86
           S P+++  L++     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV
Sbjct: 36  SPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 95

Query: 87  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 96  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 154

[Close]

BLAST of Clc03G02420 vs. ExPASy TrEMBL
Match: A0A2J6KUW8 (Histone H4 OS=Lactuca sativa OX=4236 GN=LSAT_5X167041 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 2.0e-50
Identity = 106/119 (89.08%), Postives = 111/119 (93.28%), Query Frame = 0


Query: 27  SQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 86
           S P+++  L++     MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV
Sbjct: 51  SPPLQKLLLRLSINLKMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 110

Query: 87  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 111 KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 169

[Close]

BLAST of Clc03G02420 vs. ExPASy TrEMBL
Match: A0A446J5F3 (Histone H4 OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Av1G179140 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.7e-50
Identity = 111/124 (89.52%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 26  TSQPIRRNFLQILFK----ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 85
           T+ P  R FL    K    ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA
Sbjct: 36  TTTPPIRQFLAARTKASSSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 95

Query: 86  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 145
           RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct: 96  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 155

[Close]

BLAST of Clc03G02420 vs. ExPASy TrEMBL
Match: A0A118K435 (Histone H4 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014714 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.7e-50
Identity = 108/124 (87.10%), Postives = 112/124 (90.32%), Query Frame = 0


Query: 22  SQAQTSQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 81
           S+ +    I +   Q +  ATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA
Sbjct: 86  SEREEQSVIGKCSFQEVVSATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLA 145

Query: 82  RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 141
           RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct: 146 RRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 205

Query: 142 GFGG 146
           GFGG
Sbjct: 206 GFGG 209

[Close]

BLAST of Clc03G02420 vs. ExPASy TrEMBL
Match: K4AK23 (Histone H4 OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 3.5e-50
Identity = 107/119 (89.92%), Postives = 109/119 (91.60%), Query Frame = 0


Query: 27  SQPIRRNFLQILFKATMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 86
           S P     LQ+   + MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV
Sbjct: 32  SNPPASGELQVFAASAMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGV 91

Query: 87  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 92  KRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 150

[Close]

BLAST of Clc03G02420 vs. TAIR 10
Match: AT1G07660.1 (Histone superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. TAIR 10
Match: AT1G07820.1 (Histone superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. TAIR 10
Match: AT1G07820.2 (Histone superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. TAIR 10
Match: AT2G28740.1 (histone H4 )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of Clc03G02420 vs. TAIR 10
Match: AT3G45930.1 (Histone superfamily protein )

HSP 1 Score: 201.4 bits (511), Expect = 4.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 43  MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 102
           MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK
Sbjct: 1   MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK 60

Query: 103 IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 146
           IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct: 61  IFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

The following BLAST results are available for this feature:

BLAST of Clc03G02420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_025887139.1	2.5e-50	84.62	uncharacterized protein LOC101252991 [Solanum lycopersicum]	[more]
PLY78886.1	4.2e-50	89.08	hypothetical protein LSAT_5X167041 [Lactuca sativa]	[more]
CAB4099840.1	4.2e-50	89.08	unnamed protein product [Lactuca saligna]	[more]
VAH08308.1	5.5e-50	89.52	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KVI06931.1	5.5e-50	87.10	Histone core [Cynara cardunculus var. scolymus]	[more]

BLAST of Clc03G02420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P62785	6.8e-51	100.00	Histone H4 variant TH011 OS=Triticum aestivum OX=4565 PE=3 SV=2	[more]
P59259	6.8e-51	100.00	Histone H4 OS=Arabidopsis thaliana OX=3702 GN=At1g07660 PE=1 SV=2	[more]
Q6PMI5	6.8e-51	100.00	Histone H4 OS=Chelidonium majus OX=71251 PE=3 SV=3	[more]
Q6WZ83	6.8e-51	100.00	Histone H4 OS=Eucalyptus globulus OX=34317 PE=3 SV=3	[more]
Q6LAF3	6.8e-51	100.00	Histone H4 OS=Flaveria trinervia OX=4227 GN=hh4 PE=3 SV=3	[more]

BLAST of Clc03G02420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7NPF6	2.0e-50	89.08	Histone H4 OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS27268 PE=3 SV=1	[more]
A0A2J6KUW8	2.0e-50	89.08	Histone H4 OS=Lactuca sativa OX=4236 GN=LSAT_5X167041 PE=3 SV=1	[more]
A0A446J5F3	2.7e-50	89.52	Histone H4 OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_1Av1G179140 PE=3 S...	[more]
A0A118K435	2.7e-50	87.10	Histone H4 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_014714 PE=3 SV=1	[more]
K4AK23	3.5e-50	89.92	Histone H4 OS=Setaria italica OX=4555 PE=3 SV=1	[more]

BLAST of Clc03G02420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07660.1	4.8e-52	100.00	Histone superfamily protein	[more]
AT1G07820.1	4.8e-52	100.00	Histone superfamily protein	[more]
AT1G07820.2	4.8e-52	100.00	Histone superfamily protein	[more]
AT2G28740.1	4.8e-52	100.00	histone H4	[more]
AT3G45930.1	4.8e-52	100.00	Histone superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001951	Histone H4	PRINTS	PR00623	HISTONEH4	coord: 119..131 score: 90.05 coord: 47..58 score: 95.59 coord: 62..81 score: 93.38 coord: 104..118 score: 95.1 coord: 82..102 score: 93.56 coord: 131..142 score: 97.79
IPR001951	Histone H4	SMART	SM00417	h44	coord: 58..132 e-value: 2.0E-29 score: 113.7
IPR001951	Histone H4	CDD	cd00076	H4	coord: 60..143 e-value: 1.82662E-46 score: 143.796
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 44..145 e-value: 1.9E-58 score: 196.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 30..142
IPR035425	CENP-T/Histone H4, histone fold	PFAM	PF15511	CENP-T_C	coord: 79..138 e-value: 4.6E-8 score: 33.2
None	No IPR available	PANTHER	PTHR10484	HISTONE H4	coord: 22..145
None	No IPR available	PANTHER	PTHR10484:SF185	HISTONE H4	coord: 22..145
IPR019809	Histone H4, conserved site	PROSITE	PS00047	HISTONE_H4	coord: 57..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G02420.2	Clc03G02420.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity