Clc03G02170 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G02170
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	THO complex subunit 4A
Location	ClcChr03: 2014271 .. 2017178 (-)
RNA-Seq Expression	Clc03G02170
Synteny	Clc03G02170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGTGAAGGATTTGGGTTTTAACATCCCGATTTCGCTGAATCTTACTACCATCGCCATCCTCTACCTCTTCTTCTTCTACTACTACTACTACTTCTACTGCCAGTTTCTCATTCTTTTCAAAACGGACTTGGGTATTTTCTTTTTTTAATGTTTTCAAAAACATGGGGGTTTAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGTATTTCAGTTTTGGATTTGAGATTTCGAACATGAGTGTTCTTGTTTTCTTTGTCTTGTATGTATCGCTAAGGCTTGATTCTAATTTTATATGCAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGTGTGTTTTGAGTGTGCCATACACAAGGGCTCTTTTATGCTTTTAGCCACATCCTTACATTTGTTTGGATATTTATTCTTCTTAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGGTATACATTTCTTCAATTCACTTGTTCTTATTTCTAATTTTTTTTTTTTTTATTTACGTTTACAATTGCAATCATCTATTAACACAGTTAATGGTATATGTTCAGAAGTCGATACAAATTTTATTTGCTTTACAATAACTTTGTAAGGCCATGATTCGAACAATTGTTTCCTAGAGTTGTACTGGGGTTTAATGTGGATTTTTTGACATTTTCTTGTTGTTCTGACTTACTTTATAGTCAAATCGCTTTTCATTACTTTTTGACACGCCCGCCAAAAGTTTTGAAAAGATCAGATCAGACATAAGAATATTCAATTTCAACAGATTGAGATATGTGTGTACAGTGTACTTAGAGGAGGTATTTTTCTTGTAACACTAAGGATGTAGTAAATAACCCAGGGGGTTCCAACTAAGGAATGTTTTTTTGAGGGGGTGCTTTTGTGGGCTTATGCCCTCGTATTCTTTCATTTTTTCTCGGTGAAAGTTGTTGATTCAATAATAATAAAAATAAATAAAATAAAATAAAATAAAATAAAAGGTGGTAAATTTTAAATCAATATTATGTGTCTTGAAGAAAGAGGGTTGAACTTGTATGAGGAAAAGAGTGAATATAGAGGGGAAAAGGTAAGAGAAAGCACATACACACCCATGTGCACACGTATCTATATTTATAATGAACAACTGAACTTTCAAAGGTAAAAGAATTCAAGTGCATAAAAAAGAAAAAAAGAGCCCACAAAAGGAGGCAAACTAAACATAAATTGTATCCATGATTGTCAATTTTGTTTGTGATGACAATGTGTTTCTAGGTGCTTGTGCATACAACAGTTTTTATTTTACGGCATGTAATTAGCTACTTTTTAATCTTTATTAATATTCTTTTTAACAACTGTGGGTGTCTGATGTATCAGGAAAAGCAAAAAAAAGAAAGAAAAAAAACACAACTGGGGTGTCTGACCAACTTATTCACACCTTGGCTAATAGTATAAAAAGAAAACCACATAAACCTACCTCTGGTGTTGGAAAACTGGGTATAAGTATCTTTAGGTATTTGAGTGTAGGTCTACAATTCATCTATTTGATCACTACAAAAATTTGTTGTGGATTAAACTTACAAGATTCTCCCGACATTAAGGGTTCGAGTTTTACCACATTTTATGCAAGAACTTGATTTGGATTCCTTCTTTTGGACATTAAACCTTATAGAAAAGAGTCTAGATAATGATAACTTGGATAGTCTAGTGACCGAGTTTATTGAATTAAAGATGAAACATCGAGTTACAAGAAATAAGTTTTTGCGGCATTGTGGGGGGTGTGTGCTATTATGTGGGGCCATTTGGAGGGAGAAATAATAGGATCTTTAGAGGGCTTGTGAGGTCTTTGGTAGTTATGTTGTGCACATGATCATGCATTTGCTTGTGTAGATTTTGATAGGAATGCAATAAGGAATGGTAAAAGGGCATATTAGTAATTAGGGTAGGTGGTTATGGAAGATGGAGAAAGGAATGAGGGAGTTAGGCATCTGGTGAGTAAACTAGGTGCAAGTATCTTGAATTTTACTTGTGTCTTGTAATTTCTTCTTGATATTGCAACATATTAGTTTCCTATATTTTTCTGTGTTTGGATACCAACATATTTCAATTTTATGAATGACCCTGTCCTTTTTATGCTTCAGTTGGTGCTAAAGTATGATCTGGTAGTTATGTTTTATGTATTTTAAATGAAATTGCTGAATTCTAGCCTTTTCACCGATTTTGATTGCTATTATTAATTCTCTTAATCAGCATATATTTAATAATTCTCATTTGATTTTAACAGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

mRNA sequence

ATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

Coding sequence (CDS)

ATGGCAGAGCCTCTCGACATGAGCTTGGATGATATCATCAAGAAGAACAAGAAACCCGGATCTTCAAACTTCAGAGGTCGTGGCGGAGCTTCTTCTGGACCAGGTCCTTCTCGCCGCTTTCGCAATCGCGGTCTTAATAGACCAGCGCCCTATTCTACTGCCAAGGCGCCCGAGACGGCTTGGTCACACGAAATGTTTGTAGATCACGGTGCGGCATATCCTTCACAGCCTCCACGGGCCTCTGCTATTGAAACTGGCACCAAGCTTTATGTTTCTAATTTGGATTATGGTGTCTCCAACGAGGACATCAAGGAACTCTTTTCTGAAGTTGGTGATCTCAAACGATATTCTATCAATTATGATAAAAGTGGGAGATCAAAGGGAACAGCAGAAATTGTTTTTTCACGACAATCAGATGCCCTTGCTGCTATAAAGAGATATAACAATGTTCAGCTAGATGGGAAACCCATGAAGTTGGAGATCGTGGGATCTAACATCGTGACACCAGCTGTGCCTGCATCTACAAATCCCAGTTTTGGGAATCCAAATGGATTTCCGAGAGGTGGACGTGTACTGGGTCGAAACCGGGGTGGTGGACGAGGACGTGGTCCTGGAAGAGGAGGGCGTGGACGTGGGAGTGGGAGTGGGAGTGGCAGAGGTCGTGGAGAGAAGTTATCAGCTGAAGATCTAGATGCTGATTTGGAGAAGTACCATGAAGAAGCGATGCAGATCAATTAA

Protein sequence

MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQIN

Homology

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BLAST of Clc03G02170 vs. NCBI nr
Match: XP_038895300.1 (THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subunit 4A-like [Benincasa hispida])

HSP 1 Score: 443.7 bits (1140), Expect = 1.0e-120
Identity = 233/245 (95.10%), Postives = 236/245 (96.33%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFRGRGGASSGPGPSRRFRNRGLNR APYS AKAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSNAKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPAS+N  FG
Sbjct: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPASSNAGFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           NPNGFPRGGR LGRNRGGGRGRGPGRGGRGR  GSGSGRGRGEKLSAEDLDADLEKYHEE
Sbjct: 181 NPNGFPRGGRALGRNRGGGRGRGPGRGGRGR--GSGSGRGRGEKLSAEDLDADLEKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 243

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BLAST of Clc03G02170 vs. NCBI nr
Match: XP_008457549.1 (PREDICTED: THO complex subunit 4A [Cucumis melo])

HSP 1 Score: 436.0 bits (1120), Expect = 2.1e-118
Identity = 226/245 (92.24%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N NGFPRGGR +GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 245

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BLAST of Clc03G02170 vs. NCBI nr
Match: XP_004149042.2 (THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical protein Csa_019988 [Cucumis sativus])

HSP 1 Score: 429.5 bits (1103), Expect = 2.0e-116
Identity = 227/250 (90.80%), Postives = 235/250 (94.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRG-GRGR----GSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGR +GRNRGGGRGRGPGRG GRGR    GSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

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BLAST of Clc03G02170 vs. NCBI nr
Match: KAG6583468.1 (THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 427.6 bits (1098), Expect = 7.5e-116
Identity = 226/245 (92.24%), Postives = 232/245 (94.69%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVG+NIVTPA+PAS N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAIPASANGNFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           NPNGF RGG VLGRNRGGGRGRGPGRGGRGRGS   S RGRGEKLSAEDLDADLEKYHEE
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS---SSRGRGEKLSAEDLDADLEKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 242

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BLAST of Clc03G02170 vs. NCBI nr
Match: XP_022964653.1 (THO complex subunit 4B-like [Cucurbita moschata])

HSP 1 Score: 426.8 bits (1096), Expect = 1.3e-115
Identity = 226/245 (92.24%), Postives = 232/245 (94.69%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHG+AYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVG+NIVTPAVPAS N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           NPNGF RGG VLGRNRGGGRGRGPGRGGRGRGS   S RGRGEKLSAEDLDADLEKYHEE
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS---SSRGRGEKLSAEDLDADLEKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 242

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BLAST of Clc03G02170 vs. ExPASy Swiss-Prot
Match: Q8L773 (THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 4.8e-65
Identity = 153/250 (61.20%), Postives = 187/250 (74.80%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP-RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + GN NG P RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL+
Sbjct: 181 ANGNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYH   M+ N
Sbjct: 241 KYHSGDMETN 244

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BLAST of Clc03G02170 vs. ExPASy Swiss-Prot
Match: Q8L719 (THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 8.4e-62
Identity = 158/290 (54.48%), Postives = 187/290 (64.48%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKP----------GSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK N+KP          G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHEMFVDH---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +++F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGSNIVTPAVP---------------ASTNPSF-----GNPNGFPRG---GRVLGRNR 240
           EIVG+N+  PA+P                + N +F     GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRG---PGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 244
           GGG G G    GRG RGRG     GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

[Close]

BLAST of Clc03G02170 vs. ExPASy Swiss-Prot
Match: B5FXN8 (THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-40
Identity = 119/261 (45.59%), Postives = 153/261 (58.62%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKP-----GSSNFRGRGGASSGPGPSR-----------RFRNR- 60
           MA+ +DMSLDDIIK N+       G    RGRGG + G GP R             RNR 
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGASRGGRGGRGRGGTARGGGPGRGGVGGGRAGGGPVRNRP 60

Query: 61  ------GLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYG 120
                 G NRPAPYS  K     W H++F D G          + +ETG KL VSNLD+G
Sbjct: 61  VMARGGGRNRPAPYSRPKQLPEKWQHDLF-DSGFG------AGAGVETGGKLLVSNLDFG 120

Query: 121 VSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPM 180
           VS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+PM
Sbjct: 121 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 180

Query: 181 KLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGS 239
            +++V S I T   PA +     N  G  R   VLG   GGG  RG   G RGR  G G+
Sbjct: 181 NIQLVTSQIDTQRRPAQS----VNRGGMTRNRGVLGGFGGGGNRRGTRGGNRGR--GRGA 240

[Close]

BLAST of Clc03G02170 vs. ExPASy Swiss-Prot
Match: Q6NQ72 (THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.7e-38
Identity = 123/290 (42.41%), Postives = 162/290 (55.86%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGS-------SNFRGRGGASSGPGPSRRFRNRGLNRPAPYST 60
           M+  L+M+LD+I+K+ K   S          RGRGG   G GP+RR       RP+ ++ 
Sbjct: 1   MSGALNMTLDEIVKRGKTARSGGRGISRGRGRGRGGGGRGAGPARRGPLAVNARPSSFTI 60

Query: 61  AK----APETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSE 120
            K         W   +F D   A       AS +E GT+L+V+NLD GV+NEDI+ELFSE
Sbjct: 61  NKPVRRVRSLPWQSGLFEDGLRA-----AGASGVEVGTRLHVTNLDQGVTNEDIRELFSE 120

Query: 121 VGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTP 180
           +G+++RY+I+YDK+GR  GTAE+V+ R+SDA  A+K+YNNV LDG+PM+LEI+G N  + 
Sbjct: 121 IGEVERYAIHYDKNGRPSGTAEVVYPRRSDAFQALKKYNNVLLDGRPMRLEILGGNNSSE 180

Query: 181 A-VPASTNPSFGNPNG-------FPRGGRVLGRNRGGGRGRGP----------------- 240
           A +    N +    NG         +GG   GR RGG  GRGP                 
Sbjct: 181 APLSGRVNVNVTGLNGRLKRTVVIQQGGGGRGRVRGGRGGRGPAPTVSRRLPIHNQQGGG 240

Query: 241 ---GRGG---RGRGSGS---GSGRGRGEK---LSAEDLDADLEKYHEEAM 243
              GRGG   RGRG+G    G GRG G+K    SA DLD DLE YH +AM
Sbjct: 241 MRGGRGGFRARGRGNGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAM 285

[Close]

BLAST of Clc03G02170 vs. ExPASy Swiss-Prot
Match: O08583 (THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3)

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-38
Identity = 115/265 (43.40%), Postives = 151/265 (56.98%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKP----GSSNFRGRGGASSGPGPSRR-----------FRNR-- 60
           MA+ +DMSLDDIIK N+      G    RGR G+  G G + +            RNR  
Sbjct: 1   MADKMDMSLDDIIKLNRSQRGGRGGGRGRGRAGSQGGRGGAVQAAARVNRGGGPMRNRPA 60

Query: 61  --------GLNRPAPYSTAKAPETAWSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLD 120
                   G NRPAPYS  K     W H++F D G          + +ETG KL VSNLD
Sbjct: 61  IARGAAGGGRNRPAPYSRPKQLPDKWQHDLF-DSGFG------GGAGVETGGKLLVSNLD 120

Query: 121 YGVSNEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGK 180
           +GVS+ DI+ELF+E G LK+ +++YD+SGRS GTA++ F R++DAL A+K+YN V LDG+
Sbjct: 121 FGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 180

Query: 181 PMKLEIVGSNIVTPAVPASTNPSFGNPNGFPRGGRVLGRNRGGGRGRGPGRGGRG--RGS 239
           PM +++V S I T   PA +           RGG    R  GG  G G  RG RG  RG 
Sbjct: 181 PMNIQLVTSQIDTQRRPAQS---------INRGGMTRNRGSGGFGGGGTRRGTRGGSRGR 240

[Close]

BLAST of Clc03G02170 vs. ExPASy TrEMBL
Match: A0A1S3C5R6 (THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1)

HSP 1 Score: 436.0 bits (1120), Expect = 1.0e-118
Identity = 226/245 (92.24%), Postives = 234/245 (95.51%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEI+FSR +DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEILFSRPADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N NGFPRGGR +GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADL+KYHEE
Sbjct: 181 NHNGFPRGGRAMGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLDKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 245

[Close]

BLAST of Clc03G02170 vs. ExPASy TrEMBL
Match: A0A0A0LUQ3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV=1)

HSP 1 Score: 429.5 bits (1103), Expect = 9.5e-117
Identity = 227/250 (90.80%), Postives = 235/250 (94.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFR RGGASSGPGPSRRFRNRGLNR  PYST+KAPETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRARGGASSGPGPSRRFRNRGLNRATPYSTSKAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPS PPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGD+KRYSINY
Sbjct: 61  WSHDMFVDHGAAYPSHPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDVKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG+NIVTPAVPA +N SFG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKPMKLEIVGTNIVTPAVPAPSNASFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRG-GRGR----GSGSGSGRGRGEKLSAEDLDADLE 240
           NPNGFPRGGR +GRNRGGGRGRGPGRG GRGR    GSGSGSGRG GEKLSAEDLDADL+
Sbjct: 181 NPNGFPRGGRAMGRNRGGGRGRGPGRGRGRGRGSGSGSGSGSGRGHGEKLSAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYHEEAMQIN
Sbjct: 241 KYHEEAMQIN 250

[Close]

BLAST of Clc03G02170 vs. ExPASy TrEMBL
Match: A0A6J1HLI4 (THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 6.2e-116
Identity = 226/245 (92.24%), Postives = 232/245 (94.69%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 1   MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHG+AYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDMFVDHGSAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVG+NIVTPAVPAS N +FG
Sbjct: 121 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKHMKLEIVGTNIVTPAVPASANGNFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           NPNGF RGG VLGRNRGGGRGRGPGRGGRGRGS   S RGRGEKLSAEDLDADLEKYHEE
Sbjct: 181 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGRGS---SSRGRGEKLSAEDLDADLEKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 242

[Close]

BLAST of Clc03G02170 vs. ExPASy TrEMBL
Match: A0A6J1I3N4 (THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 1.4e-115
Identity = 226/245 (92.24%), Postives = 231/245 (94.29%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           MAEPLDMSLDDIIK NKK GSSNFRGRGGASSGPGPSRRFRNRGLNR APYSTA+APETA
Sbjct: 37  MAEPLDMSLDDIIKNNKKSGSSNFRGRGGASSGPGPSRRFRNRGLNRAAPYSTAQAPETA 96

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH+MFVDHGAAYPSQP RASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 97  WSHDMFVDHGAAYPSQPARASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 156

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAEIVFSRQ+DALAAIKRYNNVQLDGK MKLEIVG+NIVTPAVPAS N +FG
Sbjct: 157 DKSGRSKGTAEIVFSRQADALAAIKRYNNVQLDGKLMKLEIVGTNIVTPAVPASANGNFG 216

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           NPNGF RGG VLGRNRGGGRGRGPGRGGRG GS   S RGRGEKLSAEDLDADLEKYHEE
Sbjct: 217 NPNGFRRGGHVLGRNRGGGRGRGPGRGGRGHGS---SSRGRGEKLSAEDLDADLEKYHEE 276

Query: 241 AMQIN 246
           AMQIN
Sbjct: 277 AMQIN 278

[Close]

BLAST of Clc03G02170 vs. ExPASy TrEMBL
Match: A0A6J1G9Y5 (THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452298 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 1.9e-109
Identity = 212/245 (86.53%), Postives = 223/245 (91.02%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRGGASSGPGPSRRFRNRGLNRPAPYSTAKAPETA 60
           M +PLD SLDDIIK NKK GSSNFRGRGGASSGP PSRRF NRGLNR APYS AKAPET 
Sbjct: 1   MVDPLDTSLDDIIKNNKKSGSSNFRGRGGASSGPAPSRRFYNRGLNRAAPYSRAKAPETP 60

Query: 61  WSHEMFVDHGAAYPSQPPRASAIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120
           WSH++FVDHG AYPS P RAS IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY
Sbjct: 61  WSHDLFVDHGVAYPSHPARASTIETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYSINY 120

Query: 121 DKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNPSFG 180
           DKSGRSKGTAE+VFSRQ+DALAAIKRYNNVQLDGKPMKLEIVG+NIVTP +PAS+NP+FG
Sbjct: 121 DKSGRSKGTAEVVFSRQADALAAIKRYNNVQLDGKPMKLEIVGANIVTPVLPASSNPNFG 180

Query: 181 NPNGFPRGGRVLGRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEE 240
           N +GF RGGR LGRNRGGGRGRGPGRGGRGR    G+GRG GEKLSAEDLDADLEKYHEE
Sbjct: 181 NSSGFLRGGRALGRNRGGGRGRGPGRGGRGR----GNGRGGGEKLSAEDLDADLEKYHEE 240

Query: 241 AMQIN 246
           AMQIN
Sbjct: 241 AMQIN 241

[Close]

BLAST of Clc03G02170 vs. TAIR 10
Match: AT5G59950.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.2 bits (635), Expect = 3.4e-66
Identity = 153/250 (61.20%), Postives = 187/250 (74.80%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP-RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + GN NG P RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL+
Sbjct: 181 ANGNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYH   M+ N
Sbjct: 241 KYHSGDMETN 244

[Close]

BLAST of Clc03G02170 vs. TAIR 10
Match: AT5G59950.5 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 248.8 bits (634), Expect = 4.4e-66
Identity = 153/251 (60.96%), Postives = 187/251 (74.50%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +AKAPE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQSAKAPE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP--RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADL 240
           + GN NG P  RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL
Sbjct: 181 ANGNSNGAPWSRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADL 240

Query: 241 EKYHEEAMQIN 246
           +KYH   M+ N
Sbjct: 241 DKYHSGDMETN 245

[Close]

BLAST of Clc03G02170 vs. TAIR 10
Match: AT5G59950.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-63
Identity = 151/250 (60.40%), Postives = 185/250 (74.00%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKPGSSNFRGRG-GASSGPGPSRRFR-NRGLNRPAPYSTAKAPE 60
           M+  LDMSLDD+I KN+K        RG G+ SGPGP+RR   NR   R APY +  APE
Sbjct: 1   MSTGLDMSLDDMIAKNRKSRGGAGPARGTGSGSGPGPTRRNNPNRKSTRSAPYQS--APE 60

Query: 61  TAWSHEMFVDHGAAYPSQPPRASA-IETGTKLYVSNLDYGVSNEDIKELFSEVGDLKRYS 120
           + W H+MF D    + S   R+SA IETGTKLY+SNLDYGV NEDIKELF+EVG+LKRY+
Sbjct: 61  STWGHDMFSDRSEDHRS--GRSSAGIETGTKLYISNLDYGVMNEDIKELFAEVGELKRYT 120

Query: 121 INYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKLEIVGSNIVTPAVPASTNP 180
           +++D+SGRSKGTAE+V+SR+ DALAA+K+YN+VQLDGKPMK+EIVG+N+ T A P S  P
Sbjct: 121 VHFDRSGRSKGTAEVVYSRRGDALAAVKKYNDVQLDGKPMKIEIVGTNLQTAAAP-SGRP 180

Query: 181 SFGNPNGFP-RGGRVL-GRNRGGGRGRGPGRGGRGRGSGSGSGRGRGEKLSAEDLDADLE 240
           + GN NG P RGG+   G+ RGGGRG G GRGG GR  G   G+G  EK+SAEDLDADL+
Sbjct: 181 ANGNSNGAPWRGGQGRGGQQRGGGRG-GGGRGGGGR--GRRPGKGPAEKISAEDLDADLD 240

Query: 241 KYHEEAMQIN 246
           KYH   M+ N
Sbjct: 241 KYHSGDMETN 242

[Close]

BLAST of Clc03G02170 vs. TAIR 10
Match: AT5G02530.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 239.2 bits (609), Expect = 3.5e-63
Identity = 158/288 (54.86%), Postives = 187/288 (64.93%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKP----------GSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK N+KP          G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHEMFVDH---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +++F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGSNIVTPAVP---------------ASTNPSF-----GNPNGFPRG-GRVLGRNRGG 240
           EIVG+N+  PA+P                + N +F     GN NG  RG G  +GR RGG
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGGFMGRPRGG 240

Query: 241 GRGRG---PGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 244
           G G G    GRG RGRG     GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 288

[Close]

BLAST of Clc03G02170 vs. TAIR 10
Match: AT5G02530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 238.4 bits (607), Expect = 6.0e-63
Identity = 158/290 (54.48%), Postives = 187/290 (64.48%), Query Frame = 0


Query: 1   MAEPLDMSLDDIIKKNKKP----------GSSNFRGRGGASSGPGPSRRFRNRGLNRPAP 60
           M+  LDMSLDDIIK N+KP          G +N  GRGG+ S  GPSRRF NR   R AP
Sbjct: 1   MSGGLDMSLDDIIKSNRKPTGSRGRGGIGGGNNTGGRGGSGSNSGPSRRFANRVGARTAP 60

Query: 61  YS----TAKAPETAWSHEMFVDH---GAAYPSQPPR----ASAIETGTKLYVSNLDYGVS 120
           YS      +A +  W +++F       AA+           S+IETGTKLY+SNLDYGVS
Sbjct: 61  YSRPIQQQQAHDAMWQNDVFATDASVAAAFGHHQTAVVGGGSSIETGTKLYISNLDYGVS 120

Query: 121 NEDIKELFSEVGDLKRYSINYDKSGRSKGTAEIVFSRQSDALAAIKRYNNVQLDGKPMKL 180
           NEDIKELFSEVGDLKRY I+YD+SGRSKGTAE+VFSR+ DALAA+KRYNNVQLDGK MK+
Sbjct: 121 NEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKI 180

Query: 181 EIVGSNIVTPAVP---------------ASTNPSF-----GNPNGFPRG---GRVLGRNR 240
           EIVG+N+  PA+P                + N +F     GN NG  RG   G  +GR R
Sbjct: 181 EIVGTNLSAPALPILATAQIPFPTNGILGNFNENFNGNFNGNFNGNFRGRGRGGFMGRPR 240

Query: 241 GGGRGRG---PGRGGRGRGSGSGSGRGRGEKLSAEDLDADLEKYHEEAMQ 244
           GGG G G    GRG RGRG     GRGR E +SAEDLDA+L+KYH+EAM+
Sbjct: 241 GGGFGGGNFRGGRGARGRGGRGSGGRGRDENVSAEDLDAELDKYHKEAME 290

The following BLAST results are available for this feature:

BLAST of Clc03G02170 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895300.1	1.0e-120	95.10	THO complex subunit 4A-like [Benincasa hispida] >XP_038895301.1 THO complex subu...	[more]
XP_008457549.1	2.1e-118	92.24	PREDICTED: THO complex subunit 4A [Cucumis melo]	[more]
XP_004149042.2	2.0e-116	90.80	THO complex subunit 4A isoform X1 [Cucumis sativus] >KGN65665.1 hypothetical pro...	[more]
KAG6583468.1	7.5e-116	92.24	THO complex subunit 4A, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964653.1	1.3e-115	92.24	THO complex subunit 4B-like [Cucurbita moschata]	[more]

BLAST of Clc03G02170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L773	4.8e-65	61.20	THO complex subunit 4A OS=Arabidopsis thaliana OX=3702 GN=ALY1 PE=1 SV=1	[more]
Q8L719	8.4e-62	54.48	THO complex subunit 4B OS=Arabidopsis thaliana OX=3702 GN=ALY2 PE=1 SV=1	[more]
B5FXN8	1.8e-40	45.59	THO complex subunit 4 OS=Taeniopygia guttata OX=59729 GN=ALYREF PE=2 SV=1	[more]
Q6NQ72	1.7e-38	42.41	THO complex subunit 4D OS=Arabidopsis thaliana OX=3702 GN=ALY4 PE=1 SV=1	[more]
O08583	2.9e-38	43.40	THO complex subunit 4 OS=Mus musculus OX=10090 GN=Alyref PE=1 SV=3	[more]

BLAST of Clc03G02170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C5R6	1.0e-118	92.24	THO complex subunit 4A OS=Cucumis melo OX=3656 GN=LOC103497214 PE=4 SV=1	[more]
A0A0A0LUQ3	9.5e-117	90.80	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G480690 PE=4 SV...	[more]
A0A6J1HLI4	6.2e-116	92.24	THO complex subunit 4B-like OS=Cucurbita moschata OX=3662 GN=LOC111464665 PE=4 S...	[more]
A0A6J1I3N4	1.4e-115	92.24	THO complex subunit 4A-like OS=Cucurbita maxima OX=3661 GN=LOC111469372 PE=4 SV=...	[more]
A0A6J1G9Y5	1.9e-109	86.53	THO complex subunit 4A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]

BLAST of Clc03G02170 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G59950.1	3.4e-66	61.20	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.5	4.4e-66	60.96	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G59950.3	1.2e-63	60.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.2	3.5e-63	54.86	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G02530.1	6.0e-63	54.48	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 227..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..245
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..245
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 1..244
None	No IPR available	PANTHER	PTHR19965:SF74	CHROMATIN TARGET OF PRMT1 PROTEIN-RELATED	coord: 1..244
None	No IPR available	CDD	cd12680	RRM_THOC4	coord: 87..161 e-value: 5.67155E-45 score: 143.549
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 88..160 e-value: 1.7E-19 score: 80.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 89..157 e-value: 6.4E-16 score: 57.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 87..164 score: 16.466022
IPR025715	Chromatin target of PRMT1 protein, C-terminal	SMART	SM01218	FoP_duplication_2	coord: 175..245 e-value: 2.3E-14 score: 63.7
IPR025715	Chromatin target of PRMT1 protein, C-terminal	PFAM	PF13865	FoP_duplication	coord: 189..238 e-value: 7.9E-7 score: 29.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 71..225 e-value: 1.8E-27 score: 98.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 56..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G02170.2	Clc03G02170.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006406	mRNA export from nucleus
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding