Clc03G01670 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01670
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr03: 1413755 .. 1414222 (+)
RNA-Seq Expression	Clc03G01670
Synteny	Clc03G01670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGATTCCTGTTGGTAGGCGTCATTATTCTCGTCGTATTTTTATTCATCTTCCTTTTTCATTACTACCAATACCAACTTAGGCTGTACCAAACAAGAACCCTAGACATCGAGCAACGACTCCATGAAAATCATGCAGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGCTGTATGGTTCATGTTGTATCTCAGAATAATAACTCCCAAGAAAATCAAGCTTAG

mRNA sequence

ATGGGATTCCTGTTGGTAGGCGTCATTATTCTCGTCGTATTTTTATTCATCTTCCTTTTTCATTACTACCAATACCAACTTAGGCTGTACCAAACAAGAACCCTAGACATCGAGCAACGACTCCATGAAAATCATGCAGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGCTGTATGGTTCATGTTGTATCTCAGAATAATAACTCCCAAGAAAATCAAGCTTAG

Coding sequence (CDS)

ATGGGATTCCTGTTGGTAGGCGTCATTATTCTCGTCGTATTTTTATTCATCTTCCTTTTTCATTACTACCAATACCAACTTAGGCTGTACCAAACAAGAACCCTAGACATCGAGCAACGACTCCATGAAAATCATGCAGCACGACTCTTTGCTCGGCTTCAAGCCGAAATTATACGGCAACAGCAGGCAGCGCAACCAAACGCAGCGGAGCATGAAGAAACCTCCTCGGCTACCATGACGGTCGCTTACAAAGACGTGATCGAGACGTCGGACAAAGCCGATTGCTGTGCCATTTGCATTGAAGGGTTTGAGGAGGAAGAGATTTGTGGAGTTGTTGAGAGTTGTGCCCATTGTTTTCATAAGGATTGTATAGACCAATGGCTGAGGATTGAGAGACGTTGCCCATTGTGCCGCTGTATGGTTCATGTTGTATCTCAGAATAATAACTCCCAAGAAAATCAAGCTTAG

Protein sequence

MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQQQAAQPNAAEHEETSSATMTVAYKDVIETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNSQENQA

Homology

[Close]

BLAST of Clc03G01670 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 176.8 bits (447), Expect = 1.5e-40
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MGFL V V+ ++  L IFLFH Y Y+LRL QTRTLDIEQRLHE+   +L A+ QAEIIRQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 61  QQAA--QPNAAEHEETSSATMTVAYK-DVIETSDKADCCAICIEGFEEEEICGVVESCAH 120
           +Q      +  E EETSSA MTVAYK    E      CCAICIE FE+EEICGVVESC H
Sbjct: 61  RQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGH 120

Query: 121 CFHKDCIDQWLRIERRCPLCRCMVHVVSQ 147
           CFH+DC+DQWLRIE RCPLCRC+VH VSQ
Sbjct: 121 CFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Clc03G01670 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.5 bits (441), Expect = 7.2e-40
Identity = 97/149 (65.10%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MGFL V V+ ++  L IFLFH Y Y+LRL QTRTLDIEQRLHE+   +L A+ QAEIIRQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 61  QQAA--QPNAAEHEETSSATMTVAYK-DVIETSDKADCCAICIEGFEEEEICGVVESCAH 120
           +Q      +  E EETSSA M VAYK    E      CCAICIE FE+EEICGVVESC H
Sbjct: 61  RQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGH 120

Query: 121 CFHKDCIDQWLRIERRCPLCRCMVHVVSQ 147
           CFH+DC+DQWLRIE RCPLCRC+VH VSQ
Sbjct: 121 CFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Clc03G01670 vs. NCBI nr
Match: XP_022970384.1 (RING-H2 finger protein ATL64-like [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 5.2e-38
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MG +++G I ++VFL IF+F  Y  +  LYQTR LD+EQ    NHA RLFAR +AE++RQ
Sbjct: 6   MGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQ---TNHATRLFARFRAEVMRQ 65

Query: 61  QQA-----AQPNAAEHEETSSATMTVAYKDVIET--SDKADCCAICIEGFEEEEICGVVE 120
           QQ+      +PN AE EE +S    VAY+D+  T  +D  DCCAICIEGFEEEEICGVV+
Sbjct: 66  QQSIAVPPPRPNTAE-EEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVVD 125

Query: 121 SCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNS 151
            C HCFHK CID+WL I  RCPLCRC+V VVS+NNNS
Sbjct: 126 GCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of Clc03G01670 vs. NCBI nr
Match: KAG6583431.1 (RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 92/157 (58.60%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MG +++  I ++VFL IF+F  Y   L  YQTR LD+EQ    NHA RLFAR +AE +RQ
Sbjct: 10  MGVIVLSAIAIIVFLSIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEFMRQ 69

Query: 61  QQA-----AQPNAAEHEETSSATMTVAYKDV--IETSDKADCCAICIEGFEEEEICGVVE 120
           QQ+      + N AE EE +S    VAYKD+   E +D  DCCAICIEGF+EEEICGV++
Sbjct: 70  QQSIVAPPPRSNTAE-EEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEEICGVLD 129

Query: 121 SCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNS 151
            C HCFHK CIDQWL IE RCPLCRC+V VVS+NNNS
Sbjct: 130 RCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 162

[Close]

BLAST of Clc03G01670 vs. NCBI nr
Match: KAG7019192.1 (E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36
Identity = 91/157 (57.96%), Postives = 110/157 (70.06%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MG +++  I + VFL IF+F  Y   L  YQTR LD+EQ    NHA RLFAR +AE +RQ
Sbjct: 164 MGLIVLSAIAITVFLSIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEFMRQ 223

Query: 61  QQA-----AQPNAAEHEETSSATMTVAYKDV--IETSDKADCCAICIEGFEEEEICGVVE 120
           QQ+      + N AE EE +S    VAYKD+   E +D  DCCAICIEGF+EEE+CGV++
Sbjct: 224 QQSIVAPPPRSNTAE-EEAASIVTKVAYKDIKTTEEADSDDCCAICIEGFQEEELCGVLD 283

Query: 121 SCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNS 151
            C HCFHK CIDQWL IE RCPLCRC+V VVS+NNNS
Sbjct: 284 RCGHCFHKVCIDQWLGIESRCPLCRCLVRVVSENNNS 316

[Close]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-10
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 41  LHENHAARLFARLQAEIIRQQQAAQPNAAEHEETSSATMTVAYKDVIETSDKADCCAICI 100
           +H N   R    L A    +    +    +  E  S  + +  ++  E  ++ +CC IC+
Sbjct: 53  IHRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECC-ICL 112

Query: 101 EGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQN 148
            GFEE E   V+  C+HC+H +C+D+WL+ E  CPLCR  + V S +
Sbjct: 113 GGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot
Match: P87237 (Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC4G3.12c PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 31/76 (40.79%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 64  AQPNAAEHEETSSATMTVAYKDVIETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDC 123
           A+   A HE+   +    AY D    S  AD C IC+E +   +IC  +++C H FH+ C
Sbjct: 735 AKKPVASHEDVKRSGGLFAYFDDASLS-SADSCLICLETYTNGDICRKLQACKHFFHQAC 794

Query: 124 IDQWLRI-ERRCPLCR 139
           IDQWL      CPLCR
Sbjct: 795 IDQWLTTGNNSCPLCR 809

[Close]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot
Match: Q9FL42 (Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 96  CAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCR 139
           C+IC+  +E  E    +  C HCFH DC+D+WLR    CPLCR
Sbjct: 94  CSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCR 136

[Close]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.7e-07
Identity = 22/54 (40.74%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 88  ETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMV 142
           E   ++  C++C+  F++EE   ++ +C+H FH DCID WL+    CPLCR  V
Sbjct: 130 EEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot
Match: Q14B02 (E3 ubiquitin-protein ligase RNF133 OS=Mus musculus OX=10090 GN=Rnf133 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.8e-07
Identity = 22/52 (42.31%), Postives = 32/52 (61.54%), Query Frame = 0


Query: 88  ETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRC 140
           E +  AD C IC E ++  EI  ++ +C H FHK+CID W+     CP+C+C
Sbjct: 248 EVNPNADSCVICFEAYKPNEIVRIL-TCKHFFHKNCIDPWILAHGTCPMCKC 298

[Close]

BLAST of Clc03G01670 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 7.0e-41
Identity = 98/149 (65.77%), Postives = 111/149 (74.50%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MGFL V V+ ++  L IFLFH Y Y+LRL QTRTLDIEQRLHE+   +L A+ QAEIIRQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 61  QQAA--QPNAAEHEETSSATMTVAYK-DVIETSDKADCCAICIEGFEEEEICGVVESCAH 120
           +Q      +  E EETSSA MTVAYK    E      CCAICIE FE+EEICGVVESC H
Sbjct: 61  RQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGH 120

Query: 121 CFHKDCIDQWLRIERRCPLCRCMVHVVSQ 147
           CFH+DC+DQWLRIE RCPLCRC+VH VSQ
Sbjct: 121 CFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Clc03G01670 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 3.5e-40
Identity = 97/149 (65.10%), Postives = 110/149 (73.83%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MGFL V V+ ++  L IFLFH Y Y+LRL QTRTLDIEQRLHE+   +L A+ QAEIIRQ
Sbjct: 1   MGFLFVSVVCII--LIIFLFHIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEIIRQ 60

Query: 61  QQAA--QPNAAEHEETSSATMTVAYK-DVIETSDKADCCAICIEGFEEEEICGVVESCAH 120
           +Q      +  E EETSSA M VAYK    E      CCAICIE FE+EEICGVVESC H
Sbjct: 61  RQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFEDEEICGVVESCGH 120

Query: 121 CFHKDCIDQWLRIERRCPLCRCMVHVVSQ 147
           CFH+DC+DQWLRIE RCPLCRC+VH VSQ
Sbjct: 121 CFHEDCMDQWLRIESRCPLCRCLVHAVSQ 147

[Close]

BLAST of Clc03G01670 vs. ExPASy TrEMBL
Match: A0A6J1I5C3 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 2.5e-38
Identity = 93/157 (59.24%), Postives = 114/157 (72.61%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MG +++G I ++VFL IF+F  Y  +  LYQTR LD+EQ    NHA RLFAR +AE++RQ
Sbjct: 6   MGLMVLGAIAIIVFLPIFMFRCYHNRFMLYQTRALDVEQ---TNHATRLFARFRAEVMRQ 65

Query: 61  QQA-----AQPNAAEHEETSSATMTVAYKDVIET--SDKADCCAICIEGFEEEEICGVVE 120
           QQ+      +PN AE EE +S    VAY+D+  T  +D  DCCAICIEGFEEEEICGVV+
Sbjct: 66  QQSIAVPPPRPNTAE-EEAASIVTKVAYRDIKPTKEADSDDCCAICIEGFEEEEICGVVD 125

Query: 121 SCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNS 151
            C HCFHK CID+WL I  RCPLCRC+V VVS+NNNS
Sbjct: 126 GCDHCFHKVCIDKWLGIVSRCPLCRCLVRVVSENNNS 158

[Close]

BLAST of Clc03G01670 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.5e-35
Identity = 92/157 (58.60%), Postives = 111/157 (70.70%), Query Frame = 0


Query: 1   MGFLLVGVIILVVFLFIFLFHYYQYQLRLYQTRTLDIEQRLHENHAARLFARLQAEIIRQ 60
           MG +++  I ++VFL IF+F  Y   L  YQTR LD+EQ    NHA RLFAR +AE ++Q
Sbjct: 6   MGLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQ---TNHATRLFARFRAEFMQQ 65

Query: 61  QQ--AAQP---NAAEHEETSSATMTVAYKDV--IETSDKADCCAICIEGFEEEEICGVVE 120
           QQ  AA P   N AE EE +S    VAY+D+   E +D  D CAICIEGFEEEEICGV++
Sbjct: 66  QQSIAAPPPRSNTAE-EEAASIVTKVAYRDIKTTEEADVDDYCAICIEGFEEEEICGVLD 125

Query: 121 SCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQNNNS 151
            C HCFHK CIDQWLRI  RCPLCRC++ VVS+NNNS
Sbjct: 126 RCGHCFHKVCIDQWLRIGSRCPLCRCLIRVVSENNNS 158

[Close]

BLAST of Clc03G01670 vs. ExPASy TrEMBL
Match: A0A1S4E1K2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.7e-26
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 48  RLFARLQAEIIRQQQAA--QPNAAEHEETSSATMTVAYK-DVIETSDKADCCAICIEGFE 107
           +L A+ QAEIIRQ+Q      +  E EETSSA M VAYK    E      CCAICIE FE
Sbjct: 2   QLLAQTQAEIIRQRQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCCCAICIEEFE 61

Query: 108 EEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQ 147
           +EEICGVVESC HCFH+DC+DQWLRIE RCPLCRC+VH VSQ
Sbjct: 62  DEEICGVVESCGHCFHEDCMDQWLRIESRCPLCRCLVHAVSQ 103

[Close]

BLAST of Clc03G01670 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.1 bits (157), Expect = 5.7e-11
Identity = 34/107 (31.78%), Postives = 55/107 (51.40%), Query Frame = 0


Query: 41  LHENHAARLFARLQAEIIRQQQAAQPNAAEHEETSSATMTVAYKDVIETSDKADCCAICI 100
           +H N   R    L A    +    +    +  E  S  + +  ++  E  ++ +CC IC+
Sbjct: 53  IHRNCLPRDSINLHASSPDRLTRCRSGGLDPAEIRSLPVVLCRRERAEEEEEKECC-ICL 112

Query: 101 EGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMVHVVSQN 148
            GFEE E   V+  C+HC+H +C+D+WL+ E  CPLCR  + V S +
Sbjct: 113 GGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPLCRVSIRVDSSS 158

[Close]

BLAST of Clc03G01670 vs. TAIR 10
Match: AT5G53110.1 (RING/U-box superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 21/43 (48.84%), Postives = 29/43 (67.44%), Query Frame = 0


Query: 96  CAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCR 139
           CAIC+  +E +E    +  C HCFH DCID+WL++   CP+CR
Sbjct: 330 CAICLSEYEPKETLRTIPQCQHCFHADCIDEWLKLNGTCPVCR 372

[Close]

BLAST of Clc03G01670 vs. TAIR 10
Match: AT2G44581.1 (RING/U-box superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 7.0e-09
Identity = 26/65 (40.00%), Postives = 33/65 (50.77%), Query Frame = 0


Query: 84  KDVIETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMVHV 143
           K   E    +  C IC+E   E E    + +C+HCFH DCID WL  +  CPLCR  +  
Sbjct: 58  KTTAEEKHSSPYCTICLENATEGEKMRRIAACSHCFHVDCIDPWLEKKSMCPLCRAEIPP 117

Query: 144 VSQNN 149
           V   N
Sbjct: 118 VPPGN 122

[Close]

BLAST of Clc03G01670 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-09
Identity = 25/56 (44.64%), Postives = 33/56 (58.93%), Query Frame = 0


Query: 86  VIETSDKADCCAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCRCMV 142
           V+E +D    C++C+  FEEEE   ++  C H FH  CID WLR    CPLCR  +
Sbjct: 211 VVEGTD----CSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 262

[Close]

BLAST of Clc03G01670 vs. TAIR 10
Match: AT5G07040.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.2e-09
Identity = 21/43 (48.84%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 96  CAICIEGFEEEEICGVVESCAHCFHKDCIDQWLRIERRCPLCR 139
           C+IC+  +E  E    +  C HCFH DC+D+WLR    CPLCR
Sbjct: 94  CSICLCDYEAREPVRCIPECNHCFHTDCVDEWLRTSATCPLCR 136

The following BLAST results are available for this feature:

BLAST of Clc03G01670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067736.1	1.5e-40	65.77	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
TYJ97407.1	7.2e-40	65.10	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
XP_022970384.1	5.2e-38	59.24	RING-H2 finger protein ATL64-like [Cucurbita maxima]	[more]
KAG6583431.1	4.4e-37	58.60	RING-H2 finger protein ATL5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019192.1	1.3e-36	57.96	E3 ubiquitin-protein ligase ATL42, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc03G01670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRM0	8.1e-10	31.78	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]
P87237	9.9e-08	40.79	Uncharacterized RING finger protein C4G3.12c OS=Schizosaccharomyces pombe (strai...	[more]
Q9FL42	1.3e-07	48.84	Putative RING-H2 finger protein ATL69 OS=Arabidopsis thaliana OX=3702 GN=ATL69 P...	[more]
Q9LSW9	1.7e-07	40.74	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q14B02	3.8e-07	42.31	E3 ubiquitin-protein ligase RNF133 OS=Mus musculus OX=10090 GN=Rnf133 PE=1 SV=1	[more]

BLAST of Clc03G01670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VMH1	7.0e-41	65.77	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BE50	3.5e-40	65.10	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A6J1I5C3	2.5e-38	59.24	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111469386 P...	[more]
A0A6J1HJU0	1.5e-35	58.60	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]
A0A1S4E1K2	1.7e-26	65.69	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC107991538 PE=3 ...	[more]

BLAST of Clc03G01670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11110.1	5.7e-11	31.78	RING/U-box superfamily protein	[more]
AT5G53110.1	1.1e-09	48.84	RING/U-box superfamily protein	[more]
AT2G44581.1	7.0e-09	40.00	RING/U-box superfamily protein	[more]
AT4G33565.1	9.2e-09	44.64	RING/U-box superfamily protein	[more]
AT5G07040.1	9.2e-09	48.84	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 96..137 e-value: 9.0E-4 score: 28.5
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 95..138 e-value: 8.4E-11 score: 42.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 96..138 score: 12.813844
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 54..143 e-value: 5.9E-17 score: 63.1
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 8..139
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 8..139
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 80..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01670.2	Clc03G01670.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0016020	membrane