Clc03G01630 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01630
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-H2 finger protein ATL14-like
Location	ClcChr03: 1404776 .. 1405581 (-)
RNA-Seq Expression	Clc03G01630
Synteny	Clc03G01630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTCTAAACTTTTTCCAAACTTCAAAAGTATTCAAATTCCCTGTTTTACGTAAAAAGAACCTAAAAAATCAATCAAACCTTCTTCTTCAAATTCAGCCATGTCTTCCCCATCTCCTCTGCCGTTGCCGGAATCCACAAGACGGCCAAATCCGCCGCCGCCGATCCATCCCATTAGGTTTCACCTTACGACCAGATTAACAATCGCAAGCGGCTTAATGTTGGTGGCAGTGATTTGTGGTCTAATGATTTCGTTTATGTTCATTTTTCATTACTATTACCATCAACGCCTCAGAGTAGTGGAGGAGGACACCGAATCAAGGCAAGTATCGGGAGGTGTGGTGGGGGTTGGAGCGCGGCAGGAGACGGCGGAGGAAATTCCGGTGGCCGCGATGATGGGTTTCAGAGAAATAAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGTATTGAAGGATTTGGGGAGGAAGAGATTTGTGGAGTAATTGAGAATTGCGGACATCTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGAACCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGACAATCGGCCTAACACCCAATATCTTTTCTTTCTCATTCAAACTCCTTCCAGCCTTAGATTCATTCAAATTCAACTCCTTATGTATATAAGTGTGATCTACACTATAGATTTGAAACATCTAACAATAAACATATATTTATATATTTGTATAGTCGGTCACACCCTTTGCTCTATAAATTTTATAAACTCATAACTTGTATTTCTC

mRNA sequence

CTTTTCTAAACTTTTTCCAAACTTCAAAAGTATTCAAATTCCCTGTTTTACGTAAAAAGAACCTAAAAAATCAATCAAACCTTCTTCTTCAAATTCAGCCATGTCTTCCCCATCTCCTCTGCCGTTGCCGGAATCCACAAGACGGCCAAATCCGCCGCCGCCGATCCATCCCATTAGGTTTCACCTTACGACCAGATTAACAATCGCAAGCGGCTTAATGTTGGTGGCAGTGATTTGTGGTCTAATGATTTCGTTTATGTTCATTTTTCATTACTATTACCATCAACGCCTCAGAGTAGTGGAGGAGGACACCGAATCAAGGCAAGTATCGGGAGGTGTGGTGGGGGTTGGAGCGCGGCAGGAGACGGCGGAGGAAATTCCGGTGGCCGCGATGATGGGTTTCAGAGAAATAAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGTATTGAAGGATTTGGGGAGGAAGAGATTTGTGGAGTAATTGAGAATTGCGGACATCTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGAACCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGACAATCGGCCTAACACCCAATATCTTTTCTTTCTCATTCAAACTCCTTCCAGCCTTAGATTCATTCAAATTCAACTCCTTATGTATATAAGTGTGATCTACACTATAGATTTGAAACATCTAACAATAAACATATATTTATATATTTGTATAGTCGGTCACACCCTTTGCTCTATAAATTTTATAAACTCATAACTTGTATTTCTC

Coding sequence (CDS)

ATGTCTTCCCCATCTCCTCTGCCGTTGCCGGAATCCACAAGACGGCCAAATCCGCCGCCGCCGATCCATCCCATTAGGTTTCACCTTACGACCAGATTAACAATCGCAAGCGGCTTAATGTTGGTGGCAGTGATTTGTGGTCTAATGATTTCGTTTATGTTCATTTTTCATTACTATTACCATCAACGCCTCAGAGTAGTGGAGGAGGACACCGAATCAAGGCAAGTATCGGGAGGTGTGGTGGGGGTTGGAGCGCGGCAGGAGACGGCGGAGGAAATTCCGGTGGCCGCGATGATGGGTTTCAGAGAAATAAAAACAGAGGAAATTGGGGATTGTGATGGGAGGAGGTGTGCGATATGTATTGAAGGATTTGGGGAGGAAGAGATTTGTGGAGTAATTGAGAATTGCGGACATCTTTTTCATAAGGATTGTATTAATCGGTGGCTTAGAATTGAGAACCGTTGCCCACTTTGCCGCTGCTTTGTTCATAGGTTTTTGTGA

Protein sequence

MSSPSPLPLPESTRRPNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVVEEDTESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFVHRFL

Homology

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BLAST of Clc03G01630 vs. NCBI nr
Match: XP_031742489.1 (RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical protein Csa_019970 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.9e-63
Identity = 128/163 (78.53%), Postives = 135/163 (82.82%), Query Frame = 0


Query: 1   MSSPSPLPLPESTRRPN-PPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYY 60
           MSSPSP P+PEST RP  PP PIH  +FHLTTRLTIASGLMLVAVIC LMI FMFIFHY 
Sbjct: 1   MSSPSPPPVPESTTRPPIPPLPIHHSKFHLTTRLTIASGLMLVAVICALMILFMFIFHYC 60

Query: 61  YHQRLRVVEEDTESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCAI 120
           YHQRL VV  D ES QVSG      A +ET+EEIP +  MGFREIKT EIGDCDGR+CAI
Sbjct: 61  YHQRLLVVHGDIESSQVSG-----TAAEETSEEIPASVKMGFREIKTGEIGDCDGRKCAI 120

Query: 121 CIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           CIEGFGEEEICGVIENCGH FH+DCINRWLRIE RCPLCRCFV
Sbjct: 121 CIEGFGEEEICGVIENCGHFFHRDCINRWLRIERRCPLCRCFV 158

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BLAST of Clc03G01630 vs. NCBI nr
Match: XP_022158253.1 (RING-H2 finger protein ATL14-like [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 2.8e-34
Identity = 87/151 (57.62%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 16  PNPPP----PIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVVEEDT 75
           P+PPP     IH   FHLT RL +ASG M VAV+C   IS MF+FHYY   + RV   DT
Sbjct: 5   PSPPPQTTAAIHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYY---KTRV--HDT 64

Query: 76  ESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICG 135
           ESR          ++ +TAE+IP +A + +R    EEI DC G RCAICIEGF EEE CG
Sbjct: 65  ESR----------SQPQTAEQIPASA-VAYR----EEIRDCGG-RCAICIEGFAEEEKCG 124

Query: 136 VIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           VIENCGH FHKDCI+RWL+IE+RCPLCRC +
Sbjct: 125 VIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

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BLAST of Clc03G01630 vs. NCBI nr
Match: XP_022158249.1 (E3 ubiquitin-protein ligase RING1-like [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-18
Identity = 66/166 (39.76%), Postives = 90/166 (54.22%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIAS--------GLMLVAVICGLMISFMFIFHYYYHQRLRV- 75
           P  PPP   +++ L   + I          G   V  IC  +I   FI  Y YH+R+ + 
Sbjct: 4   PPTPPPSFSVQYSLPVTVVITHRSTFDPKIGFGFVGFICFSLIVLFFIL-YSYHRRIMLS 63

Query: 76  ---VEEDTESR----QVSGGVVGVGARQETA---EEIPVAAMMGFREIKTEEIGDCDGRR 135
              V +D ESR    +V   V+   ARQ+ +   + +  A+      I+ EEI D D R 
Sbjct: 64  QTRVYDDIESRVQVSRVFTIVLSERARQQPSPPPQTVEEASATAVAIIEAEEIIDSD-RD 123

Query: 136 CAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           CAIC EGF E+++C VIE CGH FHKDC+++WL +E  CPLCRCFV
Sbjct: 124 CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRCFV 167

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BLAST of Clc03G01630 vs. NCBI nr
Match: KAA0067736.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 8.3e-18
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 38  GLMLVAVICGLMISFMFIFHYYYHQRLRVVEE---DTESR-----------QVSGGVVGV 97
           G + V+V+C ++I F+F   + YH RLR+ +    D E R           Q    +  +
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEI--I 61

Query: 98  GARQET--------AEEIPVAAMMGFREIKTEEIGD---CDGRRCAICIEGFGEEEICGV 157
             RQ T         EE   A M    ++K  E G    C    CAICIE F +EEICGV
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCC----CAICIEEFEDEEICGV 121

Query: 158 IENCGHLFHKDCINRWLRIENRCPLCRCFVH 164
           +E+CGH FH+DC+++WLRIE+RCPLCRC VH
Sbjct: 122 VESCGHCFHEDCMDQWLRIESRCPLCRCLVH 143

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BLAST of Clc03G01630 vs. NCBI nr
Match: TYJ97407.1 (RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 8.3e-18
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 38  GLMLVAVICGLMISFMFIFHYYYHQRLRVVEE---DTESR-----------QVSGGVVGV 97
           G + V+V+C ++I F+F   + YH RLR+ +    D E R           Q    +  +
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEI--I 61

Query: 98  GARQET--------AEEIPVAAMMGFREIKTEEIGD---CDGRRCAICIEGFGEEEICGV 157
             RQ T         EE   A M    ++K  E G    C    CAICIE F +EEICGV
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCC----CAICIEEFEDEEICGV 121

Query: 158 IENCGHLFHKDCINRWLRIENRCPLCRCFVH 164
           +E+CGH FH+DC+++WLRIE+RCPLCRC VH
Sbjct: 122 VESCGHCFHEDCMDQWLRIESRCPLCRCLVH 143

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BLAST of Clc03G01630 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 2.5e-09
Identity = 44/161 (27.33%), Postives = 68/161 (42.24%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVV-------- 75
           P PPPP   +   L T + +   ++L      L + F    H    +R+           
Sbjct: 29  PPPPPPPRELSLLLPTSICVVGSIILF-----LFLVFFLYLHITQQRRISAASVTPGDTN 88

Query: 76  ----EEDTESRQVSG-----GVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCA 135
               E++TE R  S       +  VG  +     I V   +GF++ +    G  DG  C+
Sbjct: 89  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITV---VGFKKGE----GIIDGTECS 148

Query: 136 ICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCR 160
           +C+  F E+E   ++  C H FH +CI+ WL     CPLCR
Sbjct: 149 VCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR 177

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BLAST of Clc03G01630 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-09
Identity = 50/176 (28.41%), Postives = 79/176 (44.89%), Query Frame = 0


Query: 8   PLPESTRRPNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYY------- 67
           PL + +  P PPPPI    FH  +    +  ++ VAVI  L  +F+ + +Y +       
Sbjct: 9   PLRDLSFPPPPPPPI----FHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLN 68

Query: 68  HQRLRVVEEDTESRQVSGG-----VVGVGARQETAEEIPVAAMMGFREIKT--------- 127
             R+ ++   + SR+         V     R    +E  + A+  F+  K          
Sbjct: 69  WHRIDILGRFSLSRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFT 128

Query: 128 ---EEIGDCDGRRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCR 160
              EE  +   + C++C+  F +EE   +I NC HLFH DCI+ WL+    CPLCR
Sbjct: 129 GEGEEEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCR 180

[Close]

BLAST of Clc03G01630 vs. ExPASy Swiss-Prot
Match: P93823 (RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 7.3e-09
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIASG----LMLVAVICGLMISFMFIFHYYY--------HQ- 75
           P PPPP       +  R T +SG    ++ +AVI  L  +F+ + +Y +        HQ 
Sbjct: 17  PPPPPPSTTFTSPIFPR-TSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 76

Query: 76  ----RLRVVEEDTESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCA 135
               R R   +       S   V  G  +     IPV        +  EE    + + C+
Sbjct: 77  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 136

Query: 136 ICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           +C+  F E+E   +I NC H+FH DCI+ WL+    CPLCR  V
Sbjct: 137 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

[Close]

BLAST of Clc03G01630 vs. ExPASy Swiss-Prot
Match: Q8LGA5 (E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 SV=2)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 48/158 (30.38%), Postives = 70/158 (44.30%), Query Frame = 0


Query: 7   LPLPESTRRPNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRV 66
           L L  S  +P  P   H   +  +  L+ A  +++V VI  L   FM  F  Y       
Sbjct: 16  LLLSVSAGQPGTPDQRHD-PYAYSGSLSPAMAVVVVVVIAALF--FMGFFTVYIRHCTGA 75

Query: 67  VEEDT-----ESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCAICI 126
           V+          R+V+   V  G   ET E  P      + E+KT++IG      CAIC+
Sbjct: 76  VDGSVTPAGGARRRVTNATVARGLDAETIETFPTFV---YSEVKTQKIGK-GALECAICL 135

Query: 127 EGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCR 160
             F ++E   ++  C H+FH  CI  WL+    CP+CR
Sbjct: 136 NEFEDDETLRLLPKCDHVFHPHCIGAWLQGHVTCPVCR 166

[Close]

BLAST of Clc03G01630 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.1e-08
Identity = 48/168 (28.57%), Postives = 70/168 (41.67%), Query Frame = 0


Query: 9   LPESTRRPNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVVE 68
           + ES+   +P P   P      T   IA+   ++ V   L ++F+ +  Y   +R  V  
Sbjct: 12  MDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTT 71

Query: 69  EDTES-------RQVSG----GVVGVGARQETAEEIPV---AAMMGFREIKTEEIGDCDG 128
             T         R+ SG    G  G G   E    +PV   +        K EE  D DG
Sbjct: 72  TSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDG 131

Query: 129 RRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
             CA+C+    + E    +  CGH FH +C++ WL   + CPLCR  V
Sbjct: 132 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 179

[Close]

BLAST of Clc03G01630 vs. ExPASy TrEMBL
Match: A0A6J1DVK4 (RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-34
Identity = 87/151 (57.62%), Postives = 103/151 (68.21%), Query Frame = 0


Query: 16  PNPPP----PIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVVEEDT 75
           P+PPP     IH   FHLT RL +ASG M VAV+C   IS MF+FHYY   + RV   DT
Sbjct: 5   PSPPPQTTAAIHRNTFHLTRRLWVASGFMFVAVVCAFSISLMFVFHYY---KTRV--HDT 64

Query: 76  ESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICG 135
           ESR          ++ +TAE+IP +A + +R    EEI DC G RCAICIEGF EEE CG
Sbjct: 65  ESR----------SQPQTAEQIPASA-VAYR----EEIRDCGG-RCAICIEGFAEEEKCG 124

Query: 136 VIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           VIENCGH FHKDCI+RWL+IE+RCPLCRC +
Sbjct: 125 VIENCGHFFHKDCIDRWLKIESRCPLCRCSI 134

[Close]

BLAST of Clc03G01630 vs. ExPASy TrEMBL
Match: A0A6J1DYV0 (E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC111024783 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 8.1e-19
Identity = 66/166 (39.76%), Postives = 90/166 (54.22%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIAS--------GLMLVAVICGLMISFMFIFHYYYHQRLRV- 75
           P  PPP   +++ L   + I          G   V  IC  +I   FI  Y YH+R+ + 
Sbjct: 4   PPTPPPSFSVQYSLPVTVVITHRSTFDPKIGFGFVGFICFSLIVLFFIL-YSYHRRIMLS 63

Query: 76  ---VEEDTESR----QVSGGVVGVGARQETA---EEIPVAAMMGFREIKTEEIGDCDGRR 135
              V +D ESR    +V   V+   ARQ+ +   + +  A+      I+ EEI D D R 
Sbjct: 64  QTRVYDDIESRVQVSRVFTIVLSERARQQPSPPPQTVEEASATAVAIIEAEEIIDSD-RD 123

Query: 136 CAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           CAIC EGF E+++C VIE CGH FHKDC+++WL +E  CPLCRCFV
Sbjct: 124 CAICFEGFEEKQVCRVIEKCGHFFHKDCVDQWLTMERGCPLCRCFV 167

[Close]

BLAST of Clc03G01630 vs. ExPASy TrEMBL
Match: A0A5D3BE50 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002270 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-18
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 38  GLMLVAVICGLMISFMFIFHYYYHQRLRVVEE---DTESR-----------QVSGGVVGV 97
           G + V+V+C ++I F+F   + YH RLR+ +    D E R           Q    +  +
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEI--I 61

Query: 98  GARQET--------AEEIPVAAMMGFREIKTEEIGD---CDGRRCAICIEGFGEEEICGV 157
             RQ T         EE   A M    ++K  E G    C    CAICIE F +EEICGV
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMKVAYKVKDNEAGGSYCC----CAICIEEFEDEEICGV 121

Query: 158 IENCGHLFHKDCINRWLRIENRCPLCRCFVH 164
           +E+CGH FH+DC+++WLRIE+RCPLCRC VH
Sbjct: 122 VESCGHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Clc03G01630 vs. ExPASy TrEMBL
Match: A0A5A7VMH1 (RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00560 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 4.0e-18
Identity = 62/151 (41.06%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 38  GLMLVAVICGLMISFMFIFHYYYHQRLRVVEE---DTESR-----------QVSGGVVGV 97
           G + V+V+C ++I F+F   + YH RLR+ +    D E R           Q    +  +
Sbjct: 2   GFLFVSVVCIILIIFLF---HIYHYRLRLNQTRTLDIEQRLHEHRTMQLLAQTQAEI--I 61

Query: 98  GARQET--------AEEIPVAAMMGFREIKTEEIGD---CDGRRCAICIEGFGEEEICGV 157
             RQ T         EE   A M    ++K  E G    C    CAICIE F +EEICGV
Sbjct: 62  RQRQTTTQSNDTTEGEETSSAVMTVAYKVKDNEAGGSYCC----CAICIEEFEDEEICGV 121

Query: 158 IENCGHLFHKDCINRWLRIENRCPLCRCFVH 164
           +E+CGH FH+DC+++WLRIE+RCPLCRC VH
Sbjct: 122 VESCGHCFHEDCMDQWLRIESRCPLCRCLVH 143

[Close]

BLAST of Clc03G01630 vs. ExPASy TrEMBL
Match: A0A6J1HJU0 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.2e-17
Identity = 58/144 (40.28%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 38  GLMLVAVICGLMISFMFIFHYY------YHQRLRVVEED-----------TESRQVSGGV 97
           GL++++ I  ++   +F+F  Y      Y  R   VE+             E  Q    +
Sbjct: 7   GLIVLSAIAIIVFLPIFMFRCYHNHLMQYQTRALDVEQTNHATRLFARFRAEFMQQQQSI 66

Query: 98  VGVGARQETAEE--IPVAAMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGH 157
                R  TAEE    +   + +R+IKT E  D D   CAICIEGF EEEICGV++ CGH
Sbjct: 67  AAPPPRSNTAEEEAASIVTKVAYRDIKTTEEADVDD-YCAICIEGFEEEEICGVLDRCGH 126

Query: 158 LFHKDCINRWLRIENRCPLCRCFV 163
            FHK CI++WLRI +RCPLCRC +
Sbjct: 127 CFHKVCIDQWLRIGSRCPLCRCLI 149

[Close]

BLAST of Clc03G01630 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-10
Identity = 44/161 (27.33%), Postives = 68/161 (42.24%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIASGLMLVAVICGLMISFMFIFHYYYHQRLRVV-------- 75
           P PPPP   +   L T + +   ++L      L + F    H    +R+           
Sbjct: 29  PPPPPPPRELSLLLPTSICVVGSIILF-----LFLVFFLYLHITQQRRISAASVTPGDTN 88

Query: 76  ----EEDTESRQVSG-----GVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCA 135
               E++TE R  S       +  VG  +     I V   +GF++ +    G  DG  C+
Sbjct: 89  QQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITV---VGFKKGE----GIIDGTECS 148

Query: 136 ICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCR 160
           +C+  F E+E   ++  C H FH +CI+ WL     CPLCR
Sbjct: 149 VCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCR 177

[Close]

BLAST of Clc03G01630 vs. TAIR 10
Match: AT2G37150.1 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 97  AMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCP 156
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++N CP
Sbjct: 477 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 534

Query: 157 LCR 160
           +C+
Sbjct: 537 ICK 534

[Close]

BLAST of Clc03G01630 vs. TAIR 10
Match: AT2G37150.2 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 97  AMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCP 156
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++N CP
Sbjct: 477 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 534

Query: 157 LCR 160
           +C+
Sbjct: 537 ICK 534

[Close]

BLAST of Clc03G01630 vs. TAIR 10
Match: AT2G37150.3 (RING/U-box superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-10
Identity = 26/63 (41.27%), Postives = 40/63 (63.49%), Query Frame = 0


Query: 97  AMMGFREIKTEEIGDCDGRRCAICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCP 156
           A M +   +TEE      R+CAIC+E + E+E  G ++ CGH +H  CI +WL ++N CP
Sbjct: 530 ATMYYPSYQTEE-----QRKCAICLEEYKEKEELGEVKGCGHDYHGRCIKKWLSMKNSCP 587

Query: 157 LCR 160
           +C+
Sbjct: 590 ICK 587

[Close]

BLAST of Clc03G01630 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.0 bits (149), Expect = 5.2e-10
Identity = 49/164 (29.88%), Postives = 72/164 (43.90%), Query Frame = 0


Query: 16  PNPPPPIHPIRFHLTTRLTIASG----LMLVAVICGLMISFMFIFHYYY--------HQ- 75
           P PPPP       +  R T +SG    ++ +AVI  L  +F+ + +Y +        HQ 
Sbjct: 17  PPPPPPSTTFTSPIFPR-TSSSGTNFPILAIAVIGILATAFLLVSYYIFVIKCCLNWHQI 76

Query: 76  ----RLRVVEEDTESRQVSGGVVGVGARQETAEEIPVAAMMGFREIKTEEIGDCDGRRCA 135
               R R   +       S   V  G  +     IPV        +  EE    + + C+
Sbjct: 77  DIFRRRRRSSDQNPLMIYSPHEVNRGLDESAIRAIPVFKFKKRDVVAGEEDQSKNSQECS 136

Query: 136 ICIEGFGEEEICGVIENCGHLFHKDCINRWLRIENRCPLCRCFV 163
           +C+  F E+E   +I NC H+FH DCI+ WL+    CPLCR  V
Sbjct: 137 VCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSV 179

The following BLAST results are available for this feature:

BLAST of Clc03G01630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742489.1	2.9e-63	78.53	RING-H2 finger protein ATL1-like [Cucumis sativus] >KAE8653253.1 hypothetical pr...	[more]
XP_022158253.1	2.8e-34	57.62	RING-H2 finger protein ATL14-like [Momordica charantia]	[more]
XP_022158249.1	1.7e-18	39.76	E3 ubiquitin-protein ligase RING1-like [Momordica charantia]	[more]
KAA0067736.1	8.3e-18	41.06	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]
TYJ97407.1	8.3e-18	41.06	RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa]	[more]

BLAST of Clc03G01630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LX93	2.5e-09	27.33	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q9LSW9	7.3e-09	28.41	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
P93823	7.3e-09	29.88	RING-H2 finger protein ATL1 OS=Arabidopsis thaliana OX=3702 GN=ATL1 PE=2 SV=1	[more]
Q8LGA5	1.2e-08	30.38	E3 ubiquitin-protein ligase ATL31 OS=Arabidopsis thaliana OX=3702 GN=ATL31 PE=1 ...	[more]
Q9LRB7	2.1e-08	28.57	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]

BLAST of Clc03G01630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVK4	1.4e-34	57.62	RING-H2 finger protein ATL14-like OS=Momordica charantia OX=3673 GN=LOC111024788...	[more]
A0A6J1DYV0	8.1e-19	39.76	E3 ubiquitin-protein ligase RING1-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3BE50	4.0e-18	41.06	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7VMH1	4.0e-18	41.06	RING-H2 finger protein ATL52-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A6J1HJU0	1.2e-17	40.28	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111464742...	[more]

BLAST of Clc03G01630 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10380.1	1.8e-10	27.33	RING/U-box superfamily protein	[more]
AT2G37150.1	2.3e-10	41.27	RING/U-box superfamily protein	[more]
AT2G37150.2	2.3e-10	41.27	RING/U-box superfamily protein	[more]
AT2G37150.3	2.3e-10	41.27	RING/U-box superfamily protein	[more]
AT1G04360.1	5.2e-10	29.88	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 117..158 e-value: 2.0E-6 score: 37.3
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 116..159 e-value: 8.2E-13 score: 48.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 117..159 score: 13.256433
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 82..163 e-value: 2.4E-16 score: 61.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 28..160
None	No IPR available	PANTHER	PTHR14155:SF550	RING-H2 FINGER PROTEIN ATL40	coord: 28..160
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 101..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01630.1	Clc03G01630.1	mRNA