Clc03G01070 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01070
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	serine/arginine-rich splicing factor SR45a-like
Location	ClcChr03: 946652 .. 947660 (+)
RNA-Seq Expression	Clc03G01070
Synteny	Clc03G01070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTCAGAACACTGGGGTTGTATGCCCTGCATTTCTCTCTATTTCTGCCAATTGGATTATATGTTATTTAAGTATTTTAGCTTTTTTCTTTTTCCTTCTAATTTTGACTCTAGACACCATCACTTGCACCCCTGCTGGTACTTCTCTTAGATGGACGATTGTGAGTCGTCGTCTCATTTTTCTATCTTTAATTGTTTGATAGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGGTGAGGTTTTAATCTTATGTTTGGCTTATTGCTGTGAAGTATCTTGATATCTCTGTCTAATCTTCATCATTCTAACAGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTACTCTTATAGTCGACGTAGATATGATTCTCCCAGACTACAGGCATTATAAGTCATATTCTCGATCCCGCTCACCGTATCATAGGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

mRNA sequence

ATGAAGTCTCAGAACACTGGGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Coding sequence (CDS)

ATGAAGTCTCAGAACACTGGGGCTCGAAGGCGGAGAGGTAGAACTCCAACTCCTGGGAGGTATCTTGGACTTAGAACAGTTCATGTGAGGCGTAGGTCGCGTAGCTACTCTTCTCGGCGTTCTCCCAGCTACTCTCCATATAGGAGAAGCTTTAGCCGCTCTACTCATTATTCATCTGACCGTAGCAGGAGTAGGTCCCATTCCCTTGACCGACGCCGTAGATCATACGGTTCCCCTTATCAGTATAGATCGTGTGGTCGTGATAAGTCATACTCACCTTATGACAGTTATTCCCCTTATCCTTACTATAGAAGGCACAGTTATCGGTCAGTTTCTCGGAGCCTGTCACCAGAGGCAAGGATTTCTCATAGACATTATTCCAGGAGTTATTCTCCTGGGCCTAGGAGAAGAACATTGAGGAGTTACTCTCGCAGCCCCTCCCTGGAATCGAGGAGAAGTTATTCACGTAGTATTTCCCCTAAACGAAGCAGGAGATCATGGAGCAGCTATTCATACAGCATTTCTCCTGAAAGAAGCAGGAGCTCAAGGAGTCGCTCTCCCAGCAATACCCCGAGACAGCATAGCTACAAGAGAGGGTATTCTGGTAGGAGTCGATCGAGAAGTGGAAGTGTGAGTTCAAGGTCCGTTAGCGCTGCTTGA

Protein sequence

MKSQNTGARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSHSLDRRRRSYGSPYQYRSCGRDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRSVSAA

Homology

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BLAST of Clc03G01070 vs. NCBI nr
Match: XP_038894517.1 (serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida])

HSP 1 Score: 282.0 bits (720), Expect = 4.5e-72
Identity = 182/242 (75.21%), Postives = 190/242 (78.51%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRST YSS+RSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTDYSSNRSRSRSH 177

Query: 68  SLDRRRRSYGSPYQYRSCG----------------------------RDKSYSPYDSYSP 127
           S+DR RRSYGS Y YRS                              RD+SYSPYD YSP
Sbjct: 178 SVDRHRRSYGSSYNYRSYSYSRRRYDSPDCRRHKSYSRSRSPYRRRHRDRSYSPYDDYSP 237

Query: 128 YPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTL-RSYSRSPSLESRRSYSRSI 187
            PYYRRH YRSVSRSLSP+ARIS RHYSRSYSP PRRRTL RSYSRS S ESRRSYSRSI
Sbjct: 238 DPYYRRHRYRSVSRSLSPKARISSRHYSRSYSPEPRRRTLRRSYSRSLSWESRRSYSRSI 297

Query: 188 SPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYS-GRSRSRSGSVSSRSVS 220
           SP+RSRRSWSSYSYS+SPERSRSSRSRS SNT R+HSYK   S  RSRSRS SV+SRSVS
Sbjct: 298 SPERSRRSWSSYSYSVSPERSRSSRSRSRSNTSRRHSYKLYESRRRSRSRSRSVTSRSVS 357

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BLAST of Clc03G01070 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 265.0 bits (676), Expect = 5.7e-67
Identity = 176/253 (69.57%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRSTHYSSDRSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 177

Query: 68  SLDRRRRSYGSPYQ--------------------------------------YRSCGRDK 127
           S++R RRSYGSPY                                       YR   RD+
Sbjct: 178 SINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDR 237

Query: 128 SYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLE 187
           SYSPYD YSP PYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR+YS SPS E
Sbjct: 238 SYSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRE 297

Query: 188 SRRSYSRSISPKRSRRSWSS-YSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRS 220
           SRRSYSRSISP+RSRRS SS YS SISPER RS RSRS S+TPR+H  + KRGYS RSRS
Sbjct: 298 SRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRS 357

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BLAST of Clc03G01070 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-60
Identity = 167/252 (66.27%), Postives = 180/252 (71.43%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRS SRSTH SSDRSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSR 177

Query: 68  SLDRRRRSYGSPYQ--------------------------------------YRSCGRDK 127
           S+D+ RR+YGSPY                                       YR   RD+
Sbjct: 178 SIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDR 237

Query: 128 SYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLE 187
           SYSP D YSP PYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR++ RSPS E
Sbjct: 238 SYSPCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHYRSPSQE 297

Query: 188 SRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSR 220
              SYSRSISP+RSR   S YS SISPER RSSRSRS S+TPR+H  + KRGYS RSRSR
Sbjct: 298 -LSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSR 357

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BLAST of Clc03G01070 vs. NCBI nr
Match: KAG6607292.1 (Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 212.2 bits (539), Expect = 4.4e-51
Identity = 155/244 (63.52%), Postives = 170/244 (69.67%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRSH
Sbjct: 150 ARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 209

Query: 68  SLDRRRRSYGSPYQYRS--------------------------CGR------DKSYSPYD 127
           S +RRRRS  SPY YRS                          C R      D+SYSPYD
Sbjct: 210 SPNRRRRSNDSPYHYRSYSPYSGRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYD 269

Query: 128 SYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYS 187
             SP PYYRRH  RSVSRS+SP+AR+S R YSRSYSP  RR   RSYSRS      RSYS
Sbjct: 270 YCSPDPYYRRHRDRSVSRSVSPKARVSSRRYSRSYSPRHRRSASRSYSRS------RSYS 329

Query: 188 RSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRS 220
           RS+SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRS
Sbjct: 330 RSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRS 380

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BLAST of Clc03G01070 vs. NCBI nr
Match: XP_023525006.1 (serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 7.8e-48
Identity = 152/244 (62.30%), Postives = 166/244 (68.03%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRRSRSYSSRRSPSYSPY RS S S++YSSDRSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVRVRRRSRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SLDRRRRSYGSPYQYRS--------------------------CG------RDKSYSPYD 127
           S DRRRRS  SPY+YRS                          C       RD+SYSPYD
Sbjct: 178 SPDRRRRSNDSPYRYRSYSPYSHRRYDSPYYRHHRSYSRSHSPCSRSPTRRRDRSYSPYD 237

Query: 128 SYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYS 187
             SP PYYRRH   S+SRS+SP+AR+S R YSRSYSP   R   RSYSRS      RSYS
Sbjct: 238 YCSPDPYYRRHRDGSISRSVSPKARVSSRRYSRSYSPRHCRSASRSYSRS------RSYS 297

Query: 188 RSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRS 220
           RSISP+RSRRS   +S+SI+PER RSSRSRS S+TP  H  + GYSG     SGSV SRS
Sbjct: 298 RSISPERSRRS-GRHSHSIAPER-RSSRSRSCSSTPGCHK-RGGYSG----GSGSVVSRS 348

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BLAST of Clc03G01070 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.9e-15
Identity = 104/227 (45.81%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S      SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSR-----SRSRSYSSDRGRSYSP 210

Query: 68  SLDRRRRSYGSPYQYRSCGRDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYS 127
           S  RR             GR  SYS        P+YRR  + S SRS SP+ R + R   
Sbjct: 211 SYGRR-------------GRSSSYS--------PFYRRRRFYSPSRSPSPDDRYNRRR-D 270

Query: 128 RSYSPGPRRR-TLRSYSRSPSLESR--------RSYSRSISPKRSRRSWSSYSYSISPER 187
           RSYSP  RRR   RSYSR+     R        RS SRS SP+   R       S SP  
Sbjct: 271 RSYSPYYRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRAR-----DRSCSPYY 330

Query: 188 SRSSRSRSPSNTPRQHSY--KRGYSGRSRSRSGSVS------SRSVS 218
               RS SP    R  SY  +  Y  R RS SGSVS      SRS+S
Sbjct: 331 RGRDRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSIS 345

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BLAST of Clc03G01070 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.8e-67
Identity = 176/253 (69.57%), Postives = 188/253 (74.31%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRS SRSTHYSSDRSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSSSRSTHYSSDRSRSRSR 177

Query: 68  SLDRRRRSYGSPYQ--------------------------------------YRSCGRDK 127
           S++R RRSYGSPY                                       YR   RD+
Sbjct: 178 SINRHRRSYGSPYHRRSYSYSRRRYDSPYYRRRYDSPDYYRHHRSYSRSSSPYRRWSRDR 237

Query: 128 SYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLE 187
           SYSPYD YSP PYYRRH YRSVSRSLSP++R + RHYSRSYSP PRRRTLR+YS SPS E
Sbjct: 238 SYSPYDYYSPDPYYRRHRYRSVSRSLSPKSR-NGRHYSRSYSPEPRRRTLRNYSHSPSRE 297

Query: 188 SRRSYSRSISPKRSRRSWSS-YSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRS 220
           SRRSYSRSISP+RSRRS SS YS SISPER RS RSRS S+TPR+H  + KRGYS RSRS
Sbjct: 298 SRRSYSRSISPERSRRSGSSVYSSSISPERGRSLRSRSCSHTPRRHESTRKRGYSSRSRS 357

[Close]

BLAST of Clc03G01070 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 6.6e-61
Identity = 167/252 (66.27%), Postives = 180/252 (71.43%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRYLGLRTVH RRRSRSYSSRRSPSYSPYRRS SRSTH SSDRSRSRS 
Sbjct: 118 ARRRRGRTPTPGRYLGLRTVHGRRRSRSYSSRRSPSYSPYRRSSSRSTHCSSDRSRSRSR 177

Query: 68  SLDRRRRSYGSPYQ--------------------------------------YRSCGRDK 127
           S+D+ RR+YGSPY                                       YR   RD+
Sbjct: 178 SIDQHRRAYGSPYHRRSYSYSRRRYDSPDYRRRYDSPDYYRHHKSYSRSRSPYRRWSRDR 237

Query: 128 SYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLE 187
           SYSP D YSP PYYRRH YRSVSRSLSP++R S RHYSRSYSP PRRRTLR++ RSPS E
Sbjct: 238 SYSPCDHYSPDPYYRRHRYRSVSRSLSPKSRNS-RHYSRSYSPEPRRRTLRNHYRSPSQE 297

Query: 188 SRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQH--SYKRGYSGRSRSR 220
              SYSRSISP+RSR   S YS SISPER RSSRSRS S+TPR+H  + KRGYS RSRSR
Sbjct: 298 -LSSYSRSISPERSRSGSSIYSSSISPERGRSSRSRSCSHTPRRHESTRKRGYSSRSRSR 357

[Close]

BLAST of Clc03G01070 vs. ExPASy TrEMBL
Match: A0A6J1GBJ2 (serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 151/244 (61.89%), Postives = 168/244 (68.85%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SLDRRRRSYGSPYQYRS--------------------------CG------RDKSYSPYD 127
           S +RRRRS  SPY+YRS                          C       RD+SYSPYD
Sbjct: 178 SPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSPYD 237

Query: 128 SYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYS 187
             SP  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR   RS+SRS      RSYS
Sbjct: 238 YCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYS 297

Query: 188 RSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRS 220
           RS+SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRS
Sbjct: 298 RSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRS 348

[Close]

BLAST of Clc03G01070 vs. ExPASy TrEMBL
Match: A0A6J1GAS3 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 151/244 (61.89%), Postives = 168/244 (68.85%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SLDRRRRSYGSPYQYRS--------------------------CGR------DKSYSPYD 127
           S +RRRRS  SPY+YRS                          C R      D+SYSPYD
Sbjct: 178 SPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRLPTRRHDRSYSPYD 237

Query: 128 SYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRRRTLRSYSRSPSLESRRSYS 187
             SP  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR   RS+SRS      RSYS
Sbjct: 238 YCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRRSASRSHSRS------RSYS 297

Query: 188 RSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSYKRGYSGRSRSRSGSVSSRS 220
           RS+SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  + GYSG     SGSV+SRS
Sbjct: 298 RSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK-RGGYSG----GSGSVASRS 348

[Close]

BLAST of Clc03G01070 vs. ExPASy TrEMBL
Match: A0A6J1GBG9 (serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111452466 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 151/263 (57.41%), Postives = 168/263 (63.88%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPGRY GLRTV VRRR RSYSSRRSPSYSPY RS S S++YSSDRSRSRSH
Sbjct: 118 ARRRRGRTPTPGRYFGLRTVCVRRRLRSYSSRRSPSYSPYSRSLSCSSNYSSDRSRSRSH 177

Query: 68  SLDRRRRSYGSPYQYRS------------------------------------------- 127
           S +RRRRS  SPY+YRS                                           
Sbjct: 178 SPNRRRRSNDSPYRYRSYSPYSRRRYDSPYYRRHRSYSRSHSPCSRSPTRRRDRSYSRSH 237

Query: 128 --CG------RDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYSRSYSPGPRR 187
             C       RD+SYSPYD  SP  YYRRH  RSVSRS+SP+AR+S R YS SYSP  RR
Sbjct: 238 SPCSRSPTRRRDRSYSPYDYCSPDLYYRRHRDRSVSRSVSPKARVSSRRYSCSYSPRHRR 297

Query: 188 RTLRSYSRSPSLESRRSYSRSISPKRSRRSWSSYSYSISPERSRSSRSRSPSNTPRQHSY 220
              RS+SRS      RSYSRS+SP+RSRR + S+S+SISPER RSSRSRS S+TPR H  
Sbjct: 298 SASRSHSRS------RSYSRSLSPERSRR-FRSHSHSISPER-RSSRSRSRSHTPRHHK- 357

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BLAST of Clc03G01070 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.9e-16
Identity = 104/227 (45.81%), Postives = 114/227 (50.22%), Query Frame = 0


Query: 8   ARRRRGRTPTPGRYLGLRTVHVRRRSRSYSSRRSPSYSPYRRSFSRSTHYSSDRSRSRSH 67
           ARRRRGRTPTPG+YLGLRT   R +S SYS RRS S S      SRS  YSSDR RS S 
Sbjct: 151 ARRRRGRTPTPGKYLGLRTARGRHKSPSYSPRRSVSCSR-----SRSRSYSSDRGRSYSP 210

Query: 68  SLDRRRRSYGSPYQYRSCGRDKSYSPYDSYSPYPYYRRHSYRSVSRSLSPEARISHRHYS 127
           S  RR             GR  SYS        P+YRR  + S SRS SP+ R + R   
Sbjct: 211 SYGRR-------------GRSSSYS--------PFYRRRRFYSPSRSPSPDDRYNRRR-D 270

Query: 128 RSYSPGPRRR-TLRSYSRSPSLESR--------RSYSRSISPKRSRRSWSSYSYSISPER 187
           RSYSP  RRR   RSYSR+     R        RS SRS SP+   R       S SP  
Sbjct: 271 RSYSPYYRRRDRSRSYSRNCRARDRSPYYMRRYRSRSRSYSPRYRAR-----DRSCSPYY 330

Query: 188 SRSSRSRSPSNTPRQHSY--KRGYSGRSRSRSGSVS------SRSVS 218
               RS SP    R  SY  +  Y  R RS SGSVS      SRS+S
Sbjct: 331 RGRDRSYSPHYQGRDRSYSPESRYYRRHRSVSGSVSPGGRSMSRSIS 345

The following BLAST results are available for this feature:

BLAST of Clc03G01070 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038894517.1	4.5e-72	75.21	serine/arginine-rich splicing factor SR45a isoform X1 [Benincasa hispida]	[more]
XP_008457405.1	5.7e-67	69.57	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
XP_004145262.1	1.4e-60	66.27	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
KAG6607292.1	4.4e-51	63.52	Serine/arginine-rich splicing factor SR45a, partial [Cucurbita argyrosperma subs...	[more]
XP_023525006.1	7.8e-48	62.30	serine/arginine-rich splicing factor SR45a-like isoform X2 [Cucurbita pepo subsp...	[more]

BLAST of Clc03G01070 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	6.9e-15	45.81	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]

BLAST of Clc03G01070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C508	2.8e-67	69.57	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LXJ6	6.6e-61	66.27	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A6J1GBJ2	8.4e-48	61.89	serine/arginine-rich splicing factor SR45a-like isoform X5 OS=Cucurbita moschata...	[more]
A0A6J1GAS3	8.4e-48	61.89	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita moschata...	[more]
A0A6J1GBG9	1.3e-45	57.41	serine/arginine-rich splicing factor SR45a-like isoform X2 OS=Cucurbita moschata...	[more]

BLAST of Clc03G01070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.1	4.9e-16	45.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..77
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..219
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..53
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..131
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01070.1	Clc03G01070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003676	nucleic acid binding