Clc03G01060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G01060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Serine/arginine-rich splicing factor SR45a-like
Location	ClcChr03: 945825 .. 946603 (+)
RNA-Seq Expression	Clc03G01060
Synteny	Clc03G01060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGTAACTTCTTGCTGAGGAAGCATGTGCTTGTTTGGTTTTCCCACTTCTCTAAATCATACGTACATATGCCTTTATTCTTATTTTGCGGATTCTCAATTTGTTTTTCAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTACGTTCCTGTTCTCTTATTTTCTTTAAACTTCTTATTTTCTTGGCTTGTATTCTTAGTGGCCGTGTTTGTATTTTGTCTTCTGTGTTGGTGATTTAAATTATGCACTATTTTCAATTCATGTATGAATTTTTCTATATTTCAGGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGGTAAAAGTTTCACCAAGTATTTTTTTCAAAGACTTGGGATGTTTCCCATTATTACTCATCTTGTTCTTTAACCTCAAATATTTACGGGATCTCTGGATGGTTTGTTGTTAGAGATTTGAGTATTTTTGCTTCTTTGCACTTGAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAG

mRNA sequence

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAG

Coding sequence (CDS)

ATGTCATACTCCCGAAGGTCTAGGTATTCCCGCTCCCCATCATACAAACGATCAGTCTCAAGGTCCCTGTCAAGGTCAAGGAGCCGTTCGAGGAGCCCTTCAAGTGACGTTGAAAATCCTGGGAACAACTTGTATGTCACTGGTTTGTCACCTAGAATAACAAGAAGAGAACTTGAGAAGCATTTTTCTGCTGAGGGAACAGTGCTAGATGTTCATCTTGTGGCCGATCCATTGACTAGAGAATCTCGTGGATTTGGATTCATTACCATGTCTAGTATTGATGAGGCAGAAAATTGCATCAAATATCTGAATCGATCTGTACTTGAAGGTCGTATAATTACTGTGGAAAAGTTTTTTTGGCAGCAGGTTAGCTGTATGTAG

Protein sequence

MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKFFWQQVSCM

Homology

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BLAST of Clc03G01060 vs. NCBI nr
Match: XP_004145262.1 (serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothetical protein Csa_023227 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. NCBI nr
Match: KAA0031790.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 218.8 bits (556), Expect = 2.7e-53
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

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BLAST of Clc03G01060 vs. NCBI nr
Match: XP_008457405.1 (PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo])

HSP 1 Score: 217.6 bits (553), Expect = 6.0e-53
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. NCBI nr
Match: TYJ97341.1 (serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa])

HSP 1 Score: 217.6 bits (553), Expect = 6.0e-53
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. NCBI nr
Match: XP_022970546.1 (serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima])

HSP 1 Score: 216.9 bits (551), Expect = 1.0e-52
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKFF 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CIKYLNRSVLEGRIITVEKFF
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKFF 119

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BLAST of Clc03G01060 vs. ExPASy Swiss-Prot
Match: Q84TH4 (Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR45A PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-33
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

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BLAST of Clc03G01060 vs. ExPASy Swiss-Prot
Match: Q10422 (Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC25G10.01 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 8.3e-13
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 20  SRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLT 79
           + S +  +   +S     EN GN+L+V+G++ R+   EL++ FS  GTV  V ++ +P+T
Sbjct: 79  NESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVT 138

Query: 80  RESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           + SRGFGF++ S+++EA + I  LN     GR++ V+K
Sbjct: 139 KASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQK 176

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BLAST of Clc03G01060 vs. ExPASy Swiss-Prot
Match: Q80YR5 (Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 3.5e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 41  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI 100
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ DEA  CI
Sbjct: 450 GRNLWVSGLSSSTRAADLKSLFSKHGKVIGAKVVTNARSPGARCYGFVTMSTSDEATKCI 509

Query: 101 KYLNRSVLEGRIITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 510 SHLHRTELHGRMISVEK 526

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BLAST of Clc03G01060 vs. ExPASy Swiss-Prot
Match: Q39061 (RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.5e-11
Identity = 34/72 (47.22%), Postives = 45/72 (62.50%), Query Frame = 0


Query: 44  LYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYL 103
           LYV  L   IT  EL + F   GTV+DV +V D +T  SRGFGF+TM SI+EA+  ++  
Sbjct: 118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMF 177

Query: 104 NRSVLEGRIITV 116
           N S + GR + V
Sbjct: 178 NSSQIGGRTVKV 189

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BLAST of Clc03G01060 vs. ExPASy Swiss-Prot
Match: Q14151 (Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 7.8e-11
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 0


Query: 41  GNNLYVTGLSPRITRRELEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCI 100
           G NL+V+GLS      +L+  FS  G V+   +V +  +  +R +GF+TMS+ DEA  CI
Sbjct: 406 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCI 465

Query: 101 KYLNRSVLEGRIITVEK 118
            +L+R+ L GR+I+VEK
Sbjct: 466 SHLHRTELHGRMISVEK 482

[Close]

BLAST of Clc03G01060 vs. ExPASy TrEMBL
Match: A0A5A7SM07 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00310 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. ExPASy TrEMBL
Match: A0A0A0LXJ6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 115/117 (98.29%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHLVADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. ExPASy TrEMBL
Match: A0A5D3BFE7 (Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001490 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.9e-53
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. ExPASy TrEMBL
Match: A0A1S3C508 (serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC103497100 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.9e-53
Identity = 114/117 (97.44%), Postives = 116/117 (99.15%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPS+KRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK
Sbjct: 1   MSYSRRSRYSRSPSFKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HFSAEGTVLDVHL+ADPLTRESRGFGFITMSS DEAENCIKYLNRSVLEGRIITVEK
Sbjct: 61  HFSAEGTVLDVHLLADPLTRESRGFGFITMSSNDEAENCIKYLNRSVLEGRIITVEK 117

[Close]

BLAST of Clc03G01060 vs. ExPASy TrEMBL
Match: A0A6J1I0W1 (serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469489 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 5.0e-53
Identity = 113/119 (94.96%), Postives = 116/119 (97.48%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEK 60
           MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPR+T+RELEK
Sbjct: 1   MSYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRVTKRELEK 60

Query: 61  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKFF 120
           HFSAEGTVLDVHLVADP TRESRGFGFITMSS +EAE CIKYLNRSVLEGRIITVEKFF
Sbjct: 61  HFSAEGTVLDVHLVADPWTRESRGFGFITMSSNEEAERCIKYLNRSVLEGRIITVEKFF 119

[Close]

BLAST of Clc03G01060 vs. TAIR 10
Match: AT1G07350.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 159.5 bits (402), Expect = 1.8e-39
Identity = 87/129 (67.44%), Postives = 101/129 (78.29%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 1   MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 60

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 120
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 61  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 120

Query: 121 FFWQQVSCM 127
           F WQQV C+
Sbjct: 121 FLWQQVCCL 129

[Close]

BLAST of Clc03G01060 vs. TAIR 10
Match: AT1G07350.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-35
Identity = 81/120 (67.50%), Postives = 94/120 (78.33%), Query Frame = 0


Query: 1   MSYSRRSRYSRSPS-YKRSVSRSLSRSRSRS--RSPSSDVENPGNNLYVTGLSPRITRRE 60
           MSYSRRSRYS S S Y +   RS+SRS SRS  RS SSD ENPGN+LYVTGLS R+T R+
Sbjct: 31  MSYSRRSRYSPSLSPYDKRRGRSVSRSLSRSPTRSVSSDAENPGNSLYVTGLSHRVTERD 90

Query: 61  LEKHFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           LE HF+ EG V DVHLV DP TRESRGFGFI+M S+ +A  CI+ L+ SVL+GR+ITVEK
Sbjct: 91  LEDHFAKEGKVTDVHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEK 150

[Close]

BLAST of Clc03G01060 vs. TAIR 10
Match: AT4G35785.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 129.4 bits (324), Expect = 2.0e-30
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPSSDVENPGNNLYVTGLSPRITRRELEKH 61
           S SR    SRS S  R VS S SR RSRSRS  S+VENPG  LYVTGLS R+T ++LE H
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGSEVENPGTTLYVTGLSTRVTDKDLEAH 90

Query: 62  FSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           F+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE+
Sbjct: 91  FAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 146

[Close]

BLAST of Clc03G01060 vs. TAIR 10
Match: AT4G35785.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 125.2 bits (313), Expect = 3.8e-29
Identity = 74/124 (59.68%), Postives = 86/124 (69.35%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEKFFW 121
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE+   
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVERKIL 150

Query: 122 QQVS 125
            Q +
Sbjct: 151 HQAT 154

[Close]

BLAST of Clc03G01060 vs. TAIR 10
Match: AT4G35785.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 124.8 bits (312), Expect = 5.0e-29
Identity = 73/117 (62.39%), Postives = 84/117 (71.79%), Query Frame = 0


Query: 2   SYSRRSRYSRSPSYKRSVSRSLSRSRSRSRSPS-SDVENPGNNLYVTGLSPRITRRELEK 61
           S SR    SRS S  R VS S SR RSRSRS   S+VENPG  LYVTGLS R+T ++LE 
Sbjct: 31  SRSRPRLRSRSRSLPRPVSPSRSRGRSRSRSRGRSEVENPGTTLYVTGLSTRVTDKDLEA 90

Query: 62  HFSAEGTVLDVHLVADPLTRESRGFGFITMSSIDEAENCIKYLNRSVLEGRIITVEK 118
           HF+ EG V    LV +P TR SRGF F+TMSS+ +AE CIKYLN+SVLEGR ITVE+
Sbjct: 91  HFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLKDAERCIKYLNQSVLEGRYITVER 147

The following BLAST results are available for this feature:

BLAST of Clc03G01060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145262.1	2.7e-53	98.29	serine/arginine-rich splicing factor SR45a [Cucumis sativus] >KGN65784.1 hypothe...	[more]
KAA0031790.1	2.7e-53	98.29	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
XP_008457405.1	6.0e-53	97.44	PREDICTED: serine/arginine-rich splicing factor SR45a-like [Cucumis melo]	[more]
TYJ97341.1	6.0e-53	97.44	serine/arginine-rich splicing factor SR45a-like [Cucumis melo var. makuwa]	[more]
XP_022970546.1	1.0e-52	94.96	serine/arginine-rich splicing factor SR45a-like isoform X4 [Cucurbita maxima]	[more]

BLAST of Clc03G01060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84TH4	1.1e-33	67.50	Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q10422	8.3e-13	36.73	Uncharacterized RNA-binding protein C25G10.01 OS=Schizosaccharomyces pombe (stra...	[more]
Q80YR5	3.5e-11	42.86	Scaffold attachment factor B2 OS=Mus musculus OX=10090 GN=Safb2 PE=1 SV=2	[more]
Q39061	4.5e-11	47.22	RNA-binding protein CP33, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP33 ...	[more]
Q14151	7.8e-11	42.86	Scaffold attachment factor B2 OS=Homo sapiens OX=9606 GN=SAFB2 PE=1 SV=1	[more]

BLAST of Clc03G01060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SM07	1.3e-53	98.29	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A0A0LXJ6	1.3e-53	98.29	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G528490 PE=4 SV...	[more]
A0A5D3BFE7	2.9e-53	97.44	Serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3C508	2.9e-53	97.44	serine/arginine-rich splicing factor SR45a-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1I0W1	5.0e-53	94.96	serine/arginine-rich splicing factor SR45a-like isoform X4 OS=Cucurbita maxima O...	[more]

BLAST of Clc03G01060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07350.2	1.8e-39	67.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G07350.1	7.9e-35	67.50	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.1	2.0e-30	62.93	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.3	3.8e-29	59.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G35785.2	5.0e-29	62.39	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 43..116 e-value: 8.7E-23 score: 91.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 44..113 e-value: 9.0E-16 score: 57.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 42..116 score: 15.698528
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..121 e-value: 2.0E-26 score: 94.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 8..118
None	No IPR available	PANTHER	PTHR15241:SF351	SERINE/ARGININE-RICH SPLICING FACTOR SR45A-LIKE ISOFORM X1	coord: 8..118
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 31..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G01060.1	Clc03G01060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048026	positive regulation of mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding