Clc03G00910 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc03G00910
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr03: 821847 .. 823002 (-)
RNA-Seq Expression	Clc03G00910
Synteny	Clc03G00910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGTAAGCAACTATCCTTAAGAGGGTGTTTAGCCCAAGGAGTTGGAAGAGTAAGAGTTGACATGAAACCGTAAGCTTCCAAGCAGTGGTGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCCAACTTCACTTCCCTCCTTGTTTGTCCGTGGAGATTGTGTGTCCCGCTACTAAAAACATATCAATTTTATATTGGGAGTTTTAGAAGTTCATAATTTCTCAAACTTCATAACTTCTTAGACTTCACAACTTCCCTTCTTGTCAAGAATGTCTCCTAAGGGATTGTTTGGATATACTTTAAACCTAAACATAAATAAGTATTGTAATTTTCACTCTCGATTAAATTTTCACTAAGTCACTCACTAATTTTAATAAAAAAAAATAGTGTTAAAATCTTTATAAACTCATAAATTTTAGTAAAATAAAATTTCGTCCAAAAATAAGTTGAAAATAAGTTTGACCAATGTATAAACTAATCCTAGAATAACTATATCAAATTTTGTAAATTTCAACTAAAAGTCTAGCTTAGTGTCATTTTTCTCTATATTTTTATCAATTTCATAGTTTACACATGCTTTATAATTCATTGAAGAAAAAATTACGTGAGACTGCACTCTGCACTACTTTAAAAGGTTGAGGGTTATGATTATGAAAACTTACGACTACTCAAAATTGATATAAGTTGTTGAGGGTTATGATTATGAAAACTTCCGACTACTCAAAATTGATATAAGTTTGGAGGGCAAAATTGATATTTCCGCTACTATATATTTTATATTTTCGGTTGGAAACTCCACCCCGTAAATTTCGAAGCCATCTCTGATTGAAGACTGTGTATTGAGCTTGGACTTTGGGCTACGGCACGTCCTCCAAGCCCAACGAGATACAATTCGGCCCAAATTAGGCCCAATTCCCGGCCCATTCCCAGAAATTCCGCGCTAAAGCGAGATAATTCAAAAAAAGGTTTCCGTCACAAAGAAGCAAGCTCTTTGCTGCTACTTGCAGCAATCCTTCTCATCCATCAATGGCCGCTCTTCGCCTCTCACTCAGAGATTCGCGCTCACCGCTCATGGATGACGATGGAGTCATTTGACTTTGAAAGAAGAAGCAGAAAGAAAGATAGGAAGAAAGCAAGAAGCTGA

mRNA sequence

ATGAGAGGTAAGCAACTATCCTTAAGAGGGTGTTTAGCCCAAGGAGTTGGAAGAGTAAGAGTTGACATGAAACCACTGTGTATTGAGCTTGGACTTTGGGCTACGGCACGTCCTCCAAGCCCAACGAGATACAATTCGGCCCAAATTAGGCCCAATTCCCGGCCCATTCCCAGAAATTCCGCGCTAAAGCGAGATAATTCAAAAAAAGGTTTCCGTCACAAAGAAGCAAGCTCTTTGCTGCTACTTGCAGCAATCCTTCTCATCCATCAATGGCCGCTCTTCGCCTCTCACTCAGAGATTCGCGCTCACCGCTCATGGATGACGATGGAGTCATTTGACTTTGAAAGAAGAAGCAGAAAGAAAGATAGGAAGAAAGCAAGAAGCTGA

Coding sequence (CDS)

ATGAGAGGTAAGCAACTATCCTTAAGAGGGTGTTTAGCCCAAGGAGTTGGAAGAGTAAGAGTTGACATGAAACCACTGTGTATTGAGCTTGGACTTTGGGCTACGGCACGTCCTCCAAGCCCAACGAGATACAATTCGGCCCAAATTAGGCCCAATTCCCGGCCCATTCCCAGAAATTCCGCGCTAAAGCGAGATAATTCAAAAAAAGGTTTCCGTCACAAAGAAGCAAGCTCTTTGCTGCTACTTGCAGCAATCCTTCTCATCCATCAATGGCCGCTCTTCGCCTCTCACTCAGAGATTCGCGCTCACCGCTCATGGATGACGATGGAGTCATTTGACTTTGAAAGAAGAAGCAGAAAGAAAGATAGGAAGAAAGCAAGAAGCTGA

Protein sequence

MRGKQLSLRGCLAQGVGRVRVDMKPLCIELGLWATARPPSPTRYNSAQIRPNSRPIPRNSALKRDNSKKGFRHKEASSLLLLAAILLIHQWPLFASHSEIRAHRSWMTMESFDFERRSRKKDRKKARS

Homology

[Close]

BLAST of Clc03G00910 vs. NCBI nr
Match: KAG6583376.1 (GDP-mannose transporter GONST2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 60.8 bits (146), Expect = 9.6e-06
Identity = 41/86 (47.67%), Postives = 48/86 (55.81%), Query Frame = 0


Query: 41  PTRYNSAQIRPNSRPIPRNSALKRDNSKKGFRHKEASSLLLLAAILLIHQWP------LF 100
           PTR + AQ    + P P +SALKR NSK     + +          LIHQWP       F
Sbjct: 2   PTRSDKAQF---NGPSPSSSALKRGNSKI-IPSRRSKIFAASCGNPLIHQWPSLNLLGFF 61

Query: 101 ASHSEIRAHRSWMTMESFDFERRSRK 121
           AS SEIRA RSWMTME FDF RR ++
Sbjct: 62  ASSSEIRARRSWMTMEQFDFRRRKKE 83

The following BLAST results are available for this feature:

BLAST of Clc03G00910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583376.1	9.6e-06	47.67	GDP-mannose transporter GONST2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc03G00910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G00910 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc03G00910 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc03G00910.1	Clc03G00910.1	mRNA