Clc03G00280 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAAGAATTGTGTACGGTAAGAAAAATTGAGGACCCAATAAGATAGGGAAAGAGGAAGACCACAAAAACAACATGAAAGCTTTATTGAGTCATTGGTGGTAGCAATTAATTAGGTAATTATTGAGCCATGGATTGATATTCTCTTAACAAGGAGGCAATAATGGCAGCCATAATATTACAGTTTGCCTGATGAATATTGGAGAAACAACAGTTGAAGAACCAATATCAACATTCAACGTAGTAGTAGCTGCTATAATCATCCATTAGAGCAGGTACACCTTTTAGATTTTAGCTCAAACCTGTTGTTTTGTTTTATTTCTGTGTTCCTCCTCCATAGCTTTTTTTTTTTTTTTCATAATTTATTACACTAATTTGAAATTTGAATGATTTATAAAATCAATAATAAGGAGGGTGTTGGATCTTAATTAAGGGTTAGATCCTAGATTAGCGATCAAGTTGTAATCTGCCCTCTTCATTTCTGCCTTTGTTTTGGGGTCAACACTCAAATCACACACACATGGACATCACCAAATTCATCCATATGCATATGCAGATGTAGATGTGTGCACAGTTTTTTTGTCTTTCATATTATCATTGACCAACTATTAATTAACCATCTAACTACTATCATGAGATGTGATTTCATGTGTAATCAATTTAGAAAATGACTTACACTGAGTAAATTAATATATGTATAAAGATTTGAGATATAATTATGATATTTTATTTGAAACTTGGCCCACCCCATCACAAAGTATTGATTAAAATATAATAAATAGGAGGTGTATCAAGTTAGACCCTGGACTCTTGTAAGTATATCAATTTACACCCTCCATTTATGTTCTATTTGGAAAAATATTGTGGAAAACTTAGTATTAATTAAACTCGTAAACTTTCATAAACAAATTAATTTAGACTCTTAGACAAAATTTCCTTTGAAAATCATTCATGCTTTTACTCAAATTCTCCATTTTGTAAAACCGACATTTGAAGAAGTCTACACACGTCTAAGAATTAATGCATGAACGATTTCAAAGTAATCATAATGAAAAACCTAAATTGATTAGTTTATGAAAATCTAAGAGTTTAATAAACTTTAAATTATAAGTTTCACACAATATTGATCAAATAAAATTCAACAGTTTAAAATTAATACAATTATAGTATAATAACTATGGTGTGTTGTCTTTCTTTTACCCACACAAAAAAAAATATATATTAAAAATGTGCTAGGTGGCACAATTTTATTGGATACTGACCCAGGCTATATTCCTATATATACGTGTGTGTGTGGATTTTGGAGTTGCTAGATGATGGTGAAAATTGAAACAGGGAGAAAGGAAAGATGAATAATATGGGAAGAAATAGAGGAGATTTGGGAGGAAGATCAGGGAAGATGAGACTGAAGAAGGTAAGAAGAAGAGACGACATGTCGATGGTGGGGGAAGATTACCATACAGAAGTATCAGCGTCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGGACTCCAAAGGCTAATTTGGTTGAGAATAGGGCTCTCCTTTCTCCTCTAACACCTCCACCTTCATATTTCTCCAATCACACTAATTCCCCTCTGCCTCTCACCCATATTCCTTCTTATAAGCCAAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTCTCAAGCCCACTCCCCACCCTCCCTCCCCCACTTCTTTCTCCTCCTCCTCCCCCTCCTCCTCTTCCTCTACCAGACCAGGAACCCCAAGGAGATTGTCCTTTGATTCCAGGGTGGACGACGACGACAATGACAACGACAACGACAACTACAACTACAACGACGACCACAATGTACAATCACCTGTTTCTACTTTGTTCTTTGCACGTGGAAGTGATAAAGGATGCTACCCAAAATTGGCCAAGGTATTCACCAGAGATTCTAAATGAAAACACAGTTTTTTTTTTTTTTA GAAGAATTGTGTACGGTAAGAAAAATTGAGGACCCAATAAGATAGGGAAAGAGGAAGACCACAAAAACAACATGAAAGCTTTATTGAGTCATTGGTGGTAGCAATTAATTAGGTAATTATTGAGCCATGGATTGATATTCTCTTAACAAGGAGGCAATAATGGCAGCCATAATATTACAGTTTGCCTGATGAATATTGGAGAAACAACAGTTGAAGAACCAATATCAACATTCAACGTAGTAGTAGCTGCTATAATCATCCATTAGAGCAGGGAGAAAGGAAAGATGAATAATATGGGAAGAAATAGAGGAGATTTGGGAGGAAGATCAGGGAAGATGAGACTGAAGAAGGTAAGAAGAAGAGACGACATGTCGATGGTGGGGGAAGATTACCATACAGAAGTATCAGCGTCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGGACTCCAAAGGCTAATTTGGTTGAGAATAGGGCTCTCCTTTCTCCTCTAACACCTCCACCTTCATATTTCTCCAATCACACTAATTCCCCTCTGCCTCTCACCCATATTCCTTCTTATAAGCCAAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTCTCAAGCCCACTCCCCACCCTCCCTCCCCCACTTCTTTCTCCTCCTCCTCCCCCTCCTCCTCTTCCTCTACCAGACCAGGAACCCCAAGGAGATTGTCCTTTGATTCCAGGGTGGACGACGACGACAATGACAACGACAACGACAACTACAACTACAACGACGACCACAATGTACAATCACCTGTTTCTACTTTGTTCTTTGCACGTGGAAGTGATAAAGGATGCTACCCAAAATTGGCCAAGGTATTCACCAGAGATTCTAAATGAAAACACAGTTTTTTTTTTTTTTA ATGAATAATATGGGAAGAAATAGAGGAGATTTGGGAGGAAGATCAGGGAAGATGAGACTGAAGAAGGTAAGAAGAAGAGACGACATGTCGATGGTGGGGGAAGATTACCATACAGAAGTATCAGCGTCAGTGCCATTCAAGTGGGAGTCAGAGCCAGGGACTCCAAAGGCTAATTTGGTTGAGAATAGGGCTCTCCTTTCTCCTCTAACACCTCCACCTTCATATTTCTCCAATCACACTAATTCCCCTCTGCCTCTCACCCATATTCCTTCTTATAAGCCAAATTTCCTCAACTCTGTCTTCAGGAAGCTTTCTCTCAAGCCCACTCCCCACCCTCCCTCCCCCACTTCTTTCTCCTCCTCCTCCCCCTCCTCCTCTTCCTCTACCAGACCAGGAACCCCAAGGAGATTGTCCTTTGATTCCAGGGTGGACGACGACGACAATGACAACGACAACGACAACTACAACTACAACGACGACCACAATGTACAATCACCTGTTTCTACTTTGTTCTTTGCACGTGGAAGTGATAAAGGATGCTACCCAAAATTGGCCAAGGTATTCACCAGAGATTCTAAATGA MNNMGRNRGDLGGRSGKMRLKKVRRRDDMSMVGEDYHTEVSASVPFKWESEPGTPKANLVENRALLSPLTPPPSYFSNHTNSPLPLTHIPSYKPNFLNSVFRKLSLKPTPHPPSPTSFSSSSPSSSSSTRPGTPRRLSFDSRVDDDDNDNDNDNYNYNDDHNVQSPVSTLFFARGSDKGCYPKLAKVFTRDSK Homology
BLAST of Clc03G00280 vs. NCBI nr
Match: XP_038894794.1 (uncharacterized protein LOC120083212 [Benincasa hispida] >XP_038894795.1 uncharacterized protein LOC120083212 [Benincasa hispida]) HSP 1 Score: 240.0 bits (611), Expect = 1.7e-59 Identity = 143/200 (71.50%), Postives = 151/200 (75.50%), Query Frame = 0
BLAST of Clc03G00280 vs. NCBI nr
Match: XP_008457312.1 (PREDICTED: uncharacterized protein At4g00950 [Cucumis melo] >KAA0060003.1 NADPH oxidase activator [Cucumis melo var. makuwa] >TYJ97261.1 NADPH oxidase activator [Cucumis melo var. makuwa]) HSP 1 Score: 219.9 bits (559), Expect = 1.9e-53 Identity = 135/204 (66.18%), Postives = 156/204 (76.47%), Query Frame = 0
BLAST of Clc03G00280 vs. NCBI nr
Match: XP_004145232.1 (uncharacterized protein LOC101203250 [Cucumis sativus] >KGN65857.1 hypothetical protein Csa_023180 [Cucumis sativus]) HSP 1 Score: 212.2 bits (539), Expect = 3.9e-51 Identity = 134/205 (65.37%), Postives = 158/205 (77.07%), Query Frame = 0
BLAST of Clc03G00280 vs. NCBI nr
Match: XP_023519368.1 (uncharacterized protein LOC111782803 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 206.8 bits (525), Expect = 1.6e-49 Identity = 119/178 (66.85%), Postives = 136/178 (76.40%), Query Frame = 0
BLAST of Clc03G00280 vs. NCBI nr
Match: XP_022970378.1 (uncharacterized protein LOC111469381 [Cucurbita maxima]) HSP 1 Score: 204.5 bits (519), Expect = 8.1e-49 Identity = 118/179 (65.92%), Postives = 135/179 (75.42%), Query Frame = 0
BLAST of Clc03G00280 vs. ExPASy TrEMBL
Match: A0A5D3BF70 (NADPH oxidase activator OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00550 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 9.0e-54 Identity = 135/204 (66.18%), Postives = 156/204 (76.47%), Query Frame = 0
BLAST of Clc03G00280 vs. ExPASy TrEMBL
Match: A0A1S3C5A7 (uncharacterized protein At4g00950 OS=Cucumis melo OX=3656 GN=LOC103497034 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 9.0e-54 Identity = 135/204 (66.18%), Postives = 156/204 (76.47%), Query Frame = 0
BLAST of Clc03G00280 vs. ExPASy TrEMBL
Match: A0A0A0LYC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G533640 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 1.9e-51 Identity = 134/205 (65.37%), Postives = 158/205 (77.07%), Query Frame = 0
BLAST of Clc03G00280 vs. ExPASy TrEMBL
Match: A0A6J1I3P2 (uncharacterized protein LOC111469381 OS=Cucurbita maxima OX=3661 GN=LOC111469381 PE=4 SV=1) HSP 1 Score: 204.5 bits (519), Expect = 3.9e-49 Identity = 118/179 (65.92%), Postives = 135/179 (75.42%), Query Frame = 0
BLAST of Clc03G00280 vs. ExPASy TrEMBL
Match: A0A6J1HLP7 (uncharacterized protein LOC111464733 OS=Cucurbita moschata OX=3662 GN=LOC111464733 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 7.4e-48 Identity = 116/178 (65.17%), Postives = 131/178 (73.60%), Query Frame = 0
BLAST of Clc03G00280 vs. TAIR 10
Match: AT3G56260.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G40475.1). ) HSP 1 Score: 58.9 bits (141), Expect = 5.1e-09 Identity = 61/169 (36.09%), Postives = 82/169 (48.52%), Query Frame = 0
BLAST of Clc03G00280 vs. TAIR 10
Match: AT1G06930.1 (unknown protein; Has 4478 Blast hits to 355 proteins in 82 species: Archae - 0; Bacteria - 29; Metazoa - 379; Fungi - 125; Plants - 120; Viruses - 25; Other Eukaryotes - 3800 (source: NCBI BLink). ) HSP 1 Score: 54.7 bits (130), Expect = 9.7e-08 Identity = 60/170 (35.29%), Postives = 78/170 (45.88%), Query Frame = 0
BLAST of Clc03G00280 vs. TAIR 10
Match: AT2G40475.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56260.2); Has 477 Blast hits to 219 proteins in 41 species: Archae - 0; Bacteria - 4; Metazoa - 91; Fungi - 61; Plants - 144; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). ) HSP 1 Score: 51.6 bits (122), Expect = 8.2e-07 Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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