Clc02G25850 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G25850
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NusB domain-containing protein
Location	ClcChr02: 37380644 .. 37386793 (+)
RNA-Seq Expression	Clc02G25850
Synteny	Clc02G25850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCCCCATCCGATTCGGCTTATTTCCGACCAAACAAGTCGGAAGAAGTATTGGTTCAGAAACCATCTTCCTTCTTCCACTACTGGAAATGCCTTTGCCTCCAAATCCCCAGTGAGTAGCGTGGGCTGAATTTGGGGCATTTTCAAAATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATCCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACACTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGTTTCTCTTTCATTTGCCATTTCTATGTCCTTCCCCTTCTTCTGCTCTCTATCCTTTACCTACTCCTCTGTTTCCTTTTCAATTCAAACTCTGCTTCCTAAATCTTGCTCACTATGATCACCATGTAAGCAGAATTAAGGAATTAATGGTGAATCTTGGCTAAATTCATGTCAATCGTTTTTAGTTTCTTATTTTGAATTTTAATTCCTCTTTAATTTCCTTTTAGGATTTCATTCTCGCCCTCCCTCATGCATTCTCTACGACTTTGATTCATAATTATAAGTTTTTTTTTTTTTTTTTTTTTGCATAAGAAATTCATAATAATAAGTTTTGAAATTTGATTCTTGGAGAATTCTTTCCTTTGGGTCCTTTAAGCTACATCAGTTCACCAACAATTGACCTCTCTGTTTATTTCGCACGCTTAGAAATTTGAATTGTGAAATGGAAACCATAGGATGTGGCATGTCTCTTCACTTCATACTAGTTACTCCCTCTGTATACTTGCATTATCTTTACGACTTTCCAGATGGTGGATGCGGGGTCAATGCGTAACATTTGCTTTAAAGGTTGTTTTTTGGGTCTTTCCTTAGTAGTCTGAAGTTAGGCTATACCAGATGGCACCTGGATGAGACATCGAGATAACACGACCGCCATTTTATACTGGTCAACAGTAACGAACTTGGTTTTATGTAATGCAATCTATGGTTACTACGTTGAAAAACACTGCTGAAACTAAAAGCTTCTTCTTCCAAATACTCTCTCACTTGTGAGCTTGGAATAAGCTTAAGAACTTAGGGTGTGATTGTGGAGAGGAATTGGGAGAGGTGGAGTTGTTTGGCCGAAGGAGTTATTAAAAGCATTGTAAATCCCATGACTCATTAGCATCGATTCCACATTTATTAACTCCTTAAATTGTGGTTTATGTCTAATTGACACAGCTGCTAGAGGCAAGGGTGAACTTTGATGCCAGAAAATTGTCTTATTGTTATTTTACCTAGTTTTTCTTAAAGAAAGTAAAAGGGAAAAAAGAAAGAGAAAGATATAGTCCATGATTTCTAGATATCTCTTGAAAACGTGACTTAGCATGCCTAATTTTCATTCTTGCTCTTCGTCTCTGTGCTTCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTAAGATCCATCATTTCCTTTTTTTTCCTAACATATGAATATCTCCTCTCTACCTTTTTACCTATTCAAAAAGTTGGCCTACTCACCCAGAATATACTCTAAGAATTTGTTTAATTTCTAGACTTGTAATCAATTCTAATCGGATTATTCGATCACAGGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGGTAATCTATGGTTGAGACATGATACATGGTTTCTATTGCCGCCCCATATACTATTTGGTGTCTGTGTGTTTTTTATATATTTATATAATTTCAAAAAATATAAAAAAAAAAAAAAAGATTGTGTTGGGGAAATAGATGTCACATATTTAACTCAAATATAAAACCAACTTCTTGCTTTATTTGTTTGTACAATTCAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGGTAAACAATTACGTGACCTTCGTATATATATTATTTCTTCTTCTTAATTCACTCATTACTTTATATTAAAAACAGAATTGGACCCTAAAAGAGACAAAACTTTTTAGAGGAAAAGAGAGACTACCGCTGAAAGGATACAAATTCCTAATTCCTAAAGGAGTAAAAATGAAAAAGAAAAGCATAGAAATAAAAGATTCCACAAACCATAACAAATGATATTCTTAAAAACTTAACAAAGAATTAATACATTAACGTCAAGCATGGGTATGAACGTCGAGTTGCCCATAGAAGTTGGAGTAGATGTCCAAAAGCTCCAACAAGTATTGAAAAATTGCAATCTTCTGTTTAGGTAACTTTATTTGACAAAGAAGCTTTTCCTTCTAAATTTTAACCTCTTCTTCATCAAGAAGTGTTATTAACGCTGATTAAATAACAGGACTGTATTAGGTTCCATGAGAAATGTTGAAAATAAAACTCAAAGAGGCCCTTGAAGATAAAATTCTCACATCGTTGAAATGGATATATAGAGGGGAGAAATGCCAAAAAACTCTTGAACTTCCAGAAGAAAAGTTTCAACTCTTTTTATTTTTTATTTTTATATAATTAATGCAGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCATATGGATCAATGCAGAAGGGTCAGAAGATTTGCAGGGCACACATGGATAAATATTTTTGGTATGTTTGGAGAGTTGACAAATCTTGCACTGAAAATGACTTGATTTCTTATTAATGAATAACCGAGGTAACAATTTTTCAAATATGAAAAATTTGGATGACCGAGAAAAAAGTTCTACAACATGACTTTGCCTTAACAAGACAAGGATTTAAAACTGGAAGTAGATTCGGGAATAAGGGTATGTTGGGAATATATTTTCAAGTGTTTAATTTAAAAAATAAGTCATTTTGAAAAATTGAAGTGTTTGGCAACCACTCAAAATAGATTTTGAAGTGTATTTTGAACGGTTTTTATAAAAAGAGTTATAAAAATGAGTTTTTTGAAAATTACTTTTTCTTCAAGTCAATCCAAATAGGCCCTAAAACTACAAAATTGAGAAAATACTCACAACTAAGACTGGAATATGATTTTGAGGGATTAACCACAAATTTGACGGAGGGATCAAGGATTCTACCAAAAGCAAAACTCAAAGGGCAAAATGTCACTTTTGAAAATTTAGAAACCCAAATGCAACCAAACCCAAAACTTAGGAACTAAAGTTTATTTTTCCCATGTGTTTTCTATAGTTGTAAATGCAGTATTGTCTAGCCTCAAAGTCCGATTTTATTGCGGTTAGTATTAAAGTTCTGTTTTCTGCATGACCGTATCTCAGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGTAAACGTGGTTTATATTCCCCTGCCTTTGGCAGAGGAAGATAAGATGACAATTTAGTATGAATTTCATGTATTTTATCAATGTTATTTACTTCAAGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGGTCGTGTGAAAAAAGCTTGTTTCTTTTTGCTAATTTATTTTCTGATTTTCTCTTCTCTTCTAGTTGGGAATATACGTTGAACCATTTATCATGCGATTATAATACTCCTGAGCTGATCATTGCCTCATAATCATAGCATATGTGTGCTTTTTACAACACTTACAGAAATTTGAAAAGCTTTGTATGATGGTGTCAAGGATGGAACCACAAACACATGTGCACTATTTCATCCATGGATATTGTTGAATTTCTCGTGTGTTAGAAACTCTGAGCTTTAATTATCGAAGGTTTGAGCTTAGTGATAAACATCCTTGGACTCACAAACAGTTAATGGTTTCAAAATTTGTTGGATCTCCATTCCAGAATTTTATATCTTACAGGTTCTTGACAACATAATTATATAGTCTTCCAAGTTTGAACCCAGAAAATATTAAGCTGTTGATGTTTTTATGGGGTTAAAATAAAACCTTTAGCAACCATCATAAGACAGCCTAGTGGTAAATAAGGGAACATTCCCTTGATGCAGGGCTAAGAGGTCATGGATTCAATCTATGGTGGCCACCTACTTATGGATTTAATTTCTTGTGAGTTTCATTGATACCCAAATCCATGGTAATCACCTATTTAAGATTTAATATCTCACGAGTTTCCTTGACACCAAAATGTTGTAGGGTTAAGTGAACCTTTAGCCTTTAGCCTTGAGAACATGAATTTTGTCAATAGTCATCTAGATATGCAACTAGGTTAAGCGCTATACAAAAGTATTGTCATGCTATCAAATTTTTTCTTTTCCAAAAAAGTGTACTTTTCAATAACCAAAGTTGTTGAAGCTTCCAGTTTCTCTGTGTTTGTTTATTTCATATGCTCTTAATAGTCGTGAACCTAAATTTGAATAATGTTATCTTTTGTTAATTATTTTTTGTTTGAATTCAATAAAGAGATCAACCCATCTAAACCTTTGAAATGGTAGTTGATGAATTACCTTTTGAGCTATGTTTGTAATGACGTGTTTTGTTAATCTATTAAATAAATCATTCCAGCCTTTATGTTATTCGTTATTCAGACATTGCAGTTGCGTGAATCCAAACCAAAGATCATGCGCTTGGACTTGAACTTCTTGAATTAAGTTGCAGATTTTTATGAATGTTTAAGATTTGTAATTTGTAAAGGTTCGGGAGTTTAAATATCACATGCATTCGTATATATTTCAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGTAAATGCGTCTTGAGCCATCTTACTTGAAAGTCTGTTGATATATATCTAACATCAATTCTCTTTTTGTTTAAAAAAATAATAATAATTGTTCTTGGTTATTGATGAAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGAGCCTGAACTTTTGTGGTGCCTCAGGACCCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTAGCTCGAGTAAGTGATTCTGGAGTCTCAACTTTTGGGGGTACGTCTATTAAACCTGTTGCTGTCAATAGCAGCTAAAGTGCAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTCTTTCCCTTCCCCTTGTAGGCGTGGATTTCTGTTATATCCAAATTATCCATAGAGTTAAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTTGGAGAGATGTTATCATGCACATAATATTATCAATGTATTGAAGGGTTTACTTTTTTCTTTTTCTTTTTTTTAATTTTTAAGTATGTGTCTCTCACCACTTTGTACGTGCCATATGGCTCAAAATGACTGTGGGGTAAGGCGAGTTGTCAATCCTTTCTCCCCAAAGTTGTGTGCTATGTAAGCCGTGTGGTTCCTCTTGTATGCTTTCTAGCCTACAACATTTGTTTTCTCAAATGTTTTCCAAA

mRNA sequence

ATTTTTCCCCATCCGATTCGGCTTATTTCCGACCAAACAAGTCGGAAGAAGTATTGGTTCAGAAACCATCTTCCTTCTTCCACTACTGGAAATGCCTTTGCCTCCAAATCCCCAGTGAGTAGCGTGGGCTGAATTTGGGGCATTTTCAAAATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATCCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACACTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCATATGGATCAATGCAGAAGGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGAGCCTGAACTTTTGTGGTGCCTCAGGACCCTTTGTAAGGATATCGAAGAATTTGACTCAACTCATGCTAGCTCGAGTAAGTGATTCTGGAGTCTCAACTTTTGGGGGTACGTCTATTAAACCTGTTGCTGTCAATAGCAGCTAAAGTGCAGTGATTTGAAGAATCTCATACTTGCCGCAAACCACAGCAAGAATTTCTTTCCCTTCCCCTTGTAGGCGTGGATTTCTGTTATATCCAAATTATCCATAGAGTTAAGTAATGAGGTGCATGATGTGTGAGAGAATAAGTTGTCAAATTAATCTAGTACTTGGAGAGATGTTATCATGCACATAATATTATCAATGTATTGAAGGGTTTACTTTTTTCTTTTTCTTTTTTTTAATTTTTAAGTATGTGTCTCTCACCACTTTGTACGTGCCATATGGCTCAAAATGACTGTGGGGTAAGGCGAGTTGTCAATCCTTTCTCCCCAAAGTTGTGTGCTATGTAAGCCGTGTGGTTCCTCTTGTATGCTTTCTAGCCTACAACATTTGTTTTCTCAAATGTTTTCCAAA

Coding sequence (CDS)

ATGTCTTTAGCTCCACCCACCTCCCCTTATCCGTTCCCCAAATCCTGCCTTCCTAACCATTTATCTTCCTCTACTCAATCTTCATCTTCCCATCCCAAACTCTTTCCCCCACACTCTCTCTTTCATCTTAGTTTCTCCACCTCCTTTTCAACCCTTCAGTCCCTTAAACCCTCACCTTTCATTGCCAGAGCGTCCGACATTGGACTCCGAGATTCCGTTCATGCTGACCAACCTGGTGATTCTGCCGACAAGACTGGACTCTTCACCCATGGGGATAAAGTTACTACTATCAGGCCTAATTTTCATTTCTCCTACCACATTTCTGGAATATGTCGTTTCCCGTTTCGTGCTAGTTCAATCGTTCCCCACGCAAAAGATCCCATGCCACACCTCTGCCCTCAAGCCTCACTTCGGGCTTCTACTTCTTTTTCTGAAAATTGTGTGGCTGAAGAGAGGAATTCTATTGCAGTTTCTTCCATTGAAACAATACCAAAGGTCGACAAGAGCGGTAAATTTTGTAGCCCCAGAGCTGCTAGAGAGCTCGCTTTGTCAATTGTTTATGCAGCTTGTTTAGAAGGCTCTGATCCCGTTCGACTCTTTGAGAAGCGGTTGAATGCCCGACGAGAATCGGGATATGAATTTGACAAGACATCATTAATGGAATATAATCATATGAGTTTTGGAGGCCCGCCAGTTACCGTAGAAACAGTTGAAGAAGCAGATGAGCTTTTACGCAAGGATGAAAAGGATTCTACAATTGTATCTAATGAAAGAATCAAGAGGACTACTAGTTCCAAGGCCCCAAATGTCATATGGATCAATGCAGAAGGAGGCAGAAATCCTCGCAGCCCCACCAAAGATGGTCTACAGCAAACTGATCTTACGGATGAAATAAGGTCAGCCATTGTCTTCATGGTTTTCAGGTTTACACGAAAACTTTTGGTTGCAGTTGTGGACGGATGGGACAGCCGTGTGCTTAAAATTGAAAAAGTCATTCCTCCAACTTGGAAGAACAAGCCAGCAGGACGGATTCTAGAGCTTTGTATTCTCCACCTGGCTATGTCTGAAATAACGGTTATTGGAACAAGGCATCAGATTGTCATTAATGAGGCCGTTGATCTTGCAAAACGATTCTGTGATGGAGCAGCACCCCGTATTATTAATGGGTGCCTTAGGACCTTTGTAAAGGACATCAAAGAAATTGATTCAACTCATGCTGGAGACAAGCAAGAAGTCCGGGCATGA

Protein sequence

MSLAPPTSPYPFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQPGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA

Homology

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BLAST of Clc02G25850 vs. NCBI nr
Match: XP_038901769.1 (uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida])

HSP 1 Score: 562.8 bits (1449), Expect = 2.5e-156
Identity = 311/439 (70.84%), Postives = 328/439 (74.72%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQ 60
           MSLAPP SPY       P PKSCLP+HLSS TQ   SH KLFP HSL H SFSTS STL 
Sbjct: 1   MSLAPPISPYLYSSHSHPLPKSCLPSHLSSLTQ--CSHSKLFPSHSLSHRSFSTSSSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           SLK        + +GL D   ADQ                  PG SAD TGLFT GDKV 
Sbjct: 61  SLKSK------THVGLGDLGDADQPCEEYEVELEQLSGLDFAPGASADNTGLFTVGDKVI 120

Query: 121 TIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSI 180
           T RPNFHFS HISGICRFPFRASSIVPH KD M HLCPQASLRASTSF ENCVAE+R+SI
Sbjct: 121 TTRPNFHFSLHISGICRFPFRASSIVPHVKDSMTHLCPQASLRASTSFPENCVAEDRSSI 180

Query: 181 AVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFD 240
           +VSS+ETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN RRE GYEFD
Sbjct: 181 SVSSVETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNTRRELGYEFD 240

Query: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINA 300
           KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDS       I+    +  P +++   
Sbjct: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSI------IEAEILAAPPKMVYSK- 300

Query: 301 EGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPT 360
                                        ++ RFTRKLLVAVVDGWDSRVLKIEKVIPPT
Sbjct: 301 -----------------------------LILRFTRKLLVAVVDGWDSRVLKIEKVIPPT 360

Query: 361 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 415
           WK+KPA RILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV
Sbjct: 361 WKDKPARRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 395

[Close]

BLAST of Clc02G25850 vs. NCBI nr
Match: XP_008449897.1 (PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo])

HSP 1 Score: 538.5 bits (1386), Expect = 5.1e-149
Identity = 305/439 (69.48%), Postives = 322/439 (73.35%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQ 60
           MSLAPPTS Y       P PKS    HLSS TQ   SHP LFP   LFHLSFSTSFSTL 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKS----HLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           S K S F     DIGL DS  A Q                  PG SA KT LF  GDKV 
Sbjct: 61  SFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVI 120

Query: 121 TIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSI 180
           T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI
Sbjct: 121 TTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSI 180

Query: 181 AVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFD 240
           +VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFD
Sbjct: 181 SVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFD 240

Query: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINA 300
           KTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DST      I+    +  P +++   
Sbjct: 241 KTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDST------IEAEILAAPPKMVYSK- 300

Query: 301 EGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPT 360
                                        ++ RFTRKLLVAVVDGWD+R LKIEKVIPPT
Sbjct: 301 -----------------------------LILRFTRKLLVAVVDGWDNRALKIEKVIPPT 360

Query: 361 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 415
           WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV
Sbjct: 361 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 394

[Close]

BLAST of Clc02G25850 vs. NCBI nr
Match: XP_004149639.3 (uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815.1 uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >KGN54018.1 hypothetical protein Csa_021656 [Cucumis sativus])

HSP 1 Score: 535.0 bits (1377), Expect = 5.6e-148
Identity = 299/419 (71.36%), Postives = 316/419 (75.42%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKSCLP---NHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS YP+     P   +HLSS TQ   SHP  F     FHLSFSTSFSTL SLK 
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQ--RSHPNFFSLCFPFHLSFSTSFSTLHSLKY 60

Query: 61  SPFIARASDIGLRDSVHADQ-------PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGI 120
           S F    +D GL DS  ADQ       PG SA KT LFT GDKV T RPNFHFSYHISGI
Sbjct: 61  SAF---KTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGI 120

Query: 121 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 180
           C+FPF ASSIVPH KD MP  C QASLRASTSFSEN VAEER+SI++SSIE IPKVDKSG
Sbjct: 121 CQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSG 180

Query: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240

Query: 241 PVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPRSPTKDGLQ 300
           PVTVET+EEADELLRKDE+DST      I+    +  P +++                  
Sbjct: 241 PVTVETIEEADELLRKDERDST------IEAEILAAPPKIVYSK---------------- 300

Query: 301 QTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCIL 360
                         ++ RFTRKLLVAV DGWDSR LKIEKVIPPTWKNKPAGRILELCIL
Sbjct: 301 --------------LILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 360

Query: 361 HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDK 410
           HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  A +K
Sbjct: 361 HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Clc02G25850 vs. NCBI nr
Match: TYK21741.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 505.0 bits (1299), Expect = 6.2e-139
Identity = 279/397 (70.28%), Postives = 297/397 (74.81%), Query Frame = 0


Query: 36  PPHSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQ------------------ 95
           PP+ L    FSTSFSTL S K S F     DIGL DS  A Q                  
Sbjct: 4   PPNPL----FSTSFSTLHSFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFA 63

Query: 96  PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASL 155
           PG SA KT LFT GDKV T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASL
Sbjct: 64  PGASAHKTRLFTVGDKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASL 123

Query: 156 RASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPV 215
           RASTSF EN VAEER+SI+VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPV
Sbjct: 124 RASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPV 183

Query: 216 RLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNE 275
           RLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DST     
Sbjct: 184 RLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDST----- 243

Query: 276 RIKRTTSSKAPNVIWINAEGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAV 335
            I+    +  P +++                                ++ RFTRKLLVAV
Sbjct: 244 -IEAEILAAPPKMVYSK------------------------------LILRFTRKLLVAV 303

Query: 336 VDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR 395
           VDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR
Sbjct: 304 VDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR 357

Query: 396 FCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 415
           FCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 364 FCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 357

[Close]

BLAST of Clc02G25850 vs. NCBI nr
Match: KAA0040119.1 (NusB/RsmB/TIM44 [Cucumis melo var. makuwa])

HSP 1 Score: 492.3 bits (1266), Expect = 4.2e-135
Identity = 305/548 (55.66%), Postives = 322/548 (58.76%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQ 60
           MSLAPPTS Y       P PKS    HLSS TQ   SHP LFP   LFHLSFSTSFSTL 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKS----HLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           S K S F     DIGL DS  A Q                  PG SA KT LF  GDKV 
Sbjct: 61  SFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVI 120

Query: 121 TIR--------------------------------------------------------- 180
           T R                                                         
Sbjct: 121 TTRFFFLCPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLS 180

Query: 181 ----------------------------------------------------PNFHFSYH 240
                                                               PNFHFS H
Sbjct: 181 SLKFGYTRWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNH 240

Query: 241 ISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKV 300
           ISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSSIETIPK+
Sbjct: 241 ISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKI 300

Query: 301 DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMS 360
           DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMS
Sbjct: 301 DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMS 360

Query: 361 FGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPRSPTK 415
           FGGPPVTVET+EEADELLRKDE+DST      I+    +  P +++              
Sbjct: 361 FGGPPVTVETIEEADELLRKDERDST------IEAEILAAPPKMVYSK------------ 420

[Close]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot
Match: Q18B61 (Transcription antitermination protein NusB OS=Clostridioides difficile (strain 630) OX=272563 GN=nusB PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 0


Query: 327 KIEKVIPPTWKNKPAGRI--LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAP 386
           KI+++I    KN    R+  +++ IL L++ EI  + T +++ INEAV+LAK +CD  +P
Sbjct: 94  KIDELINKHAKNWTVDRMPKVDVSILRLSVCEILYLDTPNKVSINEAVELAKIYCDDKSP 153

Query: 387 RIINGCLRTFVKDI 399
           + ING L + V +I
Sbjct: 154 KFINGILGSVVDEI 167

[Close]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot
Match: A7GWZ7 (Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.92) OX=360105 GN=nusB PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 2.5e-05
Identity = 29/82 (35.37%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 315 VAVVDGWDSRVLK---IEKVIPPTWKNKPAGR--ILELCILHLAMSEITVIGTRHQIVIN 374
           +  ++ +D+  LK   +++++ P  K K   R  I+EL IL L + E+   GT   ++IN
Sbjct: 43  IQALETFDAICLKKGELDEILKPYLKEKDIERIGIVELAILRLGVYEMKFTGTDKAVIIN 102

Query: 375 EAVDLAKRFCDGAAPRIINGCL 392
           EA++LAK     +AP+ ING L
Sbjct: 103 EAIELAKELGGDSAPKFINGVL 124

[Close]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot
Match: B1WXY6 (Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain ATCC 51142 / BH68) OX=43989 GN=nusB PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 7.2e-05
Identity = 28/64 (43.75%), Postives = 38/64 (59.38%), Query Frame = 0


Query: 336 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 395
           W+ K   +I +  IL LA++EI  +    ++ INEAV+LAKR+ D    R ING LR F 
Sbjct: 145 WQLKRLAKI-DQDILRLAVAEILFLDVPEKVSINEAVELAKRYSDDDGYRFINGVLRRFT 204

Query: 396 KDIK 400
             IK
Sbjct: 205 DHIK 207

[Close]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot
Match: A6QBK6 (Transcription antitermination protein NusB OS=Sulfurovum sp. (strain NBC37-1) OX=387093 GN=nusB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-04
Identity = 31/83 (37.35%), Postives = 42/83 (50.60%), Query Frame = 0


Query: 309 FTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVI 368
           F+  L    ++  +    +IEK +   W     GR+ E  IL L   EI V  T   I+I
Sbjct: 45  FSHDLFDGTIENLEMLDAEIEKHL-TDWDYDAIGRV-EKAILRLGAYEILVAKTDRAIII 104

Query: 369 NEAVDLAKRFCDGAAPRIINGCL 392
           NEAV+LAK   D  +P+ ING L
Sbjct: 105 NEAVELAKSLADEKSPQFINGVL 125

[Close]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot
Match: Q8GIR7 (Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=nusB PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 2.1e-04
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 345 LELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLR 393
           L+  IL LA +EI  +GT  Q+ INEAV+LA R+ D    R ING LR
Sbjct: 149 LDQDILRLAAAEILFLGTPEQVAINEAVELANRYSDEEGRRFINGVLR 196

[Close]

BLAST of Clc02G25850 vs. ExPASy TrEMBL
Match: A0A1S3BNR2 (uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 538.5 bits (1386), Expect = 2.5e-149
Identity = 305/439 (69.48%), Postives = 322/439 (73.35%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQ 60
           MSLAPPTS Y       P PKS    HLSS TQ   SHP LFP   LFHLSFSTSFSTL 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKS----HLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           S K S F     DIGL DS  A Q                  PG SA KT LF  GDKV 
Sbjct: 61  SFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVI 120

Query: 121 TIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSI 180
           T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI
Sbjct: 121 TTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSI 180

Query: 181 AVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFD 240
           +VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFD
Sbjct: 181 SVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFD 240

Query: 241 KTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINA 300
           KTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DST      I+    +  P +++   
Sbjct: 241 KTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDST------IEAEILAAPPKMVYSK- 300

Query: 301 EGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPT 360
                                        ++ RFTRKLLVAVVDGWD+R LKIEKVIPPT
Sbjct: 301 -----------------------------LILRFTRKLLVAVVDGWDNRALKIEKVIPPT 360

Query: 361 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 415
           WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV
Sbjct: 361 WKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFV 394

[Close]

BLAST of Clc02G25850 vs. ExPASy TrEMBL
Match: A0A0A0KWZ5 (NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 2.7e-148
Identity = 299/419 (71.36%), Postives = 316/419 (75.42%), Query Frame = 0


Query: 1   MSLAPPTSPYPFPKSCLP---NHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQSLKP 60
           MSLAPPTS YP+     P   +HLSS TQ   SHP  F     FHLSFSTSFSTL SLK 
Sbjct: 1   MSLAPPTSLYPYSSHSHPLPKSHLSSFTQ--RSHPNFFSLCFPFHLSFSTSFSTLHSLKY 60

Query: 61  SPFIARASDIGLRDSVHADQ-------PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGI 120
           S F    +D GL DS  ADQ       PG SA KT LFT GDKV T RPNFHFSYHISGI
Sbjct: 61  SAF---KTDTGLGDSHDADQPHSLKFAPGASAHKTRLFTVGDKVITTRPNFHFSYHISGI 120

Query: 121 CRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKVDKSG 180
           C+FPF ASSIVPH KD MP  C QASLRASTSFSEN VAEER+SI++SSIE IPKVDKSG
Sbjct: 121 CQFPFHASSIVPHIKDSMPRFCCQASLRASTSFSENRVAEERSSISISSIEMIPKVDKSG 180

Query: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240
           KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP
Sbjct: 181 KFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMSFGGP 240

Query: 241 PVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPRSPTKDGLQ 300
           PVTVET+EEADELLRKDE+DST      I+    +  P +++                  
Sbjct: 241 PVTVETIEEADELLRKDERDST------IEAEILAAPPKIVYSK---------------- 300

Query: 301 QTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAGRILELCIL 360
                         ++ RFTRKLLVAV DGWDSR LKIEKVIPPTWKNKPAGRILELCIL
Sbjct: 301 --------------LILRFTRKLLVAVGDGWDSRALKIEKVIPPTWKNKPAGRILELCIL 360

Query: 361 HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSTHAGDK 410
           HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDS  A +K
Sbjct: 361 HLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEIDSMPAREK 378

[Close]

BLAST of Clc02G25850 vs. ExPASy TrEMBL
Match: A0A5D3DDJ4 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G001130 PE=3 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 3.0e-139
Identity = 279/397 (70.28%), Postives = 297/397 (74.81%), Query Frame = 0


Query: 36  PPHSLFHLSFSTSFSTLQSLKPSPFIARASDIGLRDSVHADQ------------------ 95
           PP+ L    FSTSFSTL S K S F     DIGL DS  A Q                  
Sbjct: 4   PPNPL----FSTSFSTLHSFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFA 63

Query: 96  PGDSADKTGLFTHGDKVTTIRPNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASL 155
           PG SA KT LFT GDKV T RPNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASL
Sbjct: 64  PGASAHKTRLFTVGDKVITTRPNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASL 123

Query: 156 RASTSFSENCVAEERNSIAVSSIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPV 215
           RASTSF EN VAEER+SI+VSSIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPV
Sbjct: 124 RASTSFPENRVAEERSSISVSSIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPV 183

Query: 216 RLFEKRLNARRESGYEFDKTSLMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNE 275
           RLFEKRLN+RRESGYEFDKTSLMEYNHMSFGGPPVTVET+EEADELLRKDE+DST     
Sbjct: 184 RLFEKRLNSRRESGYEFDKTSLMEYNHMSFGGPPVTVETIEEADELLRKDERDST----- 243

Query: 276 RIKRTTSSKAPNVIWINAEGGRNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAV 335
            I+    +  P +++                                ++ RFTRKLLVAV
Sbjct: 244 -IEAEILAAPPKMVYSK------------------------------LILRFTRKLLVAV 303

Query: 336 VDGWDSRVLKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR 395
           VDGWD+R LKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR
Sbjct: 304 VDGWDNRALKIEKVIPPTWKNKPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKR 357

Query: 396 FCDGAAPRIINGCLRTFVKDIKEIDSTHAGDKQEVRA 415
           FCDGAAPRIINGCLRTFVKDIKE DST A +KQEVRA
Sbjct: 364 FCDGAAPRIINGCLRTFVKDIKETDSTPAREKQEVRA 357

[Close]

BLAST of Clc02G25850 vs. ExPASy TrEMBL
Match: A0A5A7TFT7 (NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00940 PE=3 SV=1)

HSP 1 Score: 492.3 bits (1266), Expect = 2.0e-135
Identity = 305/548 (55.66%), Postives = 322/548 (58.76%), Query Frame = 0


Query: 1   MSLAPPTSPY-------PFPKSCLPNHLSSSTQSSSSHPKLFPPHSLFHLSFSTSFSTLQ 60
           MSLAPPTS Y       P PKS    HLSS TQ   SHP LFP   LFHLSFSTSFSTL 
Sbjct: 1   MSLAPPTSLYLYSSHSHPLPKS----HLSSFTQ--RSHPNLFPVRFLFHLSFSTSFSTLH 60

Query: 61  SLKPSPFIARASDIGLRDSVHADQ------------------PGDSADKTGLFTHGDKVT 120
           S K S F     DIGL DS  A Q                  PG SA KT LF  GDKV 
Sbjct: 61  SFKSSAF---KIDIGLGDSHDAGQPREQYQVEQEQPHGLKFAPGASAHKTRLFNVGDKVI 120

Query: 121 TIR--------------------------------------------------------- 180
           T R                                                         
Sbjct: 121 TTRFFFLCPSTYSVLILYLLPLSFFNSNSASLILLTMQGMVDAGSVVTFALKISFGSFLS 180

Query: 181 ----------------------------------------------------PNFHFSYH 240
                                                               PNFHFS H
Sbjct: 181 SLKFGYTRWHLDEHRDNTTTILYWSTLGVAPELNRLKSLRADWGEELGGVELPNFHFSNH 240

Query: 241 ISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVSSIETIPKV 300
           ISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VSSIETIPK+
Sbjct: 241 ISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVSSIETIPKI 300

Query: 301 DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEYNHMS 360
           DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTSLMEYNHMS
Sbjct: 301 DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTSLMEYNHMS 360

Query: 361 FGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPRSPTK 415
           FGGPPVTVET+EEADELLRKDE+DST      I+    +  P +++              
Sbjct: 361 FGGPPVTVETIEEADELLRKDERDST------IEAEILAAPPKMVYSK------------ 420

[Close]

BLAST of Clc02G25850 vs. ExPASy TrEMBL
Match: A0A1S4DXQ5 (uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491638 PE=3 SV=1)

HSP 1 Score: 463.8 bits (1192), Expect = 7.7e-127
Identity = 241/316 (76.27%), Postives = 258/316 (81.65%), Query Frame = 0


Query: 99  PNFHFSYHISGICRFPFRASSIVPHAKDPMPHLCPQASLRASTSFSENCVAEERNSIAVS 158
           PNFHFS HISGIC+FPF ASSIVPH K+ MP LC QASLRASTSF EN VAEER+SI+VS
Sbjct: 15  PNFHFSNHISGICQFPFHASSIVPHVKNSMPRLCCQASLRASTSFPENRVAEERSSISVS 74

Query: 159 SIETIPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTS 218
           SIETIPK+DKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLN+RRESGYEFDKTS
Sbjct: 75  SIETIPKIDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNSRRESGYEFDKTS 134

Query: 219 LMEYNHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGG 278
           LMEYNHMSFGGPPVTVET+EEADELLRKDE+DST      I+    +  P +++      
Sbjct: 135 LMEYNHMSFGGPPVTVETIEEADELLRKDERDST------IEAEILAAPPKMVYSK---- 194

Query: 279 RNPRSPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKN 338
                                     ++ RFTRKLLVAVVDGWD+R LKIEKVIPPTWKN
Sbjct: 195 --------------------------LILRFTRKLLVAVVDGWDNRALKIEKVIPPTWKN 254

Query: 339 KPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI 398
           KPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI
Sbjct: 255 KPAGRILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDI 294

Query: 399 KEIDSTHAGDKQEVRA 415
           KE DST A +KQEVRA
Sbjct: 315 KETDSTPAREKQEVRA 294

[Close]

BLAST of Clc02G25850 vs. TAIR 10
Match: AT4G26370.1 (antitermination NusB domain-containing protein )

HSP 1 Score: 279.6 bits (714), Expect = 4.0e-75
Identity = 149/251 (59.36%), Postives = 174/251 (69.32%), Query Frame = 0


Query: 163 IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEY 222
           +PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 223 NHMSFGGPPVTVETVEEADELLRKDEKDSTIVSNERIKRTTSSKAPNVIWINAEGGRNPR 282
           NHMSFGGPPV  ET EE DEL+R DEK+S      +I+    S  P +++          
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKES------KIEAEVLSAPPKLVYSK-------- 204

Query: 283 SPTKDGLQQTDLTDEIRSAIVFMVFRFTRKLLVAVVDGWDSRVLKIEKVIPPTWKNKPAG 342
                                 +V RF +KLL AVVD WDS V+ IEK+ PP WK+ PAG
Sbjct: 205 ----------------------LVLRFAKKLLAAVVDKWDSHVVIIEKISPPDWKSAPAG 264

Query: 343 RILELCILHLAMSEITVIGTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFVKDIKEID 402
           RILE  ILHLAMSE+ V+ TRH IVINEAVDLAKRFCDG+APRIINGCLRTFVKD     
Sbjct: 265 RILEFSILHLAMSEVAVLETRHPIVINEAVDLAKRFCDGSAPRIINGCLRTFVKDRATTS 299

Query: 403 STHAGD-KQEV 413
           +  A + KQEV
Sbjct: 325 TPQALELKQEV 299

[Close]

BLAST of Clc02G25850 vs. TAIR 10
Match: AT4G26370.2 (antitermination NusB domain-containing protein )

HSP 1 Score: 150.2 bits (378), Expect = 3.6e-36
Identity = 71/91 (78.02%), Postives = 81/91 (89.01%), Query Frame = 0


Query: 163 IPKVDKSGKFCSPRAARELALSIVYAACLEGSDPVRLFEKRLNARRESGYEFDKTSLMEY 222
           +PK+DKSG+  SPRAARELAL I+YAACLEGSDP+RLFEKR+NARRE GYEFDK+SL+EY
Sbjct: 85  MPKIDKSGRLSSPRAARELALVILYAACLEGSDPIRLFEKRINARREPGYEFDKSSLLEY 144

Query: 223 NHMSFGGPPVTVETVEEADELLRKDEKDSTI 254
           NHMSFGGPPV  ET EE DEL+R DEK+S I
Sbjct: 145 NHMSFGGPPVKTETKEEEDELVRHDEKESKI 175

The following BLAST results are available for this feature:

BLAST of Clc02G25850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901769.1	2.5e-156	70.84	uncharacterized protein LOC120088495 isoform X1 [Benincasa hispida]	[more]
XP_008449897.1	5.1e-149	69.48	PREDICTED: uncharacterized protein LOC103491638 isoform X1 [Cucumis melo]	[more]
XP_004149639.3	5.6e-148	71.36	uncharacterized protein LOC101216754 isoform X1 [Cucumis sativus] >XP_031739815....	[more]
TYK21741.1	6.2e-139	70.28	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]
KAA0040119.1	4.2e-135	55.66	NusB/RsmB/TIM44 [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G25850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q18B61	3.8e-06	39.19	Transcription antitermination protein NusB OS=Clostridioides difficile (strain 6...	[more]
A7GWZ7	2.5e-05	35.37	Transcription antitermination protein NusB OS=Campylobacter curvus (strain 525.9...	[more]
B1WXY6	7.2e-05	43.75	Transcription antitermination protein NusB OS=Crocosphaera subtropica (strain AT...	[more]
A6QBK6	2.1e-04	37.35	Transcription antitermination protein NusB OS=Sulfurovum sp. (strain NBC37-1) OX...	[more]
Q8GIR7	2.1e-04	52.08	Transcription antitermination protein NusB OS=Synechococcus elongatus (strain PC...	[more]

BLAST of Clc02G25850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BNR2	2.5e-149	69.48	uncharacterized protein LOC103491638 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0KWZ5	2.7e-148	71.36	NusB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G268020 PE=3 S...	[more]
A0A5D3DDJ4	3.0e-139	70.28	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G0011...	[more]
A0A5A7TFT7	2.0e-135	55.66	NusB/RsmB/TIM44 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G0094...	[more]
A0A1S4DXQ5	7.7e-127	76.27	uncharacterized protein LOC103491638 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Clc02G25850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26370.1	4.0e-75	59.36	antitermination NusB domain-containing protein	[more]
AT4G26370.2	3.6e-36	78.02	antitermination NusB domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006027	NusB/RsmB/TIM44	PFAM	PF01029	NusB	coord: 311..396 e-value: 4.0E-11 score: 43.3
IPR035926	NusB-like superfamily	GENE3D	1.10.940.10		coord: 172..401 e-value: 2.1E-16 score: 62.2
IPR035926	NusB-like superfamily	SUPERFAMILY	48013	NusB-like	coord: 308..398
IPR011605	NusB antitermination factor	PANTHER	PTHR11078	N UTILIZATION SUBSTANCE PROTEIN B-RELATED	coord: 306..406 coord: 44..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G25850.2	Clc02G25850.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0031564	transcription antitermination
biological_process	GO:0006353	DNA-templated transcription, termination
molecular_function	GO:0003723	RNA binding