Clc02G25590 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G25590
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Non-structural maintenance of chromosomes element 1 homolog
Location	ClcChr02: 37202600 .. 37207113 (+)
RNA-Seq Expression	Clc02G25590
Synteny	Clc02G25590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTCTGGATGATAGTTTTTATTGGTAAAACTTCAACTTTCCTTAGACTAATCTAAAAAATGAAATTTAATCACTGCCACTGGGCGCGAGTTTATAGAGAGGGAGGGGGCGGTATTTCCCGCGTTTTGAACTCGTATTTCCTTCGGGAAACTTCACTCCCGGGTGAGTCTCACAAATTTCTTCCCCCACAAACTCTTCTCTTCTCTTCTCTTCTCTTCTATATTTTTGGTCTATAGAATCATCATTGTCTGAATGTTTTGAAGTATTAGTTCTCTCTGAATTAGGGTTCACAATGCCAGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTACTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTCGGTGTTTACGCGAATCACTGGAAATACTCCAGGTTTCATTTTTCTTTCTTGTTTTTTTTTCTCTCTCTCATTGCTCTGTTTGGTATTTAAGTTGGGCAGTCATGATTTAGGGCTACGGAATCCTGCTCCATTTCGCTAATAAACGATGCAGCATGTGTTTCTTGGATCATTTATAACAGATGAATTTGAATTCCAATAAATTTCTTTGCAAATACTACATAATAGTTGCAGTGGAATGGTAATGCCAATTGAACCACTTATTGGAAGAAATTTAATCTGGTTTCGTATCCGTGTACGTGTTGGAATTGTTTGTCCTATTCGGAGGTTGCTCCAGATAAAATATATTGTTTTGGCTTTTGAAAGGTTATAAATTAATCAACACTCTCATAGACCTTACTCTATCCTTAATCAATAGCATCAACCACTGAAAAAGAATAGCATCTTTACTTGATAATTTTTCTGGGAAGCAATATACTCGTATTGGATGATCGTTGAAAACTTACATATGTTCAATGTTTATTTCGGTGCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGACCATTAATAAAGCACTCTCTTTTGCTCAGTTTGAGTTGAGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCTGACGAGCAATCCAAGTTGGGAACAAAGTATTCAGTTCCACAGATTGCATTTTATAAAGCCATTGTGAGGTTCTTCAACCTTTTCTTTCTTATTTACTGTTCATAGTTTGAATACCGATCAGTTATCTGTTACATAAAGATCCTGAAGTTGTCATCCCTGTTATTCTTATTGGATTGGTTGTGAATATATGTTAGTAGAACAAAAAAAGAAAAAAAATGTATGTTAGTAGAACAAACATGAGATTCCAAAAGACGTGGAAAAGTGAACCTCCCCATTAGCCAAAGAACTGCAAACAACTCTCTATTGACTGTTCGACTGTCGATAGAAGAACGGCTATAAAGCAGTTAAAGAGAGTACACAATTTATATACTGGATAGATAATTCGATCAATAGTTTGTCGCAGAGTATAGGAGGCTTCCTCATAGGTTCGTCGCGCATTTCCAACCTAATAGCCAAGAAGATTGCACCCTCTAAGAGCCTCCAAAATATAATCATCTTACCGATGAATGCATTCCAAATGAGCAGTGGAGAGATGCCTTCTAAATTCTGATCATCTTGGGGTCATATTGTTCGAAATATGTTATGAGTGTCTCATCTCTGATAATGATGTTTTATTGTAATCTCAAGTACTTGTTGATTTCCATACTTGGTTATAAGTTGTTTTAAACATTCCCACTTAGCTGACAACTGATTTGCGAACTCTCTGAGAATTCTGAGAGAGCAATGGGGTGTAGCTGCATTAGAAATTTGATTGTTAACCACATAAGGTTTGTAATGGTGGCTTTAACGGCTTAGGTTTATGCTGCATCGTTTATTGAATTATCAACAGTGGGAAGTATTGGAGTCCACAACACACTGACCCTTCAGCTAATTTGCTCAACAGTCAATGATGGGAACTTAGTGTTTAGATTTTACATGCATCTTTCTTTTGGTTGTCGCCATAGTAGTTGTTGAAAACAAAAGGAATTGCTTTGTTAGGTTGAAGCAATTGCGCAAGATCCATCTGCTCAAGGTGGAATATCCAACATTTCTGCTCTTAATCTGCAGTTGGAAAATCAGGTTTGTCTTTGACCAATACTATCGCTTTGTCTAGCCCATTCTACTGAAGTGTGATGCCTGAATTCTTCTGAGTCCATTATTGTCAAAGTCAGCTCCATATTTAACTGAACTTGGCTTCTATGGTCTTTTGCCTTATTGATATAACATTCTGTGGACAGGAACATTTTTCACATTTGTCATGTTTCTTGGTGGGAAGATTTCATTGGAATGAGTTCCACAAGAGTATCAACTCATATTTAGATCATATCATTTATAGATTCTTGAATTATGATTTTATGCTAGCGGCATTCTTCTTAAATTTAGATATTGAGAATGAAGTTTCAAGAGTTTTCTACATGGTAAAGGCTCATATCTCATCAATCAAATTTGGATATTGGAACTGTTAGTCTGACAGTGGTATGAATGACTTAAGTAATTATTGATGCATTCAATTCTTTGCGGCCACTTGAATTAATTTTGCTGTGGAGTCACTCTCAAATTTGTTGCTTTGACTTCTTTCTTTTCCAATACCTGAATTTTTATATCTGTTAAATTTCAAACCAAGAGTTCAAGCCCACTCTACAATTCTTCACGATTTGGTTGCAAGGCTTTTGATTTGCCAAATGTCTCTATTGTGGGTAAAGTTGAAAACAGAACTGACAAAAGTTTCCAGCTCCTTGTAATTTTATCAATGTTTGCAAATATCTGCTTCTTCACATATTTAAGGATCCTATTGTATAATATTCGTGTGCATTGTTTGACTATTACTGTTTTTATCTGCCAGCTGGGGGATCCAGGGTCCCGGTCCCAAGTCACACCACCTGCTTTCAAGAATTTCTCGATATCTCTCAAGGAAAAAACAATTTCCGAGCTTGCGCAGGATAAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCAGTAATGATGTACCTTCATGTGAAGTGTGCAATGAAGCTGGTGTGAAGGTTCTCTTATTGATTGGAAGCCTCTTTTTTCCCTTTTTTGTGTGGGCTCTATTTTTATGCTCCTGTATTCTCTCAATCGATAATTCTCTCAATCTTTATCGATGAAAGTTCAGTTTCACATTTAAATAAGAAAAAAAAGAGAGAGAAAATTCACTTGTTTTATGTCATTTTATGATTTACAGAGTCAATCATCATTTTATCTCAAATTTTTATGCTGCATTGTTTTACCCAATGCTCACACTGATGGGAGAACCTAAATATTTGATGGGTTTTTCCTTTTTTCTTTTTTTTTTTATTTTTTTATTTTTCCAACTGGCCAACTGGGTCTAGGTTACGGAGTCGATTATCATTTTATCTCAAATTTGTATGCTGCATTATTTTATCCGATGTCTCCATTGATAGAAGAAGCTAAGCTCCATATAGTTTTGTATCGTAGAGAACTGTAAGAAAACTTATCTCCTTAATGATTTATATCTTTGGTGGACTTGTCACTCACAGGCAGAGTTGTGTAATAGTGAAGGTTGCACTGTCCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGGTAATATGAAGTGGTATCCTCCTATTTTAAATTTTTAATCAGTAAGATCTCTTGGGCCTAACAGTTCTTTAATTGACTGTTATTAGAGTAAAAGGGCCTGCCCAGGTTGTGGCACTCGTTGGCGATCTACAACATCCAATATGGAGTCCAGGGAGGAAGAGAACGAGCCAGATACGCGCAATCAAGATCAACCATCATCAAATAGGAGGAAGAAATCCAGGTTGAGCATAGATATTGATTTAGAACCAAATGAAGACAGTACGGCAGAAGCTTCCCAACCTCCTCCAGATTCAAGGAGGGCAACGCGAAGTTCTGCACGGCAGTGGTAGGTCTTGGAATGATATACTGTTATTTTATTATAGTTTCATGGATTCTATTATTAGTTTAGGAGTTGTAAAGTGTGCAGCAACTGCACTTTTTGATGTCATGTGTCAAAATTGTCACCCTATTTAGATTTAGTTGAAGGGTCTTACTGAAGTCTTCATACCCAGAACCGAAATGTAAAGTGCATCACACTATGTAAGCCAGAAGTAAAAAGTTTCTTTTACCTCTCGTAGACTGTAGCTGTGGTTCTCCTTTCTTGTCTATAAACGCAAGGAATACCTGCAGTTACATTGTAAGTATTCAATTTTTTTGTGCCTAAGATAGTTTGATTATGTTGAACAGAATTACTATAGGATCGTCCCTTCAAAGAATAGAGTATAAATAGGTATCATCCCAAACAACCTATACTGTAGCCTCTTTATTAAACAGTAATTATGCTTTTGAATGACGTTATGTGGAATAGTGAAAAAGTATATATATAATGGATTCTGGATTGTGTAAAGATATGCAGTTCAATGCTTAAAA

mRNA sequence

AGTCTGGATGATAGTTTTTATTGGTAAAACTTCAACTTTCCTTAGACTAATCTAAAAAATGAAATTTAATCACTGCCACTGGGCGCGAGTTTATAGAGAGGGAGGGGGCGGTATTTCCCGCGTTTTGAACTCGTATTTCCTTCGGGAAACTTCACTCCCGGGGTTCACAATGCCAGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTACTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTCGGTGTTTACGCGAATCACTGGAAATACTCCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGACCATTAATAAAGCACTCTCTTTTGCTCAGTTTGAGTTGAGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCTGACGAGCAATCCAAGTTGGGAACAAAGTATTCAGTTCCACAGATTGCATTTTATAAAGCCATTGTTGAAGCAATTGCGCAAGATCCATCTGCTCAAGGTGGAATATCCAACATTTCTGCTCTTAATCTGCAGTTGGAAAATCAGCTGGGGGATCCAGGGTCCCGGTCCCAAGTCACACCACCTGCTTTCAAGAATTTCTCGATATCTCTCAAGGAAAAAACAATTTCCGAGCTTGCGCAGGATAAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCAGTAATGATGTACCTTCATGTGAAGTGTGCAATGAAGCTGGTGTGAAGGCAGAGTTGTGTAATAGTGAAGGTTGCACTGTCCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCCTGCCCAGGTTGTGGCACTCGTTGGCGATCTACAACATCCAATATGGAGTCCAGGGAGGAAGAGAACGAGCCAGATACGCGCAATCAAGATCAACCATCATCAAATAGGAGGAAGAAATCCAGGTTGAGCATAGATATTGATTTAGAACCAAATGAAGACAGTACGGCAGAAGCTTCCCAACCTCCTCCAGATTCAAGGAGGGCAACGCGAAGTTCTGCACGGCAGTGGTAGGTCTTGGAATGATATACTGTTATTTTATTATAGTTTCATGGATTCTATTATTAGTTTAGGAGTTGTAAAGTGTGCAGCAACTGCACTTTTTGATGTCATGTGTCAAAATTGTCACCCTATTTAGATTTAGTTGAAGGGTCTTACTGAAGTCTTCATACCCAGAACCGAAATGTAAAGTGCATCACACTATGTAAGCCAGAAGTAAAAAGTTTCTTTTACCTCTCGTAGACTGTAGCTGTGGTTCTCCTTTCTTGTCTATAAACGCAAGGAATACCTGCAGTTACATTGTAAGTATTCAATTTTTTTGTGCCTAAGATAGTTTGATTATGTTGAACAGAATTACTATAGGATCGTCCCTTCAAAGAATAGAGTATAAATAGGTATCATCCCAAACAACCTATACTGTAGCCTCTTTATTAAACAGTAATTATGCTTTTGAATGACGTTATGTGGAATAGTGAAAAAGTATATATATAATGGATTCTGGATTGTGTAAAGATATGCAGTTCAATGCTTAAAA

Coding sequence (CDS)

ATGAAATTTAATCACTGCCACTGGGCGCGAGTTTATAGAGAGGGAGGGGGCGGTATTTCCCGCGTTTTGAACTCGTATTTCCTTCGGGAAACTTCACTCCCGGGGTTCACAATGCCAGAGCTGAGTTGGAGACATCACACTCTCATTCAAGCGCTACTCGCTCGCGGCCCACTCAGAGAGGATCACTTCCATTCGGTGTTTACGCGAATCACTGGAAATACTCCAGATAATGACCAGCAGCTTTTTAATAGTTACCTCCTGACCATTAATAAAGCACTCTCTTTTGCTCAGTTTGAGTTGAGAGGCTGCAGAAACCAATATGATGGTCGTGTTTACTATGGCTTGGTCAATAATGTATCTGACGAGCAATCCAAGTTGGGAACAAAGTATTCAGTTCCACAGATTGCATTTTATAAAGCCATTGTTGAAGCAATTGCGCAAGATCCATCTGCTCAAGGTGGAATATCCAACATTTCTGCTCTTAATCTGCAGTTGGAAAATCAGCTGGGGGATCCAGGGTCCCGGTCCCAAGTCACACCACCTGCTTTCAAGAATTTCTCGATATCTCTCAAGGAAAAAACAATTTCCGAGCTTGCGCAGGATAAGTGGCTTAATTGCACCCCTGATGGTTTTGTAAATTTGGGTGTCAGATCGTTTCTTGATTTGCGAAGTTGGTTCCGCAGTAATGATGTACCTTCATGTGAAGTGTGCAATGAAGCTGGTGTGAAGGCAGAGTTGTGTAATAGTGAAGGTTGCACTGTCCGTGTACATCGGTATTGCCTTAAGAAAATGTTATCCAATAAAAAGAGTAAAAGGGCCTGCCCAGGTTGTGGCACTCGTTGGCGATCTACAACATCCAATATGGAGTCCAGGGAGGAAGAGAACGAGCCAGATACGCGCAATCAAGATCAACCATCATCAAATAGGAGGAAGAAATCCAGGTTGAGCATAGATATTGATTTAGAACCAAATGAAGACAGTACGGCAGAAGCTTCCCAACCTCCTCCAGATTCAAGGAGGGCAACGCGAAGTTCTGCACGGCAGTGGTAG

Protein sequence

MKFNHCHWARVYREGGGGISRVLNSYFLRETSLPGFTMPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGVRSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPGCGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPPDSRRATRSSARQW

Homology

[Close]

BLAST of Clc02G25590 vs. NCBI nr
Match: XP_038900598.1 (non-structural maintenance of chromosomes element 1 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 561.2 bits (1445), Expect = 6.2e-156
Identity = 281/313 (89.78%), Postives = 294/313 (93.93%), Query Frame = 0


Query: 35  GFTMPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALS 94
           GF MPELSWRHHTLIQALLARGPLREDHFH +FTRITG TPDNDQQLFNSYLLTINKALS
Sbjct: 20  GFRMPELSWRHHTLIQALLARGPLREDHFHLLFTRITGKTPDNDQQLFNSYLLTINKALS 79

Query: 95  FAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGG 154
           FAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGG
Sbjct: 80  FAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGG 139

Query: 155 ISNISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNL 214
           ISNISALNLQLENQ+GD GS+SQV P AFKNFSISLKEKTI+ELAQDKWL+C+PDGFVNL
Sbjct: 140 ISNISALNLQLENQMGDTGSQSQVIPAAFKNFSISLKEKTIAELAQDKWLSCSPDGFVNL 199

Query: 215 GVRSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRAC 274
           GVRSFLDLRSWFRSNDVPSCEVCNEAGVKAELCN+E CTVRVHRYCLKKMLSNKKSKRAC
Sbjct: 200 GVRSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNTEDCTVRVHRYCLKKMLSNKKSKRAC 259

Query: 275 PGCGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQP 334
           PGCG +WRST SN+ESREEE+EPDT  QDQPSS++RKKSRL+IDIDL  NED  AEA QP
Sbjct: 260 PGCGIQWRSTASNIESREEEDEPDTHTQDQPSSHKRKKSRLNIDIDLGSNEDCMAEAFQP 319

Query: 335 PPDSRRATRSSAR 348
           P  SRRATR SAR
Sbjct: 320 PA-SRRATRRSAR 331

[Close]

BLAST of Clc02G25590 vs. NCBI nr
Match: XP_038900599.1 (non-structural maintenance of chromosomes element 1 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 557.0 bits (1434), Expect = 1.2e-154
Identity = 279/310 (90.00%), Postives = 292/310 (94.19%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           MPELSWRHHTLIQALLARGPLREDHFH +FTRITG TPDNDQQLFNSYLLTINKALSFAQ
Sbjct: 1   MPELSWRHHTLIQALLARGPLREDHFHLLFTRITGKTPDNDQQLFNSYLLTINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGVR 217
           ISALNLQLENQ+GD GS+SQV P AFKNFSISLKEKTI+ELAQDKWL+C+PDGFVNLGVR
Sbjct: 121 ISALNLQLENQMGDTGSQSQVIPAAFKNFSISLKEKTIAELAQDKWLSCSPDGFVNLGVR 180

Query: 218 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPGC 277
           SFLDLRSWFRSNDVPSCEVCNEAGVKAELCN+E CTVRVHRYCLKKMLSNKKSKRACPGC
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCNTEDCTVRVHRYCLKKMLSNKKSKRACPGC 240

Query: 278 GTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPPD 337
           G +WRST SN+ESREEE+EPDT  QDQPSS++RKKSRL+IDIDL  NED  AEA QPP  
Sbjct: 241 GIQWRSTASNIESREEEDEPDTHTQDQPSSHKRKKSRLNIDIDLGSNEDCMAEAFQPPA- 300

Query: 338 SRRATRSSAR 348
           SRRATR SAR
Sbjct: 301 SRRATRRSAR 309

[Close]

BLAST of Clc02G25590 vs. NCBI nr
Match: XP_008449859.1 (PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis melo])

HSP 1 Score: 554.7 bits (1428), Expect = 5.8e-154
Identity = 273/311 (87.78%), Postives = 295/311 (94.86%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           MPELSWRHHTLIQ+LL+RGPLRED FH +F RITG TPDNDQQ+FNSYLLTINKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKRITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIAF+KAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIAFFKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGVR 217
           ISALNLQLENQLGD G +SQV P AFKNFS S KEKTI+ELAQDKWL+CTP+GFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGPQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPEGFVNLGVR 180

Query: 218 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPGC 277
           SFLDLRSWFRSNDVPSCEVCNEAGVKAELC+SE CTVRVHRYCLKKMLSNKKSKRACPGC
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSSEVCTVRVHRYCLKKMLSNKKSKRACPGC 240

Query: 278 GTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPPD 337
           GTRW+ST SN+ES+EE +EPDTR QDQPSS++RKKS+L++DIDL PNEDSTAEASQPPPD
Sbjct: 241 GTRWQSTMSNIESKEEVDEPDTRTQDQPSSHKRKKSKLNVDIDLGPNEDSTAEASQPPPD 300

Query: 338 SRRATRSSARQ 349
           +RRATR+S RQ
Sbjct: 301 TRRATRNSTRQ 311

[Close]

BLAST of Clc02G25590 vs. NCBI nr
Match: XP_022153726.1 (non-structural maintenance of chromosomes element 1 homolog isoform X1 [Momordica charantia] >XP_022153727.1 non-structural maintenance of chromosomes element 1 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 536.2 bits (1380), Expect = 2.1e-148
Identity = 268/312 (85.90%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M ELSWRHHTLIQALLARGPLRED FH +FTRITG +PDNDQQLFN+YLL INKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSR-SQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
           I+AL+LQLENQLGD GS+ SQV PPAFKNFSISLKEKTI+ELAQD+WLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RSFLDLRSWFR+ND+PSCEVCNEAGVKAELC++EGCTVRVH+YCLKKMLSNKKSKRACPG
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 278 CGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPP 337
           CGT+WRST +NMES+EEE+EPD R Q Q SS RRKKSRL+ID+D + N    A ASQPPP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSN---GASASQPPP 300

Query: 338 DSRRATRSSARQ 349
           ++RR TRSSARQ
Sbjct: 301 ETRRVTRSSARQ 309

[Close]

BLAST of Clc02G25590 vs. NCBI nr
Match: XP_022153728.1 (non-structural maintenance of chromosomes element 1 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 536.2 bits (1380), Expect = 2.1e-148
Identity = 268/312 (85.90%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M ELSWRHHTLIQALLARGPLRED FH +FTRITG +PDNDQQLFN+YLL INKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSR-SQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
           I+AL+LQLENQLGD GS+ SQV PPAFKNFSISLKEKTI+ELAQD+WLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RSFLDLRSWFR+ND+PSCEVCNEAGVKAELC++EGCTVRVH+YCLKKMLSNKKSKRACPG
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 278 CGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPP 337
           CGT+WRST +NMES+EEE+EPD R Q Q SS RRKKSRL+ID+D + N    A ASQPPP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSN---GASASQPPP 300

Query: 338 DSRRATRSSARQ 349
           ++RR TRSSARQ
Sbjct: 301 ETRRVTRSSARQ 309

[Close]

BLAST of Clc02G25590 vs. ExPASy Swiss-Prot
Match: Q6PAF4 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX=8355 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-09
Identity = 65/281 (23.13%), Postives = 116/281 (41.28%), Query Frame = 0


Query: 45  HHTLIQALLARG-----PLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQFE 104
           H   +QAL++ G      +R  H H           D      + ++  +N+ L      
Sbjct: 9   HQRFLQALMSHGIMEGSAVRALHRHCCELHKVHYMHDK----LDDFVGVLNRHLQPLFMT 68

Query: 105 LRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISNIS 164
           +     + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G  ++IS
Sbjct: 69  IEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELIIL--SDNGFATSIS 128

Query: 165 ALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISEL----AQDKWLNCTPDGFVNLG 224
            LNL  E Q                  S  +K+K + +L     Q+KWL    +G   L 
Sbjct: 129 ILNLADELQ------------------SKKMKKKEVEQLLQSFVQEKWL-IGRNGEYTLH 188

Query: 225 VRSFLDLRSWFRS--NDVPS-CEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKR 284
            R  ++L  + R+   DV   C VC +  ++++LC  E C + +H  C  K   + K+  
Sbjct: 189 TRCIMELEHYIRNTYQDVAKICNVCRKVAIQSQLC--ENCGIPLHLQCAGKYF-HGKANP 248

Query: 285 ACPGCGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKS 314
            CP C   W     ++     +    ++ +     N+R K+
Sbjct: 249 TCPNCNESWPHEIPDLNQVSSQGPSHSQTETVRGRNQRSKN 261

[Close]

BLAST of Clc02G25590 vs. ExPASy Swiss-Prot
Match: Q6P881 (Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicalis OX=8364 GN=nsmce1 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.6e-08
Identity = 66/287 (23.00%), Postives = 118/287 (41.11%), Query Frame = 0


Query: 40  ELSWRHHTLIQALLARGPL-----REDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALS 99
           +++  H   +Q L++ G +     R  H H           DN     + ++  +NK L 
Sbjct: 4   QINESHQRFLQVLMSHGIMESSLVRALHRHCCEVHKVNYMHDN----LDDFVGVLNKHLQ 63

Query: 100 FAQFELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGG 159
               ++     + DG  YY LVN V ++ +K+ + Y+  ++  ++  +E I    S  G 
Sbjct: 64  PLFMKIEKGVGEEDGLTYYALVNRVENDITKMASDYAENELELFRKTMELII--ISENGF 123

Query: 160 ISNISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISEL----AQDKWLNCTPDG 219
              IS LNL  E Q                  S  +K+K + +L     QDKWL    +G
Sbjct: 124 APPISILNLADELQ------------------SKKMKKKEVEQLLQSFVQDKWL-IGRNG 183

Query: 220 FVNLGVRSFLDLRSWFRS--NDVPS-CEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSN 279
              L  R  ++L  +  +   DV   C VC++  ++ +LC  E C + +H  C   +   
Sbjct: 184 EYTLHTRCIMELEHYILNTYQDVAKICNVCHKIAIQCQLC--ENCGIPLHLQC-AGIYFR 243

Query: 280 KKSKRACPGCGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSR 315
             +   CP C   W     ++   +  ++  + +Q  P   R ++SR
Sbjct: 244 GIANPLCPNCKESWPHEIPDLS--QVSSQGPSHSQAAPVRGRNQRSR 260

[Close]

BLAST of Clc02G25590 vs. ExPASy TrEMBL
Match: A0A1S3BMD8 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucumis melo OX=3656 GN=LOC103491611 PE=3 SV=1)

HSP 1 Score: 554.7 bits (1428), Expect = 2.8e-154
Identity = 273/311 (87.78%), Postives = 295/311 (94.86%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           MPELSWRHHTLIQ+LL+RGPLRED FH +F RITG TPDNDQQ+FNSYLLTINKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKRITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIAF+KAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIAFFKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGVR 217
           ISALNLQLENQLGD G +SQV P AFKNFS S KEKTI+ELAQDKWL+CTP+GFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGPQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPEGFVNLGVR 180

Query: 218 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPGC 277
           SFLDLRSWFRSNDVPSCEVCNEAGVKAELC+SE CTVRVHRYCLKKMLSNKKSKRACPGC
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSSEVCTVRVHRYCLKKMLSNKKSKRACPGC 240

Query: 278 GTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPPD 337
           GTRW+ST SN+ES+EE +EPDTR QDQPSS++RKKS+L++DIDL PNEDSTAEASQPPPD
Sbjct: 241 GTRWQSTMSNIESKEEVDEPDTRTQDQPSSHKRKKSKLNVDIDLGPNEDSTAEASQPPPD 300

Query: 338 SRRATRSSARQ 349
           +RRATR+S RQ
Sbjct: 301 TRRATRNSTRQ 311

[Close]

BLAST of Clc02G25590 vs. ExPASy TrEMBL
Match: A0A0A0KZ19 (Non-structural maintenance of chromosomes element 1 homolog OS=Cucumis sativus OX=3659 GN=Csa_4G269750 PE=3 SV=1)

HSP 1 Score: 546.2 bits (1406), Expect = 9.9e-152
Identity = 271/311 (87.14%), Postives = 294/311 (94.53%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           MPELSWRHHTLIQ+LL+RGPLRED FH +F +ITG TPDNDQQ+FNSYLLTINKALSFAQ
Sbjct: 1   MPELSWRHHTLIQSLLSRGPLREDQFHLLFKQITGKTPDNDQQVFNSYLLTINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSD+QSKLGTKYSVPQIA +KAIVEAIAQD SAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDDQSKLGTKYSVPQIALFKAIVEAIAQDSSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSRSQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGVR 217
           ISALNLQLENQLGD GS+SQV P AFKNFS S KEKTI+ELAQDKWL+CTPDGFVNLGVR
Sbjct: 121 ISALNLQLENQLGDTGSQSQVIPAAFKNFSKSHKEKTIAELAQDKWLDCTPDGFVNLGVR 180

Query: 218 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPGC 277
           SFLDLRSWFRSNDVPSCEVCNEAGVKAELC++E CTVRVH+YCLKKMLSNKKSK+ACPGC
Sbjct: 181 SFLDLRSWFRSNDVPSCEVCNEAGVKAELCSTEVCTVRVHQYCLKKMLSNKKSKKACPGC 240

Query: 278 GTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPPD 337
           GTRW+STTSN+E +EEE+EPDTR QDQPSS++RKKSRL++DIDL PNEDSTAEASQPPP 
Sbjct: 241 GTRWQSTTSNIEPKEEEDEPDTRTQDQPSSHKRKKSRLNVDIDLGPNEDSTAEASQPPP- 300

Query: 338 SRRATRSSARQ 349
           +RR TRSSARQ
Sbjct: 301 TRRTTRSSARQ 310

[Close]

BLAST of Clc02G25590 vs. ExPASy TrEMBL
Match: A0A6J1DLJ6 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 1.0e-148
Identity = 268/312 (85.90%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M ELSWRHHTLIQALLARGPLRED FH +FTRITG +PDNDQQLFN+YLL INKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSR-SQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
           I+AL+LQLENQLGD GS+ SQV PPAFKNFSISLKEKTI+ELAQD+WLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RSFLDLRSWFR+ND+PSCEVCNEAGVKAELC++EGCTVRVH+YCLKKMLSNKKSKRACPG
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 278 CGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPP 337
           CGT+WRST +NMES+EEE+EPD R Q Q SS RRKKSRL+ID+D + N    A ASQPPP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSN---GASASQPPP 300

Query: 338 DSRRATRSSARQ 349
           ++RR TRSSARQ
Sbjct: 301 ETRRVTRSSARQ 309

[Close]

BLAST of Clc02G25590 vs. ExPASy TrEMBL
Match: A0A6J1DI86 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 1.0e-148
Identity = 268/312 (85.90%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M ELSWRHHTLIQALLARGPLRED FH +FTRITG +PDNDQQLFN+YLL INKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSR-SQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
           I+AL+LQLENQLGD GS+ SQV PPAFKNFSISLKEKTI+ELAQD+WLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RSFLDLRSWFR+ND+PSCEVCNEAGVKAELC++EGCTVRVH+YCLKKMLSNKKSKRACPG
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 278 CGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPP 337
           CGT+WRST +NMES+EEE+EPD R Q Q SS RRKKSRL+ID+D + N    A ASQPPP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSN---GASASQPPP 300

Query: 338 DSRRATRSSARQ 349
           ++RR TRSSARQ
Sbjct: 301 ETRRVTRSSARQ 309

[Close]

BLAST of Clc02G25590 vs. ExPASy TrEMBL
Match: A0A6J1DJY3 (Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charantia OX=3673 GN=LOC111021178 PE=3 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 1.0e-148
Identity = 268/312 (85.90%), Postives = 290/312 (92.95%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M ELSWRHHTLIQALLARGPLRED FH +FTRITG +PDNDQQLFN+YLL INKALSFAQ
Sbjct: 1   MRELSWRHHTLIQALLARGPLREDQFHLMFTRITGKSPDNDQQLFNNYLLAINKALSFAQ 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN
Sbjct: 61  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 120

Query: 158 ISALNLQLENQLGDPGSR-SQVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
           I+AL+LQLENQLGD GS+ SQV PPAFKNFSISLKEKTI+ELAQD+WLNCTPDGFVNLGV
Sbjct: 121 IAALHLQLENQLGDMGSQSSQVIPPAFKNFSISLKEKTIAELAQDQWLNCTPDGFVNLGV 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RSFLDLRSWFR+ND+PSCEVCNEAGVKAELC++EGCTVRVH+YCLKKMLSNKKSKRACPG
Sbjct: 181 RSFLDLRSWFRTNDIPSCEVCNEAGVKAELCDNEGCTVRVHQYCLKKMLSNKKSKRACPG 240

Query: 278 CGTRWRSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPPP 337
           CGT+WRST +NMES+EEE+EPD R Q Q SS RRKKSRL+ID+D + N    A ASQPPP
Sbjct: 241 CGTKWRSTVTNMESKEEEDEPDRRTQGQSSSQRRKKSRLNIDMDSDSN---GASASQPPP 300

Query: 338 DSRRATRSSARQ 349
           ++RR TRSSARQ
Sbjct: 301 ETRRVTRSSARQ 309

[Close]

BLAST of Clc02G25590 vs. TAIR 10
Match: AT5G21140.1 (embryo defective 1379 )

HSP 1 Score: 339.3 bits (869), Expect = 3.5e-93
Identity = 174/309 (56.31%), Postives = 224/309 (72.49%), Query Frame = 0


Query: 38  MPELSWRHHTLIQALLARGPLREDHFHSVFTRITGNTPDNDQQLFNSYLLTINKALSFAQ 97
           M  LSW+HHTLIQAL++RGPL+E  FHS+FT +TG  P   +++F+ YLL INK LS+  
Sbjct: 1   MASLSWKHHTLIQALISRGPLKEKEFHSIFTAVTGRNPVTVKKIFDKYLLEINKELSYVH 60

Query: 98  FELRGCRNQYDGRVYYGLVNNVSDEQSKLGTKYSVPQIAFYKAIVEAIAQDPSAQGGISN 157
           FEL+ CR+QYDG+V YG+VNNV+D+QSKLGTKYSVPQIAF+K I+EAIAQD +AQG IS+
Sbjct: 61  FELKACRDQYDGQVCYGVVNNVADDQSKLGTKYSVPQIAFFKGIIEAIAQDEAAQGCISS 120

Query: 158 ISALNLQLENQLGDPGSRS-QVTPPAFKNFSISLKEKTISELAQDKWLNCTPDGFVNLGV 217
             ALN++LENQ+    S S Q  PPAFKNFS++ KEKT+ EL +DKWL  T +  + LG+
Sbjct: 121 FDALNIRLENQISSEASSSQQQVPPAFKNFSMTQKEKTLDELVRDKWLCRTRERNIGLGI 180

Query: 218 RSFLDLRSWFRSNDVPSCEVCNEAGVKAELCNSEGCTVRVHRYCLKKMLSNKKSKRACPG 277
           RS LDLRSWFR+NDVPSCEVCNEAGVKA+LC +EGC VR+H+YCLKK+LS +  KR C G
Sbjct: 181 RSLLDLRSWFRNNDVPSCEVCNEAGVKADLCPTEGCPVRIHKYCLKKLLSQRDDKR-CSG 240

Query: 278 CGTRW-RSTTSNMESREEENEPDTRNQDQPSSNRRKKSRLSIDIDLEPNEDSTAEASQPP 337
           CG  W  S  +  E+ EE    +  ++ Q ++ + K+ R   D   E      + AS   
Sbjct: 241 CGKPWPLSKITKTEAAEEAMNDEEESETQATAPKAKRRRQQRD-STENGSSQASLASTSG 300

Query: 338 PDSRRATRS 345
            ++RR TRS
Sbjct: 301 ANTRRVTRS 307

The following BLAST results are available for this feature:

BLAST of Clc02G25590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900598.1	6.2e-156	89.78	non-structural maintenance of chromosomes element 1 homolog isoform X1 [Benincas...	[more]
XP_038900599.1	1.2e-154	90.00	non-structural maintenance of chromosomes element 1 homolog isoform X2 [Benincas...	[more]
XP_008449859.1	5.8e-154	87.78	PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Cucumis ...	[more]
XP_022153726.1	2.1e-148	85.90	non-structural maintenance of chromosomes element 1 homolog isoform X1 [Momordic...	[more]
XP_022153728.1	2.1e-148	85.90	non-structural maintenance of chromosomes element 1 homolog isoform X2 [Momordic...	[more]

BLAST of Clc02G25590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PAF4	1.1e-09	23.13	Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus laevis OX...	[more]
Q6P881	7.6e-08	23.00	Non-structural maintenance of chromosomes element 1 homolog OS=Xenopus tropicali...	[more]

BLAST of Clc02G25590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BMD8	2.8e-154	87.78	Non-structural maintenance of chromosomes element 1 homolog OS=Cucumis melo OX=3...	[more]
A0A0A0KZ19	9.9e-152	87.14	Non-structural maintenance of chromosomes element 1 homolog OS=Cucumis sativus O...	[more]
A0A6J1DLJ6	1.0e-148	85.90	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]
A0A6J1DI86	1.0e-148	85.90	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]
A0A6J1DJY3	1.0e-148	85.90	Non-structural maintenance of chromosomes element 1 homolog OS=Momordica charant...	[more]

BLAST of Clc02G25590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21140.1	3.5e-93	56.31	embryo defective 1379	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011513	Non-structural maintenance of chromosomes element 1	PFAM	PF07574	SMC_Nse1	coord: 45..222 e-value: 8.6E-44 score: 149.8
IPR011513	Non-structural maintenance of chromosomes element 1	PANTHER	PTHR20973	NON-SMC ELEMENT 1-RELATED	coord: 38..346
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 121..230 e-value: 6.7E-18 score: 66.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 232..292 e-value: 8.1E-11 score: 43.2
IPR014857	Zinc finger, RING-like	PFAM	PF08746	zf-RING-like	coord: 234..277 e-value: 1.7E-8 score: 34.6
IPR014857	Zinc finger, RING-like	CDD	cd16493	RING-CH-C4HC3_NSE1	coord: 233..279 e-value: 4.91529E-13 score: 60.9065
None	No IPR available	GENE3D	3.90.1150.220		coord: 42..118 e-value: 1.3E-13 score: 52.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 286..321
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 270..349
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 326..349
None	No IPR available	PANTHER	PTHR20973:SF1	BNAANNG27900D PROTEIN	coord: 38..346

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G25590.1	Clc02G25590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0006301	postreplication repair
biological_process	GO:0006281	DNA repair
cellular_component	GO:0005634	nucleus
cellular_component	GO:0030915	Smc5-Smc6 complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity