Clc02G25470 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G25470
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal protein L11
LocationClcChr02: 37140560 .. 37141491 (-)
RNA-Seq ExpressionClc02G25470
SyntenyClc02G25470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAAAAAGTTGCTTCATACGAACCGATTATATATATAAACATAAACCCTCTTTTCCCATTTCCCGAATCGCTTCCACAAGAAAAGGAAGTTCCGGCGAAGAGCTATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAATGTAATACCTAAATTTTTAGGGTTTTTCTCCTCTTGTTCTTCAGTATCTCGATCTAAATTGAGCGTTTTTGCAGTGACATTCTTCTTCTTACTGTGAATTAATGTTACTCTGTATGCTAAGTTGAATCAATTCCAACGATCTGTCATGAATTTCAAGGAAAGTGGGGCTGGGATAATAGCTAAATAGAAGTTATTGTTTATCATTAGAGTTTGCTATGGAACTATAGCCAGTTTGCAAGTCCTGAACTGGTTTCATTTTGATGAAGCAGTTAGTAATTAACTACCTCCAATTTAGTACTCTCTGGTGTAAAATCCTGAATTTGATTAACTTTGTGAAACTGTTTTTGTGGGTGTTCCGCG

mRNA sequence

GAAAAAAGTTGCTTCATACGAACCGATTATATATATAAACATAAACCCTCTTTTCCCATTTCCCGAATCGCTTCCACAAGAAAAGGAAGTTCCGGCGAAGAGCTATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAATGTAATACCTAAATTTTTAGGGTTTTTCTCCTCTTGTTCTTCAGTATCTCGATCTAAATTGAGCGTTTTTGCAGTGACATTCTTCTTCTTACTGTGAATTAATGTTACTCTGTATGCTAAGTTGAATCAATTCCAACGATCTGTCATGAATTTCAAGGAAAGTGGGGCTGGGATAATAGCTAAATAGAAGTTATTGTTTATCATTAGAGTTTGCTATGGAACTATAGCCAGTTTGCAAGTCCTGAACTGGTTTCATTTTGATGAAGCAGTTAGTAATTAACTACCTCCAATTTAGTACTCTCTGGTGTAAAATCCTGAATTTGATTAACTTTGTGAAACTGTTTTTGTGGGTGTTCCGCG

Coding sequence (CDS)

ATGGCCACCTTGAAAGAGATTCTAACCAGACGACCCGTGGCTGCCACCATCAGGCTCACCGTCCCTGCCGGTGGAGCTCGCCCTGCGCCACCGGTGGGTCCGGCGCTGGGTCAATACCGGTTGAATCTGATGGCCTTCTGCAAGGATTTCAATGCCCGGACTCAAAAGTACAAGGCCGACACACCCATGGCCGTCACCATTACGGCTTTCAAGGACAACACCTTCGAGTTCACCGTCAAGTCACCGTCAGTCACTTGGTATCTGAAGAAAGCTGCCGGGATCGAATCTGGGAGCAGCCGCCCGGGCCATGTAGTCGCCACCACGCTCTCCGTCAAGCACATTTATGAGATCGCCAAAGTCAAGCAGTCCGATCCTTATTGCCAGTACATGCCACTCGAATCCATTTGTAAGTCCATTATCGGCACTGCCAATAGCATGGGAATTAAGGTTGTTAAGGAATTGGAGTAA

Protein sequence

MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE
Homology
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BLAST of Clc02G25470 vs. NCBI nr
Match: XP_038901904.1 (54S ribosomal protein L19, mitochondrial [Benincasa hispida])

HSP 1 Score: 305.8 bits (782), Expect = 2.1e-79
Identity = 153/155 (98.71%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 155

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BLAST of Clc02G25470 vs. NCBI nr
Match: KAG7034038.1 (mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.4 bits (773), Expect = 2.3e-78
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TL+VKHIY+IAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLTVKHIYDIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

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BLAST of Clc02G25470 vs. NCBI nr
Match: XP_023003939.1 (54S ribosomal protein L19, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 302.0 bits (772), Expect = 3.0e-78
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIESGSSRPGHVVA+TLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANS GIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSTGIKVVKELD 155

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BLAST of Clc02G25470 vs. NCBI nr
Match: XP_008449842.1 (PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1 54S ribosomal protein L19 [Cucumis melo var. makuwa] >TYK21704.1 54S ribosomal protein L19 [Cucumis melo var. makuwa])

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Clc02G25470 vs. NCBI nr
Match: XP_022132985.1 (54S ribosomal protein L19, mitochondrial [Momordica charantia])

HSP 1 Score: 301.2 bits (770), Expect = 5.1e-78
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVA+TLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

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BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match: Q9UTK2 (54S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=mrpl19 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.3e-33
Identity = 70/135 (51.85%), Postives = 90/135 (66.67%), Query Frame = 0 

Query: 17  IRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAFKDNTFE 76
           I+L VPAG A P PP+GPALG   L  + FCK+FNART  +  +TP+   IT     TF 
Sbjct: 9   IKLIVPAGKATPTPPIGPALGARGLKSIDFCKEFNARTAGWMPNTPVPCKITVTPQRTFT 68

Query: 77  FTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMPLESIC 136
           FT+ +P  +W + K   +E GSS P H +   LS+KHIYEIAK+K +DP  Q + L S+C
Sbjct: 69  FTIHTPPTSWLISKTLDLEKGSSSPLHDIKGQLSLKHIYEIAKLKSTDPSLQGIELLSLC 128

Query: 137 KSIIGTANSMGIKVV 152
           KS+IGTA SMG+KVV
Sbjct: 129 KSVIGTAKSMGVKVV 143

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BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match: A7HWQ0 (50S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) OX=402881 GN=rplK PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-29
Identity = 67/142 (47.18%), Postives = 91/142 (64.08%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + +   I+L VPAG A P+PP+GPALGQ  LN+M FCK FNA TQK +   P+ V ITAF
Sbjct: 3   KKIEGYIKLQVPAGAANPSPPIGPALGQRGLNIMEFCKAFNAATQKMEQGMPIPVVITAF 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +++LKKAA + SGS  PG   A T++V    EIA+ K +D      
Sbjct: 63  SDRSFTFAMKTPPASYFLKKAAKVTSGSKTPGRASAGTVTVAQCREIAEAKMAD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVVK 153
            L+   K I G+A SMG++VV+
Sbjct: 123 DLDQATKIIAGSARSMGLQVVE 142

[Close]
BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match: Q07KJ7 (50S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=316055 GN=rplK PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 5.9e-29
Identity = 65/140 (46.43%), Postives = 95/140 (67.86%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   ++L VPAG A P+PP+GPALGQ  LN+M FCK+FNA+TQK + +TP+ V IT +
Sbjct: 3   KKVTGYLKLQVPAGAANPSPPIGPALGQRGLNIMEFCKNFNAQTQKEEKNTPIPVVITIY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P ++++LK+AA I+SGS  PG  VA  +S   + EIA+ K  D  C   
Sbjct: 63  ADRSFTFEMKTPPMSFFLKQAAKIQSGSKLPGRDVAGKVSSAQVREIAERKMKDLNCD-- 122

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + + G+A SMG++V
Sbjct: 123 SIESAMRMVEGSARSMGLQV 140

[Close]
BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match: Q9Y3B7 (39S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-29
Identity = 67/149 (44.97%), Postives = 95/149 (63.76%), Query Frame = 0 

Query: 8   LTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTI 67
           L +  V   IR  V AG A P PP+GP LGQ  +++  FCK+FN RT+  K   P+   I
Sbjct: 11  LRKPEVGGVIRAIVRAGLAMPGPPLGPVLGQRGVSINQFCKEFNERTKDIKEGIPLPTKI 70

Query: 68  TAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDP-- 127
               D TFE  +  P+V+++LK AAGIE G+ + G  VA  +++KH+YEIA++K  D   
Sbjct: 71  LVKPDRTFEIKIGQPTVSYFLKAAAGIEKGARQTGKEVAGLVTLKHVYEIARIKAQDEAF 130

Query: 128 YCQYMPLESICKSIIGTANSMGIKVVKEL 155
             Q +PL S+ +SIIG+A S+GI+VVK+L
Sbjct: 131 ALQDVPLSSVVRSIIGSARSLGIRVVKDL 159

[Close]
BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match: B9KBJ9 (50S ribosomal protein L11 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NBRC 107923 / NS-E) OX=309803 GN=rplK PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-28
Identity = 72/141 (51.06%), Postives = 93/141 (65.96%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + VAA I+L +PAG A PAPPVGPALGQ+ +N+M FCK FNA T   KA   + V IT +
Sbjct: 3   KKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETAD-KAGMILPVVITVY 62

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
           +D +F F +K+P  ++ LKKAAGIESGSS P   +   ++ K I EIAK+K  D      
Sbjct: 63  EDKSFTFIIKTPPASFLLKKAAGIESGSSEPKRKIVGKVTRKQIEEIAKIKMPD--LNAN 122

Query: 131 PLESICKSIIGTANSMGIKVV 152
            LE+  + I GTA SMGI+VV
Sbjct: 123 DLEAAMRIIEGTARSMGIEVV 140

[Close]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match: A0A6J1KUS1 (54S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111497382 PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 1.4e-78
Identity = 150/155 (96.77%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKK+AGIESGSSRPGHVVA+TLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKSAGIESGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANS GIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSTGIKVVKELD 155

[Close]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match: A0A5A7T9U7 (54S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00710 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match: A0A1S3BMZ5 (54S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602 PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 1.9e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match: A0A0A0KWT6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 150/155 (96.77%), Postives = 153/155 (98.71%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK +
Sbjct: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPE 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVA+TLSVKHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVASTLSVKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKV+ ELE
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVLNELE 155

[Close]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match: A0A6J1BU21 (54S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005691 PE=3 SV=1)

HSP 1 Score: 301.2 bits (770), Expect = 2.5e-78
Identity = 149/155 (96.13%), Postives = 154/155 (99.35%), Query Frame = 0 

Query: 1   MATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKAD 60
           MATLKEILTRRPV+ATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK D
Sbjct: 1   MATLKEILTRRPVSATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPD 60

Query: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKV 120
           TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGI+SGSSRPGHVVA+TLS+KHIYEIAKV
Sbjct: 61  TPMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIDSGSSRPGHVVASTLSLKHIYEIAKV 120

Query: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           KQSDPYCQYMPLESICKSIIGTANSMGIKVVKEL+
Sbjct: 121 KQSDPYCQYMPLESICKSIIGTANSMGIKVVKELD 155

[Close]
BLAST of Clc02G25470 vs. TAIR 10
Match: AT4G35490.1 (mitochondrial ribosomal protein L11 )

HSP 1 Score: 273.9 bits (699), Expect = 8.1e-74
Identity = 132/154 (85.71%), Postives = 147/154 (95.45%), Query Frame = 0 

Query: 2   ATLKEILTRRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADT 61
           A  KEIL RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYK DT
Sbjct: 3   AAAKEIL-RRPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKPDT 62

Query: 62  PMAVTITAFKDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVK 121
           PMAVTITAFKDN+FEFTVKSP+V+WY+KKAAG++ GS+RPGH+  TTLSV+H+YEIAKVK
Sbjct: 63  PMAVTITAFKDNSFEFTVKSPTVSWYIKKAAGVDKGSTRPGHLSVTTLSVRHVYEIAKVK 122

Query: 122 QSDPYCQYMPLESICKSIIGTANSMGIKVVKELE 156
           Q+DP+CQYMPLESICKSIIGTANSMGIK+V++LE
Sbjct: 123 QTDPFCQYMPLESICKSIIGTANSMGIKIVQDLE 155

[Close]
BLAST of Clc02G25470 vs. TAIR 10
Match: AT1G32990.1 (plastid ribosomal protein l11 )

HSP 1 Score: 104.4 bits (259), Expect = 8.5e-23
Identity = 61/140 (43.57%), Postives = 81/140 (57.86%), Query Frame = 0 

Query: 11  RPVAATIRLTVPAGGARPAPPVGPALGQYRLNLMAFCKDFNARTQKYKADTPMAVTITAF 70
           + V   I+L + AG A PAPPVGPALG   +N+MAFCKD+NART   KA   + V IT F
Sbjct: 72  KKVVGVIKLALEAGKATPAPPVGPALGSKGVNIMAFCKDYNARTAD-KAGYIIPVEITVF 131

Query: 71  KDNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYM 130
            D +F F +K+P  +  L KAAG+E GS  P       +++  +  IA  K  D  C   
Sbjct: 132 DDKSFTFILKTPPASVLLLKAAGVEKGSKDPQQDKVGVITIDQLRTIAAEKLPDLNC--T 191

Query: 131 PLESICKSIIGTANSMGIKV 151
            +ES  + I GTA +MGI +
Sbjct: 192 TIESAMRIIAGTAANMGIDI 208

[Close]
BLAST of Clc02G25470 vs. TAIR 10
Match: AT5G51610.1 (Ribosomal protein L11 family protein )

HSP 1 Score: 51.6 bits (122), Expect = 6.6e-07
Identity = 26/79 (32.91%), Postives = 46/79 (58.23%), Query Frame = 0 

Query: 72  DNTFEFTVKSPSVTWYLKKAAGIESGSSRPGHVVATTLSVKHIYEIAKVKQSDPYCQYMP 131
           D +F F +K+P  ++ L KAAG++ GS  P  +    +++  + +IA+VK  +  C    
Sbjct: 92  DQSFTFILKTPPTSFLLLKAAGVKKGSKDPKQIKVGMITIDQVRKIAEVKLPELNC--TT 151

Query: 132 LESICKSIIGTANSMGIKV 151
           + S  ++I GTA +MGI +
Sbjct: 152 IVSTMRTIAGTAGNMGIDI 168

The following BLAST results are available for this feature:
BLAST of Clc02G25470 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038901904.12.1e-7998.7154S ribosomal protein L19, mitochondrial [Benincasa hispida][more]
KAG7034038.12.3e-7896.77mrpl19, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_023003939.13.0e-7896.7754S ribosomal protein L19, mitochondrial-like [Cucurbita maxima][more]
XP_008449842.13.9e-7896.77PREDICTED: 54S ribosomal protein L19, mitochondrial [Cucumis melo] >KAA0040080.1... [more]
XP_022132985.15.1e-7896.1354S ribosomal protein L19, mitochondrial [Momordica charantia][more]
BLAST of Clc02G25470 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9UTK22.3e-3351.8554S ribosomal protein L19, mitochondrial OS=Schizosaccharomyces pombe (strain 97... [more]
A7HWQ05.9e-2947.1850S ribosomal protein L11 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 130... [more]
Q07KJ75.9e-2946.4350S ribosomal protein L11 OS=Rhodopseudomonas palustris (strain BisA53) OX=31605... [more]
Q9Y3B77.8e-2944.9739S ribosomal protein L11, mitochondrial OS=Homo sapiens OX=9606 GN=MRPL11 PE=1 ... [more]
B9KBJ91.3e-2851.0650S ribosomal protein L11 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 435... [more]
BLAST of Clc02G25470 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1KUS11.4e-7896.7754S ribosomal protein L19, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A5A7T9U71.9e-7896.7754S ribosomal protein L19 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BMZ51.9e-7896.7754S ribosomal protein L19, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491602... [more]
A0A0A0KWT62.5e-7896.77Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G279840 PE=3 SV=1[more]
A0A6J1BU212.5e-7896.1354S ribosomal protein L19, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Clc02G25470 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G35490.18.1e-7485.71mitochondrial ribosomal protein L11 [more]
AT1G32990.18.5e-2343.57plastid ribosomal protein l11 [more]
AT5G51610.16.6e-0732.91Ribosomal protein L11 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000911Ribosomal protein L11/L12SMARTSM00649rl11ccoord: 17..151
e-value: 5.3E-71
score: 251.9
IPR000911Ribosomal protein L11/L12PANTHERPTHR1166160S RIBOSOMAL PROTEIN L12coord: 1..154
IPR000911Ribosomal protein L11/L12HAMAPMF_00736Ribosomal_L11coord: 13..152
score: 24.629032
IPR000911Ribosomal protein L11/L12CDDcd00349Ribosomal_L11coord: 17..150
e-value: 1.19602E-64
score: 191.895
IPR036769Ribosomal protein L11, C-terminal domain superfamilyGENE3D1.10.10.250coord: 78..151
e-value: 2.1E-29
score: 103.5
IPR036769Ribosomal protein L11, C-terminal domain superfamilySUPERFAMILY46906Ribosomal protein L11, C-terminal domaincoord: 76..151
IPR006519Ribosomal protein L11, bacterial-typeTIGRFAMTIGR01632TIGR01632coord: 13..152
e-value: 6.4E-56
score: 186.2
IPR020784Ribosomal protein L11, N-terminalPFAMPF03946Ribosomal_L11_Ncoord: 13..75
e-value: 2.6E-24
score: 84.8
IPR020783Ribosomal protein L11, C-terminalPFAMPF00298Ribosomal_L11coord: 80..150
e-value: 1.7E-28
score: 98.9
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilyGENE3D3.30.1550.10coord: 11..77
e-value: 5.2E-27
score: 95.3
IPR036796Ribosomal protein L11/L12, N-terminal domain superfamilySUPERFAMILY54747Ribosomal L11/L12e N-terminal domaincoord: 13..80
NoneNo IPR availablePANTHERPTHR11661:SF22SUBFAMILY NOT NAMEDcoord: 1..154

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G25470.1Clc02G25470.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0070180 large ribosomal subunit rRNA binding
molecular_function GO:0003735 structural constituent of ribosome