Clc02G24310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G24310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 36165494 .. 36167895 (-)
RNA-Seq Expression	Clc02G24310
Synteny	Clc02G24310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCGAGTAGGATAACTTTAGGGCTAATTCGTCGGGTGCGGCAAGGAGGTCAAAATGGGGTCCGACCCATTCCTTTCTCTTTCATTGATCTGGGTTGTGCAAATGAAATATTTTTCTGGTTGATTCACCAAGCTCGCATGAGGATCCTGAAATGGGTTCTAGCCCATTCTTCCATTGATTCGATGAGTGCTTGGAATGGACTTTTCCTCTTTCCATGGACTTCCTATTGGACCTTACACATTGTTTTAGACTATAAATATCCTTCTTGAATTGATTTAATGTCCGCTGAGCTTATCAGGACAATTTTGCCTAAAGGTCCAAAATTACCCATAACAACATGTAGTGCTCCTTGACACTTGATCCTCACTCTTGACTCTTGCTCCTCTCGATATGCACTCTAGCTCTTGATGGCTCAACACTTGCTCTCGTGAATCATCTCCTTATATTTCTAATTTGAATAGACGTGTAACATTTAATTTATTATTTATTGTAATGTTTCATTTATTATGGCATGTGTTGAGGGTTTTATCAAATCATAATAACTAAATTATAACATTTAAAATCACAGAGACAAAATTCTAATTTTCTACAAATCACAATGACAAAATTCATAATTTATCCTAAAATAAACAACTATTGTGTTGCTAAAATCATGAGCATCCACTTGTGTTTGTAACTTAAAAGTTTGCAAGGCGATTTGAACAACAAATCTCAGCCAACACACACTATAGGTAATTGAGCTATGATTCTCAAATATTTAAAAAAAAAAAAAAATTAATACCGCTTTGGTCAATTTACTATTTGTCATGTGAGTTTGATCCCTCTTGTCAAAACAAATAGCGTAAATTATTTTTTAAAAAAGAAAACAGTAAGCATGTTTTCTTTTATTTTTCAAAAAATATACCCAATTCTCATTGCAATGGGTAAAAAAGTGTTTGAAGGTCTCACAACGATAAACCTTGAACGTGAGAACTTGTTCTACAATGCTCTCCCCTCTATCCATATTGGTTTTCTTTACACATGTCTATTGTTTTATTTGTTAAGAAGAAAACAAGAAAAAATAAGTGTTTGTCAATCTATGCACACCATAAGTTACACTAAAAGATCATATATGTATAAGATTATAAAAAATAATAATAATAAAAAAAGAAAAAAAAGTAAAATGATAATAAGTTTATAAAAAGATTAAATTCATGTGCAATCTATAATAATAAATAAATAGGATTTTTTTAGTTCAATTAATCGTTATCCATAATTATTTGTAAAAGTCAAAATAAGCATAGCTTAAGTTTGAGAGTGGATACTATCGGTAATTGATATTATCTTTTTTCCCTAAGGTCGAATGTTCAATCCCCCACCTACTGCACTAATAAAACATTTGCAGACAAAAAATGTTACGTACAAACAAATTTATACTCTGGTTCTAAATTTTGTTTTACATCAAATTACACTACAAGTTCAAACAACTGACAAAGATTTAAATAAAAACACATTTGACAATTGATTGTCAAAATTTGTAATTCGTGATAGAGTTATTGCATTGTTAATTTATGCATTAATTAAAACAAATAAATTATAATTTTAGCTCTCTAGATGAATAATATAAATATCGATGAGTTATAAAAAAATTAGTTTTTTAAGGTTTAATTTGAAAATAATTGGTGGATGGAGAAAATAACTACAAGATAATGAAGATCGAGGGCCATCTATTAACCAAGAGAGAAACTAAAAATGTTCTAAAAAAGAAAAAAAAAGGAAATTAAAAAGAAGAGAAAAAGAGTTAAAATGAAAAAAGAAAAGAGGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAAAAAATCCCTGAGGGCAGCCCCCATGACATCCCCTCAATTATCTGAGAATTCCTAATTCCTCCCTTTTCATAAACACCTATCTCTCTCGGAAACAATCCTCGTTAAATCAACCACAAAAGAGGAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAGAAAAAAGGAAAAAACGAGAGGAAGGTTAAACGAAATAGAATTTCACTCTTTTTCATCTTCTTCTTCCTCCTCCTAAATCTGTTGTTAACGTTGCCACCTGGCGCATCTCAGCCGCCGCCGCCGCCACCGCCGTCGTCGACGACCTTTTTGAATTTCTTTCGATTTTCCCTCCCATACCTGATAACCCGAGCCGATTCAATTCCTCATTGTTCGCCTTGTCGCCGATTCAGTTCCGGCGACTCACAATTGGCGCCGTCGATAGGAATAGGATAACTCTAAGCCTCTGCGTTATTTCCATCTTGATTAGTCAAACTTCATTCTCTCTTCTTCTTGCCTTCTGAAGGTGAGGAACTTACTTTTGTTTTCGATCATCTTTTTCCGTCTGCTTCCCGATCGTTCATTCCGCCGTAA

mRNA sequence

ATGGGAGCGAGTAGGATAACTTTAGGGCTAATTCGTCGGGTGCGGCAAGGAGGTCAAAATGGGGTCCGACCCATTCCTTTCTCTTTCATTGATCTGGGTTGTGCAAATGAAATATTTTTCTGGTTGATTCACCAAGCTCGCATGAGGATCCTGAAATGGGTTCTAGCCCATTCTTCCATTGATTCGATGACCGCCGCCGCCGCCACCGCCGTCGTCGACGACCTTTTTGAATTTCTTTCGATTTTCCCTCCCATACCTGATAACCCGAGCCGATTCAATTCCTCATTGTTCGCCTTGTCGCCGATTCAGTTCCGGCGACTCACAATTGGCGCCGTCGATAGGAATAGGATAACTCTAAGCCTCTGCGTTATTTCCATCTTGATTAGTGAGGAACTTACTTTTGTTTTCGATCATCTTTTTCCGTCTGCTTCCCGATCGTTCATTCCGCCGTAA

Coding sequence (CDS)

ATGGGAGCGAGTAGGATAACTTTAGGGCTAATTCGTCGGGTGCGGCAAGGAGGTCAAAATGGGGTCCGACCCATTCCTTTCTCTTTCATTGATCTGGGTTGTGCAAATGAAATATTTTTCTGGTTGATTCACCAAGCTCGCATGAGGATCCTGAAATGGGTTCTAGCCCATTCTTCCATTGATTCGATGACCGCCGCCGCCGCCACCGCCGTCGTCGACGACCTTTTTGAATTTCTTTCGATTTTCCCTCCCATACCTGATAACCCGAGCCGATTCAATTCCTCATTGTTCGCCTTGTCGCCGATTCAGTTCCGGCGACTCACAATTGGCGCCGTCGATAGGAATAGGATAACTCTAAGCCTCTGCGTTATTTCCATCTTGATTAGTGAGGAACTTACTTTTGTTTTCGATCATCTTTTTCCGTCTGCTTCCCGATCGTTCATTCCGCCGTAA

Protein sequence

MGASRITLGLIRRVRQGGQNGVRPIPFSFIDLGCANEIFFWLIHQARMRILKWVLAHSSIDSMTAAAATAVVDDLFEFLSIFPPIPDNPSRFNSSLFALSPIQFRRLTIGAVDRNRITLSLCVISILISEELTFVFDHLFPSASRSFIPP

Homology

[Close]

BLAST of Clc02G24310 vs. NCBI nr
Match: KAG7010286.1 (hypothetical protein SDJN02_27079, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-04
Identity = 34/57 (59.65%), Postives = 39/57 (68.42%), Query Frame = 0


Query: 65  AAAATAVVDDLFEFLSIFPPIPDNPSRFNSSLFALSPIQFRRLTIGAVDRNRITLSL 122
           AAAA AVVDD  +FL  F       +R +  +FAL PIQF RLTIGA DRNRITLS+
Sbjct: 28  AAAAAAVVDDHLKFLVFF-----FQTRQSEQIFALPPIQFPRLTIGADDRNRITLSM 79

[Close]

BLAST of Clc02G24310 vs. ExPASy TrEMBL
Match: A0A0A0KEK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434300 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 82  FPPIPDNPSRFNSSLFALSPIQFRRLTIGAVDRNRI 118
           F P+PDNP+RFNSSLFALSPI FRRLTIGA  RNRI
Sbjct: 44  FSPLPDNPTRFNSSLFALSPIYFRRLTIGAFHRNRI 79

The following BLAST results are available for this feature:

BLAST of Clc02G24310 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010286.1	1.6e-04	59.65	hypothetical protein SDJN02_27079, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc02G24310 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G24310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK3	4.9e-07	83.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G434300 PE=4 SV=1	[more]

BLAST of Clc02G24310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G24310.2	Clc02G24310.2	mRNA