Clc02G24250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G24250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	subtilisin-like protease SBT4.3
Location	ClcChr02: 36130376 .. 36132377 (+)
RNA-Seq Expression	Clc02G24250
Synteny	Clc02G24250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGCTTCCATACATGTCAAAAGAGCAATCAAACTCATTTCAAGAGACAAGACCACTCGCTCAACAAATGTGACAAAGTTTACTTCCAAAGACCTCAATTACCATGCAATGGTGGCTCAAGTTTTGCTGATGCAGCAATCTGTGGTTAAGTTTCAAACAACAGTTACCAATGTAAGGGCTGCAAACTTTGCCTACAACTACAAGTTAGACTTCTTGCCATTTTCTCAAGTCACCAGAAGCTCAATACAAGAGTTGATCCTCAAGGGCTGTTGTTTTAGACATTGAATGAGAGGAAGAGTTTCGTCGTGATTGTGATCGAAGGGATAATTTCAGCTGAAATTACGTTTTCTACCGCATTGTTGGAATGATGGGATCCCATAAAGTGAGAAGATTGATTACACTTCAGTTCTTTTGAAAGAATACTTGTGTGCTAGGCGAGTTGCACCCATTTTTTTGCAGTCCACTCTAGGCACACAATAAAAAGAAACCATTAAAATATTTATAAGAAACAAAATGTGTTATGTGACAAATTGTGGTTGGACAAACTAATCTAGGTTGGAAAAATAGATGTATCCCAACTTAGACGCAAGTATTTTATTAACATATTTTCCTTTTTTATGCCTTTTATTTCTCTTGGCTTGATCTTGTCATAGCTAGATTAATAACTCCAGTTTTTAGGGGAAAAGATTATTCCTTGCTTATTTTAAAATGAAGAGCAATTATTAAAAACTAGAAGAAATTTTATTTTTTTCAGAATTTTTGGGTTATTTTTCAAAAAAGATAATTAATATGTGATATATATTTTAAAATAAAAACTAAAAACAATGTATGTAAACCATTCATAGCTATGGAAAATTTCATAAATGACAAGTGGTTGTTACAATCAATATCATGAATTTTCAATTTTATCAATTATCCTTAACCTACAAAATTGTTGAAATTAAAATCAACCATTATAACATCATTGTGAACCACCGTTGAGTTAAATAAAAAATGAAAAATTGCAAGAATCGCACATAAACCACTTGTTAATATTCTCTCTTAACTTTGAAATAAATGTGCACTCACCATCTTTATTTTTCAATTTTCCAGAAACTTGTTTGCTTGTGCCTTCTCTTAACTTTGTAATTTAGTATAAAAATGCAATGGTTGATTGATTTCATATTATTTATGTTGTTTTATGAAAAATTGTTTGTATAGAAAATTAATGGACAAAAAAAATGCAAACATCTATAGAAAATGTTAAGCGATATTTTTAAATATACCAAAATGAGTCAAACTATTTACAAATAATATTAAAATTTTACTATCTATTGCTGATACACAGTAAAATTTTATATCATTTATAAATAGTTTGATTTTTTTTTTTTTAAATGTTTAATGGTTAATATATTAATATAATATAATGATGATCTTATACGTATCTATCACAAACTTCTCATCATTACTTTAGACATAAATGTTTTTTATTTTAAATATTTATCATATAAAATCTTCAAATAGAAATTCAATATTAAAGATTTGAAGCTTTTTTATATAGCTTAACGAAGAGGTAGGGCAATTAGGTTTAATATTAAAATTATTATTTTATTAATATATTTAATGTCGAAATCATCAAACGATAATCCGTTGTCGTCCAGCGGTTAGGATATCTGGCTTTCACTCAGGAGACCCGGGTTCGATTCCCGGCATCGGAATTATTATTTTATTTTACGTCAGGTTTTTCTTTAATTGGGCCCATGAAAGCCCATTCCGCAGTTTTTTGGTCTTAAAATGGGCGAAGCGCCGGCGGAAGAAAGCCCATCTGGTATCCTCCAAAGTGTTAAATTATGGGCCTGGCCCATGGTCGTTAAACATTCTCCAGTGTTTGTTTTCGGGCGTGGCCCAATGTGGTGGTTTTAACTGGGCTGAGGTGCAGGCCGATGAAAGCCCAGATTCTGATTACCAGACGGCCATTTGTGGTATTTTTGAGATCAGAGGATTCGGTGATTGTTGTTGA

mRNA sequence

ATGTCTGCTTCCATACATGTCAAAAGAGCAATCAAACTCATTTCAAGAGACAAGACCACTCGCTCAACAAATGTGACAAAGTTTACTTCCAAAGACCTCAATTACCATGCAATGGTGGCTCAAGTTTTGCTGATGCAGCAATCTGTGGTTAAGTTTCAAACAACAGTTACCAATGTAAGGGCTGCAAACTTTGCCTACAACTACAAGTTAGACTTCTTGCCATTTTCTCAAGTCACCAGAAGCTCAATACAAGAGTTGATCCTCAAGGGCTCGGTTAGGATATCTGGCTTTCACTCAGGAGACCCGGGTTCGATTCCCGGCATCGGAATTATTATTTTATTTTACGTCAGGTTTTTCTTTAATTGGGCCCATGAAAGCCCATTCCGCAGTTTTTTGGTCTTAAAATGGGCGAAGCGCCGGCGGAAGAAAGCCCATCTGGTATCCTCCAAAGTGTTAAATTATGGGCCTGGCCCATGGTCGTTAAACATTCTCCAGTGTTTGTTTTCGGGCGTGGCCCAATGTGGTGGTTTTAACTGGGCTGAGGTGCAGGCCGATGAAAGCCCAGATTCTGATTACCAGACGGCCATTTGTGGTATTTTTGAGATCAGAGGATTCGGTGATTGTTGTTGA

Coding sequence (CDS)

ATGTCTGCTTCCATACATGTCAAAAGAGCAATCAAACTCATTTCAAGAGACAAGACCACTCGCTCAACAAATGTGACAAAGTTTACTTCCAAAGACCTCAATTACCATGCAATGGTGGCTCAAGTTTTGCTGATGCAGCAATCTGTGGTTAAGTTTCAAACAACAGTTACCAATGTAAGGGCTGCAAACTTTGCCTACAACTACAAGTTAGACTTCTTGCCATTTTCTCAAGTCACCAGAAGCTCAATACAAGAGTTGATCCTCAAGGGCTCGGTTAGGATATCTGGCTTTCACTCAGGAGACCCGGGTTCGATTCCCGGCATCGGAATTATTATTTTATTTTACGTCAGGTTTTTCTTTAATTGGGCCCATGAAAGCCCATTCCGCAGTTTTTTGGTCTTAAAATGGGCGAAGCGCCGGCGGAAGAAAGCCCATCTGGTATCCTCCAAAGTGTTAAATTATGGGCCTGGCCCATGGTCGTTAAACATTCTCCAGTGTTTGTTTTCGGGCGTGGCCCAATGTGGTGGTTTTAACTGGGCTGAGGTGCAGGCCGATGAAAGCCCAGATTCTGATTACCAGACGGCCATTTGTGGTATTTTTGAGATCAGAGGATTCGGTGATTGTTGTTGA

Protein sequence

MSASIHVKRAIKLISRDKTTRSTNVTKFTSKDLNYHAMVAQVLLMQQSVVKFQTTVTNVRAANFAYNYKLDFLPFSQVTRSSIQELILKGSVRISGFHSGDPGSIPGIGIIILFYVRFFFNWAHESPFRSFLVLKWAKRRRKKAHLVSSKVLNYGPGPWSLNILQCLFSGVAQCGGFNWAEVQADESPDSDYQTAICGIFEIRGFGDCC

Homology

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BLAST of Clc02G24250 vs. ExPASy TrEMBL
Match: A0A6J1H1M3 (subtilisin-like protease SBT4.3 OS=Cucurbita moschata OX=3662 GN=LOC111459607 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.3e-04
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 9   RAIKLISRDKTTRSTNVTKFTSKDLNYHAMVAQVLLMQQSVVKFQTTVTNVRAANFAYNY 68
           ++++ IS +K+  S   TKF+ +DLNY AMV +V  M+  VVKFQ TVTNV  AN    Y
Sbjct: 598 KSVRGISGNKSDCSRFSTKFSPQDLNYPAMVFEVPPMKPFVVKFQRTVTNVGTAN--STY 657

Query: 69  KLDFLPFSQV 79
           K +F PFS V
Sbjct: 658 KSEFSPFSIV 665

The following BLAST results are available for this feature:

BLAST of Clc02G24250 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G24250 vs.


Match Name	E-value	Identity	Description

BLAST of Clc02G24250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H1M3	9.3e-04	50.00	subtilisin-like protease SBT4.3 OS=Cucurbita moschata OX=3662 GN=LOC111459607 PE...	[more]

BLAST of Clc02G24250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.40.2310		coord: 5..88 e-value: 2.7E-6 score: 29.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G24250.1	Clc02G24250.1	mRNA