Clc02G24090 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGCCATGGAGGAAGGTTTCTTTGGAGCTTTTTTGGGAGATGAGAAACTGCGAGAAAATTCGAAATGCGGGAAATCTCGGAGACGGGGTGATTTATGTCATTTTAATTTGGTATTTATCGTATTTCAAGAAAGAAAGAAAAAAAATAATTATCTACAATGGGCCTCAAGGAGCAGGCCCATCAATTTTTATGGGCTTGGATATCCAAGCAAAGTGGGCTGGGTCCGACTTCGCCCCATTAGGCAACCAGCTACAGCTAGTTACCTTCTTCATCGAAAATTATCGAAAAATACTAACAATGCATCAGCTCGTTTTAAGCTCGTTTTTGTGACAAGTATTCGATCACAGGTACTCATGTAACAAATTTTTCTTTCTTTAAAAAATACATATTTTTTAAAATATTTTTTCCTTTGTAATTAACTAATACAAAGTTATCATAATGACCTCATGTTATTTATATAAATAAACAATGACCTAATCGGAAGATGATTTAAATTTAAAATGACAAAGCCAATAATATAATATATTTAAAATAAAAATTTTCTTATCCATATTGGTTAGAAAAATAAAAAAGAGTAAACAAGGAAATATTTACACGAAGTGGTGATTTTAATGATGAGGTAACATAATGACGTTGTGTGTATATATTAATGATGAGGTAACATAATGATGAGATAACCCGTTTTTTGCCCTAAGAACTGTCTCTCTCATGCTAAATAAAGGAGAGATCTATTTTAATAAATGAAACGATTGTTGGAAAAACACAATTGGTTTTTAATTTTTTCTTTTTTTTAGATAAAGAAGTTTTTTATTTTGATTTTGATTTTGATTTTTATTTTTTGATGGTTTCTAATTTGGATGTGCCTATTTTGAAGTTGTTTGTATTTAGAACAAACATATATAAAGAGATGGAAGTTTTTTATTTGAAGATTTCTCCCATTCATTTTCCCTCTCTGTTACAGGTCTCCTGCCTCTCCTTCCCCTCTTGAGACCCTATGGATTCTCGGACGGAGGTAATTTTTTCCTTTTTTCTTTTTTCTTTTTTTTTGGAAATAATATTTTTCCTCTCTTGATAATCCCATTAATTTATTGATCATTATCTAATGATTATGCCATGAGTTTATTTCAATTCCCATCCCTTTTGTTTTACTTTTCATTGTTTAGATTATGCTTTGAAATCCAAATCAATTGGAGTTTGAACTCTGGACTTTAAATCTTTCAAACTTTCAATGCTATATTAATTTCAAGTTGTATTATTAAGATCTCCAAAGAAAGAAAAGGAAGCATTTAGAAGATAATTGTGGCTCATGGTTTCATCAATTTATGTTTTTGCAGGTAATTGATAAATTTATGTATGATGATTTGGCTTGAAACTTTGGGAATCTTTTGTATTTAAATTAGGTAGATGAATGAATTATATAGAAACTCAATCAAAAATCTAATCAAGAGATGTTAATCTTCTAAGATTTCCAGATAAAAATTAGAAAAATTTCACCAAGAACATCCATAGGTTTTTTCTGAGATAGAAAGGAAAAAACTTTCCTGGAATTTCCCCTCTTTTTCTTTTTCTTTCTTTTCTCTATCCTAATTCAAGAGAATTATTGTATTTAATTCTCTTGCATCTGGACCAATTCCTGGCAAAAACAACCTAAAAATCAATCAAAATCACAAAAATGTGAGGTGGGGAAGAGAAATATGATGAATCCATTTGAAAATGCAACTGAAAGTTTGGTTGGTGTGTGTGTGTGTGTGTTTATGCAGAACAATAGGTGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATTGCCATCATCACCGCCATGAACACCAACACCAACATCGCCCCCGTCACCACCAACATCATCATCAACCACCTGCAGATGACTCTGTTGTCCCAGTAAGCATTTTTGTTTTTTTGTATTTGTACAAATAAGTGAAAAAAATGAGGATTTGAACCTCCAACTTAAAAAAGAATGAGTACTTGCCAATTATTGATGAGCTATGCTTACTTTGGCTTGCATCGGTTGTTCTTTTCCCACTTTAATCTCACAGTCAAATCTTGAACTATCTAATTTTTTTTTCTTCTAGGGAACAACCCACTTGACTCTGCAATGTTTTTGTGCAAAAATAAAAAAAAAAAATAAATAAATAAATCCTAGGTTGGGACACAAGTTGAACTTATTCAGTTCTTTATCAAAACCATGTTCATCTTCAACGGGTTAATCCAAACTCTGAACTTAATGAAGCAAACCAAGGTTGAACAAGAATTAAAATGTAATATTTGAAAACAGAAACTGAAGAAAATTTGTATAGAACGTAGTACCTGTTGGATACTGAGGCTGAGGAACAGATGCTGTATCTATCCCTTGATGGAGGGTTATTTATTTTGCTATCCATGATGGTGGCAACTTCATTTATCGCCTTCTGTGAAGTTACCCTTCCAGTAATTAGAGCTTTTCCCCAAGTTTAACCACAGCTAAACTTCAAAGTAATACACAATTATCTCATAATTAAGATACAATTCTTAATAGGTAGTGTCTTGTTCCAGCATACAAGGAACATAAGGATATTTGTAATAGAAATTATAATAGCAGGCTATCATGGATTTGATATTGACCAAAAAATTAATAGTAAATAAATAGATAATGAAAATCTCATAGTACAGTATAAGAAACGTGAGTGATTCCATCATAATTTTTTAAAGAAATTAAATTGCTATAAATATTACACATTTAATCCTTGCTCTTTTATTTTTCTCTTATCCAGCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAATCCACTCCTCTATGTTCTACTCATATCATGCTGTTTTTCTGAATCTTTTTTTTATTATTTTTTACTGGCATGTAAATGTAGATGGGACACGTTCACCATATGGACAATTGCATCAATTTCCCCTTCCCTGCATCTTGTTTAGGTTCTTTAGCTTATAAAACATGGAACCTTGCAATTTATTTCTTACTTCATGGAGCAAAACAAGATAAATAAACT ATGTGGCCATGGAGGAAGGTTTCTTTGGAGCTTTTTTGGGAGATGAGAAACTGCGAGAAAATTCGAAATGCGGGAAATCTCGGAGACGGGGTGATTTATGTCATTTTAATTTGGCAACCAGCTACAGCTAGTTACCTTCTTCATCGAAAATTATCGAAAAATACTAACAATGCATCAGCTCGTTTTAAGCTCGTTTTTGTGACAAGTATTCGATCACAGAACAATAGGTGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATTGCCATCATCACCGCCATGAACACCAACACCAACATCGCCCCCGTCACCACCAACATCATCATCAACCACCTGCAGATGACTCTGTTGTCCCAAAACTGAAGAAAATTTGTATAGAACGTAGTACCTGTTGGATACTGAGGCTGAGGAACAGATGCTGTATCTATCCCTTGATGGAGGCATACAAGGAACATAAGGATATTTTACAGTATAAGAAACCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGAGACAGAAGCCAATCCACTCCTCTATGTTCTACTCATATCATGCTGTTTTTCTGAATCTTTTTTTTATTATTTTTTACTGGCATGTAAATGTAGATGGGACACGTTCACCATATGGACAATTGCATCAATTTCCCCTTCCCTGCATCTTGTTTAGGTTCTTTAGCTTATAAAACATGGAACCTTGCAATTTATTTCTTACTTCATGGAGCAAAACAAGATAAATAAACT ATGTGGCCATGGAGGAAGGTTTCTTTGGAGCTTTTTTGGGAGATGAGAAACTGCGAGAAAATTCGAAATGCGGGAAATCTCGGAGACGGGGTGATTTATGTCATTTTAATTTGGCAACCAGCTACAGCTAGTTACCTTCTTCATCGAAAATTATCGAAAAATACTAACAATGCATCAGCTCGTTTTAAGCTCGTTTTTGTGACAAGTATTCGATCACAGAACAATAGGTGGAGATCTGTTCCAGAATTTGGGGGTTGGGATCACAATGCGCCCGGAGCAAGCAATTATTCTGTTGTGTTTTCTCAAGCTCGTGCCAATAGGAAACAGCAAAAAACTGACTTAACTGAGTTCAAAAGAACCAGCCTAGGGAATGAAAGGGAGTTAATGGCAAGCGCGGATAAGCATCATCGTCAACAAAAACATCACCACCATTGCCATCATCACCGCCATGAACACCAACACCAACATCGCCCCCGTCACCACCAACATCATCATCAACCACCTGCAGATGACTCTGTTGTCCCAAAACTGAAGAAAATTTGTATAGAACGTAGTACCTGTTGGATACTGAGGCTGAGGAACAGATGCTGTATCTATCCCTTGATGGAGGCATACAAGGAACATAAGGATATTTTACAGTATAAGAAACCAGAAGCAAAAGAAGATTCTGACCTACATCAATTGTTGTATCAGGCCTTGATATGA MWPWRKVSLELFWEMRNCEKIRNAGNLGDGVIYVILIWQPATASYLLHRKLSKNTNNASARFKLVFVTSIRSQNNRWRSVPEFGGWDHNAPGASNYSVVFSQARANRKQQKTDLTEFKRTSLGNERELMASADKHHRQQKHHHHCHHHRHEHQHQHRPRHHQHHHQPPADDSVVPKLKKICIERSTCWILRLRNRCCIYPLMEAYKEHKDILQYKKPEAKEDSDLHQLLYQALI Homology
BLAST of Clc02G24090 vs. NCBI nr
Match: XP_038901152.1 (lateral signaling target protein 2 homolog isoform X2 [Benincasa hispida]) HSP 1 Score: 171.4 bits (433), Expect = 9.2e-39 Identity = 94/120 (78.33%), Postives = 102/120 (85.00%), Query Frame = 0
BLAST of Clc02G24090 vs. NCBI nr
Match: XP_038901151.1 (lateral signaling target protein 2 homolog isoform X1 [Benincasa hispida]) HSP 1 Score: 169.5 bits (428), Expect = 3.5e-38 Identity = 93/122 (76.23%), Postives = 102/122 (83.61%), Query Frame = 0
BLAST of Clc02G24090 vs. NCBI nr
Match: KAE8647369.1 (hypothetical protein Csa_004264 [Cucumis sativus]) HSP 1 Score: 158.7 bits (400), Expect = 6.2e-35 Identity = 85/114 (74.56%), Postives = 94/114 (82.46%), Query Frame = 0
BLAST of Clc02G24090 vs. NCBI nr
Match: KAG6605945.1 (hypothetical protein SDJN03_03262, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035891.1 hypothetical protein SDJN02_02690, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 140.6 bits (353), Expect = 1.7e-29 Identity = 81/119 (68.07%), Postives = 93/119 (78.15%), Query Frame = 0
BLAST of Clc02G24090 vs. NCBI nr
Match: XP_022985820.1 (dendritic arbor reduction protein 1 isoform X2 [Cucurbita maxima]) HSP 1 Score: 138.3 bits (347), Expect = 8.6e-29 Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0
BLAST of Clc02G24090 vs. ExPASy TrEMBL
Match: A0A0A0KK09 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G430670 PE=4 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 7.1e-37 Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 0
BLAST of Clc02G24090 vs. ExPASy TrEMBL
Match: A0A6J1JCC4 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1) HSP 1 Score: 138.3 bits (347), Expect = 4.2e-29 Identity = 81/114 (71.05%), Postives = 88/114 (77.19%), Query Frame = 0
BLAST of Clc02G24090 vs. ExPASy TrEMBL
Match: A0A6J1DJD7 (lateral signaling target protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111020600 PE=4 SV=1) HSP 1 Score: 137.1 bits (344), Expect = 9.3e-29 Identity = 80/102 (78.43%), Postives = 86/102 (84.31%), Query Frame = 0
BLAST of Clc02G24090 vs. ExPASy TrEMBL
Match: A0A6J1JEB9 (dendritic arbor reduction protein 1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483749 PE=4 SV=1) HSP 1 Score: 136.0 bits (341), Expect = 2.1e-28 Identity = 79/116 (68.10%), Postives = 89/116 (76.72%), Query Frame = 0
BLAST of Clc02G24090 vs. ExPASy TrEMBL
Match: A0A6J1FX29 (dendritic arbor reduction protein 1 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448272 PE=4 SV=1) HSP 1 Score: 129.0 bits (323), Expect = 2.5e-26 Identity = 77/113 (68.14%), Postives = 84/113 (74.34%), Query Frame = 0
BLAST of Clc02G24090 vs. TAIR 10
Match: AT5G19473.1 (RPM1-interacting protein 4 (RIN4) family protein ) HSP 1 Score: 69.7 bits (169), Expect = 3.5e-12 Identity = 50/118 (42.37%), Postives = 64/118 (54.24%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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