Clc02G23640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G23640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein GL2-INTERACTING REPRESSOR 2
Location	ClcChr02: 35559934 .. 35560884 (+)
RNA-Seq Expression	Clc02G23640
Synteny	Clc02G23640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCAGTTAGGTTTGAATCATCCTTCCTTTTTAATTCCCTTTTCCTTCTCCCTTCCTTTCTTCACTTTCTTTTTTCTTTTTCACTTCTAAATCACATACAATGTAAGCCTCTCTCAACTCATGAATTCTATACCTCAATTTCATGGTTAATTGACCTCTCTCTCTCTTTTTTTTTTTTTTTTTTTTGGGTGAAGAAAATGAGCAAGAGATCCAGATCGAGTAGCGAGGCGGAGGTGGAGTCGCGAGTGAACTTGAACCGGTCGCCAACGACGTCATCTTCATCTTCGTCGGTGAGCTCATTTGGAGGGTCGGGGTTGGGGTCAGGGGCAGGATCGTCGTCGGAGATATCAGTGGGGAATTCGTGCTTGTCGTGCGAGGGGGAAGAACGACATGGTGGATTGGAAGAGATAATAACAAGATCAATGATGCTTGTGGGATGTCCGGGTTGCTTCATGTACGTGATGTTGACAGAGAAGAGCTCACAATGCCCAAAATGCAAGAACAATGTGTTTCTCGATTTCTTCAAGCAACAATCACATCATAACTAGCTACCTACGTCCAATTATTATTATTAGTAGTAGTAGTAGTTACTATTATAAGTACTCTTTTCTTAATTCTCATCATATTTCTTAACTTAATCAGGTTGTTAATTTTTTGCGTTTGGTTGGTGGGGGATTCTTATTACATATAATATAATGTTGCCCAACATGAAACCTAGGATTAACTTTCTGTTTGTATTGGATGAAGTTTCACTTTCTCTTTCTCTCTCTCTCTCTCCCCTCCATATGTTCTTGTCTTGTCGTTGTCATTAATTAACATGCAGCGTTTCTGTGTTCTTATCAGTGTGTAATGGATAAATGGGATCCATACATATTATTATACCAAGTGTTTGAGAAGTATTTATTCCAAAAAGAGAAAATTGTAATGGTTAGATGTATGAGAAAGAAACTAT

mRNA sequence

TGCAGTTAGGTTTGAATCATCCTTCCTTTTTAATTCCCTTTTCCTTCTCCCTTCCTTTCTTCACTTTCTTTTTTCTTTTTCACTTCTAAATCACATACAATAAAATGAGCAAGAGATCCAGATCGAGTAGCGAGGCGGAGGTGGAGTCGCGAGTGAACTTGAACCGGTCGCCAACGACGTCATCTTCATCTTCGTCGGTGAGCTCATTTGGAGGGTCGGGGTTGGGGTCAGGGGCAGGATCGTCGTCGGAGATATCAGTGGGGAATTCGTGCTTGTCGTGCGAGGGGGAAGAACGACATGGTGGATTGGAAGAGATAATAACAAGATCAATGATGCTTGTGGGATGTCCGGGTTGCTTCATGTACGTGATGTTGACAGAGAAGAGCTCACAATGCCCAAAATGCAAGAACAATGTGTTTCTCGATTTCTTCAAGCAACAATCACATCATAACTAGCTACCTACGTCCAATTATTATTATTAGTAGTAGTAGTAGTTACTATTATAAGTACTCTTTTCTTAATTCTCATCATATTTCTTAACTTAATCAGGTTGTTAATTTTTTGCGTTTGGTTGGTGGGGGATTCTTATTACATATAATATAATGTTGCCCAACATGAAACCTAGGATTAACTTTCTGTTTGTATTGGATGAAGTTTCACTTTCTCTTTCTCTCTCTCTCTCTCCCCTCCATATGTTCTTGTCTTGTCGTTGTCATTAATTAACATGCAGCGTTTCTGTGTTCTTATCAGTGTGTAATGGATAAATGGGATCCATACATATTATTATACCAAGTGTTTGAGAAGTATTTATTCCAAAAAGAGAAAATTGTAATGGTTAGATGTATGAGAAAGAAACTAT

Coding sequence (CDS)

ATGAGCAAGAGATCCAGATCGAGTAGCGAGGCGGAGGTGGAGTCGCGAGTGAACTTGAACCGGTCGCCAACGACGTCATCTTCATCTTCGTCGGTGAGCTCATTTGGAGGGTCGGGGTTGGGGTCAGGGGCAGGATCGTCGTCGGAGATATCAGTGGGGAATTCGTGCTTGTCGTGCGAGGGGGAAGAACGACATGGTGGATTGGAAGAGATAATAACAAGATCAATGATGCTTGTGGGATGTCCGGGTTGCTTCATGTACGTGATGTTGACAGAGAAGAGCTCACAATGCCCAAAATGCAAGAACAATGTGTTTCTCGATTTCTTCAAGCAACAATCACATCATAACTAG

Protein sequence

MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCEGEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHHN

Homology

[Close]

BLAST of Clc02G23640 vs. NCBI nr
Match: KGN48041.1 (hypothetical protein Csa_002820 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 100/115 (86.96%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSEAEVE RVNLNRSPT SSSSSSVS+F GSG G     SSEISVGNSCLSCE
Sbjct: 1   MSKRSR-SSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSG-----SSEISVGNSCLSCE 60

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHH 116
           GEE  G LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ HH
Sbjct: 61  GEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 109

[Close]

BLAST of Clc02G23640 vs. NCBI nr
Match: KAA0061725.1 (hypothetical protein E6C27_scaffold212G001000 [Cucumis melo var. makuwa] >TYJ96061.1 hypothetical protein E5676_scaffold182G00200 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.5e-37
Identity = 95/117 (81.20%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSEAEVE RVNLN+SPTTSSSSSSVS+FGGSG GS          G+SCLSCE
Sbjct: 1   MSKRSR-SSEAEVELRVNLNQSPTTSSSSSSVSTFGGSGSGS----------GDSCLSCE 60

Query: 61  GEERHGG-LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHHN 117
           GE++HGG LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ  H+
Sbjct: 61  GEDQHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPQHH 106

[Close]

BLAST of Clc02G23640 vs. NCBI nr
Match: KAG6570472.1 (NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25
Identity = 81/120 (67.50%), Postives = 88/120 (73.33%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSE +VE RVNLNR P+ ++SS            SG+GSSS+ISV NSCL  E
Sbjct: 486 MSKRSR-SSEPKVELRVNLNRLPSPATSSL-----------SGSGSSSDISVENSCLGWE 545

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK----QQSHHN 117
           G    G  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK    QQ HH+
Sbjct: 546 G----GVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQHHH 589

[Close]

BLAST of Clc02G23640 vs. NCBI nr
Match: KAG7035922.1 (hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-25
Identity = 78/116 (67.24%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSC- 60
           MSKR R SSE EV  RV++NRSPTT    SS+S FGGS  G G    S++SV +SCLS  
Sbjct: 1   MSKRPR-SSETEVALRVDMNRSPTT----SSMSMFGGSESGLG----SDVSVESSCLSLW 60

Query: 61  EGEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHH 116
           +GE      E I+TRSMMLVGCPGCFMYVMLT+KSSQCPKCKNNVFLDFF QQ HH
Sbjct: 61  DGEVEED--EMIVTRSMMLVGCPGCFMYVMLTDKSSQCPKCKNNVFLDFFNQQKHH 105

[Close]

BLAST of Clc02G23640 vs. NCBI nr
Match: KAG7010337.1 (hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 125.6 bits (314), Expect = 2.9e-25
Identity = 81/121 (66.94%), Postives = 87/121 (71.90%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSE +VE RVNLNR P+ ++SS            SG+GSSS+ISV NSCL  E
Sbjct: 1   MSKRSR-SSEPKVELRVNLNRLPSPATSSL-----------SGSGSSSDISVENSCLGWE 60

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFK------QQSH 116
           G    G  EEIITRSMMLVGCPGCFMYVMLTEKSSQCPKC NNVFLDFFK      QQ H
Sbjct: 61  G----GVEEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCHNNVFLDFFKHQQQQQQQQH 105

[Close]

BLAST of Clc02G23640 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MS+R+++  + E+  R+NL+  P+ +S  S V S           + S  +  +SC+S E
Sbjct: 1   MSRRNKNGPKLEL--RLNLSPPPSQASQMSLVRS----------PNRSNTTSPSSCVSSE 60

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQS 114
             +      E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++ +
Sbjct: 61  TNQEE---NETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENA 97

[Close]

BLAST of Clc02G23640 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.3e-07
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 5   SRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCEGEE- 64
           SR S + E++    LN SP TSS    V S       S + ++S  S  +SC+S E  + 
Sbjct: 2   SRRSPKLELK----LNLSPPTSSQRRMVRS------PSRSATTSPTSPPSSCVSSEMNQD 61

Query: 65  ----RHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQS 114
               R+    E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  + +
Sbjct: 62  EPSVRYSTSPE--TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENA 103

[Close]

BLAST of Clc02G23640 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-05
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 47  SSEISVGNSCLSCEGEERHGGLEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCKNNVF 106
           SS ++  +S   C  E   GG E    +SM++VGCP C MY++ + E   +CP+C ++V 
Sbjct: 23  SSLLTESSSSSLCSEEAEGGGGE---AKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVL 82

Query: 107 LDF 109
           LDF
Sbjct: 83  LDF 82

[Close]

BLAST of Clc02G23640 vs. ExPASy TrEMBL
Match: A0A0A0KJX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.9e-41
Identity = 100/115 (86.96%), Postives = 101/115 (87.83%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSEAEVE RVNLNRSPT SSSSSSVS+F GSG G     SSEISVGNSCLSCE
Sbjct: 1   MSKRSR-SSEAEVELRVNLNRSPTASSSSSSVSTFDGSGSG-----SSEISVGNSCLSCE 60

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHH 116
           GEE  G LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ HH
Sbjct: 61  GEEHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPHH 109

[Close]

BLAST of Clc02G23640 vs. ExPASy TrEMBL
Match: A0A5D3BBS4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G00200 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 7.1e-38
Identity = 95/117 (81.20%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKRSR SSEAEVE RVNLN+SPTTSSSSSSVS+FGGSG GS          G+SCLSCE
Sbjct: 1   MSKRSR-SSEAEVELRVNLNQSPTTSSSSSSVSTFGGSGSGS----------GDSCLSCE 60

Query: 61  GEERHGG-LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHHN 117
           GE++HGG LEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQ  H+
Sbjct: 61  GEDQHGGRLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQPQHH 106

[Close]

BLAST of Clc02G23640 vs. ExPASy TrEMBL
Match: A0A4P1R0I2 (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 3.1e-09
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLN--RSPTTSSSSSSVSSFGGSGLGSGAGS-SSEISVGNSCL 60
           MSKR+RS     +E R+NL+  R+PT+SS S+ +S    S L S   + SS  S G+SC+
Sbjct: 1   MSKRARS---PRLELRLNLSPPRTPTSSSISADISLLDFSILSSPTLTVSSHSSEGSSCV 60

Query: 61  SCEGEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHH 116
           S E EE         TR+M+LVGCP C MYVML+E   +CPKCK+ V LDF   + ++
Sbjct: 61  SSEAEE---------TRAMLLVGCPRCLMYVMLSEVDPKCPKCKSTVLLDFLNNEENN 106

[Close]

BLAST of Clc02G23640 vs. ExPASy TrEMBL
Match: A0A151R2G4 (Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042134 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 44/93 (47.31%), Postives = 56/93 (60.22%), Query Frame = 0


Query: 21  RSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCEGEERHGGLEEIITRSMMLVG 80
           RSP ++ SSSS  S+          SS   S G S LS EGE+         T+ M LVG
Sbjct: 10  RSPVSTDSSSSSVSY----------SSKMPSEGISVLSSEGEDNVQHTNGPETKPMPLVG 69

Query: 81  CPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQS 114
           CP CFMYVML+E + +CPKCK+ VFL+FFK ++
Sbjct: 70  CPRCFMYVMLSEVNPKCPKCKSTVFLEFFKDEN 92

[Close]

BLAST of Clc02G23640 vs. ExPASy TrEMBL
Match: A0A2I4FHX4 (uncharacterized protein LOC108998926 OS=Juglans regia OX=51240 GN=LOC108998926 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 5.3e-09
Identity = 51/120 (42.50%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MSKR+ +  + E+E  ++  R   + + S +VS+F          SSSEISV  SC+S E
Sbjct: 1   MSKRA-NGPKLELELNLSPPRREHSPAESLNVSNF----------SSSEISVEGSCVSSE 60

Query: 61  GEERHGGLE----EIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQSHHN 117
            E++   L+        RSMMLVGCP C MYVML+E   +CPKCK+ V LDF K+++  N
Sbjct: 61  PEDQPMTLQYSPSNAEPRSMMLVGCPRCLMYVMLSEADPKCPKCKSTVLLDFLKEENARN 109

[Close]

BLAST of Clc02G23640 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 1.2e-08
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = 0


Query: 1   MSKRSRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCE 60
           MS+R+++  + E+  R+NL+  P+ +S  S V S           + S  +  +SC+S E
Sbjct: 1   MSRRNKNGPKLEL--RLNLSPPPSQASQMSLVRS----------PNRSNTTSPSSCVSSE 60

Query: 61  GEERHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQS 114
             +      E IT SM+LVGCP C MYVML++   +CPKCK+ V LDF ++ +
Sbjct: 61  TNQEE---NETIT-SMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENA 97

[Close]

BLAST of Clc02G23640 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 46/114 (40.35%), Postives = 62/114 (54.39%), Query Frame = 0


Query: 5   SRSSSEAEVESRVNLNRSPTTSSSSSSVSSFGGSGLGSGAGSSSEISVGNSCLSCEGEE- 64
           SR S + E++    LN SP TSS    V S       S + ++S  S  +SC+S E  + 
Sbjct: 2   SRRSPKLELK----LNLSPPTSSQRRMVRS------PSRSATTSPTSPPSSCVSSEMNQD 61

Query: 65  ----RHGGLEEIITRSMMLVGCPGCFMYVMLTEKSSQCPKCKNNVFLDFFKQQS 114
               R+    E  T SM+LVGCP C MYVML+E   +CPKCK+ V LDF  + +
Sbjct: 62  EPSVRYSTSPE--TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENA 103

[Close]

BLAST of Clc02G23640 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 1.9e-06
Identity = 25/63 (39.68%), Postives = 38/63 (60.32%), Query Frame = 0


Query: 47  SSEISVGNSCLSCEGEERHGGLEEIITRSMMLVGCPGCFMYVMLT-EKSSQCPKCKNNVF 106
           SS ++  +S   C  E   GG E    +SM++VGCP C MY++ + E   +CP+C ++V 
Sbjct: 23  SSLLTESSSSSLCSEEAEGGGGE---AKSMVVVGCPNCIMYIITSLENDPRCPRCNSHVL 82

Query: 107 LDF 109
           LDF
Sbjct: 83  LDF 82

The following BLAST results are available for this feature:

BLAST of Clc02G23640 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48041.1	1.4e-40	86.96	hypothetical protein Csa_002820 [Cucumis sativus]	[more]
KAA0061725.1	1.5e-37	81.20	hypothetical protein E6C27_scaffold212G001000 [Cucumis melo var. makuwa] >TYJ960...	[more]
KAG6570472.1	1.3e-25	67.50	NAC domain-containing protein 40, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7035922.1	2.9e-25	67.24	hypothetical protein SDJN02_02722, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7010337.1	2.9e-25	66.94	hypothetical protein SDJN02_27130, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Clc02G23640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRN4	1.6e-07	37.17	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FNI1	6.3e-07	40.35	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9FMS4	2.6e-05	39.68	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Clc02G23640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX5	6.9e-41	86.96	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425780 PE=4 SV=1	[more]
A0A5D3BBS4	7.1e-38	81.20	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A4P1R0I2	3.1e-09	45.76	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_17077 PE=4 S...	[more]
A0A151R2G4	5.3e-09	47.31	Uncharacterized protein (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_042134 PE=4 S...	[more]
A0A2I4FHX4	5.3e-09	42.50	uncharacterized protein LOC108998926 OS=Juglans regia OX=51240 GN=LOC108998926 P...	[more]

BLAST of Clc02G23640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G11600.1	1.2e-08	37.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G06270.1	4.4e-08	40.35	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G22270.1	1.9e-06	39.68	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..55
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 1..115
None	No IPR available	PANTHER	PTHR33177:SF46	SUBFAMILY NOT NAMED	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G23640.1	Clc02G23640.1	mRNA