Clc02G22690 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G22690
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 34760128 .. 34760894 (+)
RNA-Seq Expression	Clc02G22690
Synteny	Clc02G22690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTCACGGGCAAAACCACCTGTCTACGACAACAGTGTTGAGACAAGTGAATGCTAAAGTTAAAAAAAAGTGTTATAATGCCAGCAATGAAGTTTTGTGGAAATGGCATTGCCATTTACCTTACCTTATATCTGCCTCCTCACGAGACCACATTTAAAGCTCTTTGTTTCAAAGTTCAACCCCTAGCTCCCTTTTTAAAAACCTCTTACACTCCAACACACACACACACACACACACACAACCAATCTTATTATTCTTACAAAATCCTCAACCTTATGGCTTCTCTTTTCCCATATTTCTTCATATATTTCCTCTTCCTTCTTCTATCTTCTCCCATTCTATCAATGGGGGCTCGTTGCGTCCCCCCGAGCGCCCCTAGCACCATCGTTACACCCCTCGCCACGCCCGACGCAGAAGACTACGAGACGGTGAAGCCTCAGCTTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTCCGCCGCTCCTCCGCCCCTAGCCGCTTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCAACTACTGATCATTCCATCAACACCATCCCTTGAAAATTATAAAAACACAATATATGTTTTGTTTGTTCAATTTTTGTTGTATATGCTTTCCATATCATCTCTCTTCTAATTTATTTTTATATATCAAAACTTTTGTTCATTGGATTCTTCTTATTTCTCCCTAAATTGTGGAAACTTATATATATGATTATTTGCTCTAAAA

mRNA sequence

GAAATTCACGGGCAAAACCACCTGTCTACGACAACAGTGTTGAGACAAGTGAATGCTAAAGTTAAAAAAAAGTGTTATAATGCCAGCAATGAAGTTTTGTGGAAATGGCATTGCCATTTACCTTACCTTATATCTGCCTCCTCACGAGACCACATTTAAAGCTCTTTGTTTCAAAGTTCAACCCCTAGCTCCCTTTTTAAAAACCTCTTACACTCCAACACACACACACACACACACACACAACCAATCTTATTATTCTTACAAAATCCTCAACCTTATGGCTTCTCTTTTCCCATATTTCTTCATATATTTCCTCTTCCTTCTTCTATCTTCTCCCATTCTATCAATGGGGGCTCGTTGCGTCCCCCCGAGCGCCCCTAGCACCATCGTTACACCCCTCGCCACGCCCGACGCAGAAGACTACGAGACGGTGAAGCCTCAGCTTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTCCGCCGCTCCTCCGCCCCTAGCCGCTTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCAACTACTGATCATTCCATCAACACCATCCCTTGAAAATTATAAAAACACAATATATGTTTTGTTTGTTCAATTTTTGTTGTATATGCTTTCCATATCATCTCTCTTCTAATTTATTTTTATATATCAAAACTTTTGTTCATTGGATTCTTCTTATTTCTCCCTAAATTGTGGAAACTTATATATATGATTATTTGCTCTAAAA

Coding sequence (CDS)

ATGCTAAAGTTAAAAAAAAGTGTTATAATGCCAGCAATGAAGTTTTGTGGAAATGGCATTGCCATTTACCTTACCTTATATCTGCCTCCTCACGAGACCACATTTAAAGCTCTTTGTTTCAAAGTTCAACCCCTAGCTCCCTTTTTAAAAACCTCTTACACTCCAACACACACACACACACACACACACAACCAATCTTATTATTCTTACAAAATCCTCAACCTTATGGCTTCTCTTTTCCCATATTTCTTCATATATTTCCTCTTCCTTCTTCTATCTTCTCCCATTCTATCAATGGGGGCTCGTTGCGTCCCCCCGAGCGCCCCTAGCACCATCGTTACACCCCTCGCCACGCCCGACGCAGAAGACTACGAGACGGTGAAGCCTCAGCTTAACCGAAAGAGGCTGGTTTTTGGTGGGAATGAAGTCAAGAGCTGCCTTCCTAAAGGCTTCCGCCGCTCCTCCGCCCCTAGCCGCTTTGTTAATTACCATACTTCTGGTGGTTGTTCTCCAACTACTGATCATTCCATCAACACCATCCCTTGA

Protein sequence

MLKLKKSVIMPAMKFCGNGIAIYLTLYLPPHETTFKALCFKVQPLAPFLKTSYTPTHTHTHTHNQSYYSYKILNLMASLFPYFFIYFLFLLLSSPILSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQLNRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTIP

Homology

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BLAST of Clc02G22690 vs. NCBI nr
Match: KAG6570806.1 (hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 182.2 bits (461), Expect = 4.0e-42
Identity = 92/104 (88.46%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 76  MASLFPYFFIYFLFLLLSSPILSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQLNRKR 135
           MASLFP+ F     LLLSSP  SM ARCVPPSAPSTIVTPLATP+AEDYETVKPQLNRKR
Sbjct: 1   MASLFPFLFYLLFLLLLSSPSPSMAARCVPPSAPSTIVTPLATPEAEDYETVKPQLNRKR 60

Query: 136 LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINT 180
           LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCS TTDHSINT
Sbjct: 61  LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSSTTDHSINT 104

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BLAST of Clc02G22690 vs. NCBI nr
Match: KAE8646888.1 (hypothetical protein Csa_020968, partial [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.4e-40
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 75  LMASLFPYFFIYFLF-LLLSSPILSMGARCVPPSAPSTIVTPLATPD-AEDYETVKPQL- 134
           +MASLFPYFFIY LF LLLSSP  SM ARCVPPSAPSTIV PLATPD AE YETVKPQL 
Sbjct: 2   IMASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLI 61

Query: 135 NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS 177
           NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS
Sbjct: 62  NRKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHS 106

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BLAST of Clc02G22690 vs. NCBI nr
Match: KAA0035234.1 (hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK22389.1 hypothetical protein E5676_scaffold173G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 152.5 bits (384), Expect = 3.4e-33
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 99  MGARCVPPSAPSTIVTPL-ATPD-AEDYETVKPQL-NRKRLVFGGNEVKSCLPKGFRRSS 158
           M ARCVPPSAPSTIV PL ATPD AEDYETVKPQL NRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 159 APSRFVNYHTSGGCSPTTDHSINTIP 182
           APSRFVNYHTSGGCSPTTDHSINT P
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINTNP 86

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BLAST of Clc02G22690 vs. NCBI nr
Match: KAF3961747.1 (hypothetical protein CMV_013666 [Castanea mollissima])

HSP 1 Score: 99.8 bits (247), Expect = 2.6e-17
Identity = 56/93 (60.22%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 76  MASLFPYFFIYFLFLLLSSPILSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQLNRKR 135
           M++ F Y  +  L LLLSS   +M AR +P SAPSTIV PL + +A+DY T+KP    K 
Sbjct: 1   MSTSFYYTLVLCLLLLLSSIDTNMAARKIPSSAPSTIVRPLVS-EAQDYVTMKPLFKHKH 60

Query: 136 LVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGG 169
            VF G EVKSCLPKGFR SSAPSRFVNYH  GG
Sbjct: 61  RVFRGKEVKSCLPKGFRHSSAPSRFVNYHALGG 92

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BLAST of Clc02G22690 vs. NCBI nr
Match: PQQ09524.1 (hypothetical protein Pyn_04778 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 91.7 bits (226), Expect = 7.2e-15
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 97  LSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQ-LNRKRLVFGGNEVKSCLPKGFRRSS 156
           +S+ AR +P SAPST+V PL T   + Y ++KPQ LN K+ VF G EVK CLPKGFR +S
Sbjct: 22  VSLAARNIPSSAPSTMVRPLVTEGLDHYVSMKPQDLNHKQQVFHGTEVKDCLPKGFRHAS 81

Query: 157 APSRFVNYHTSG-GCS 171
           APSR+VNYHT G GCS
Sbjct: 82  APSRYVNYHTLGQGCS 97

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BLAST of Clc02G22690 vs. ExPASy TrEMBL
Match: A0A0A0KDD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 3.3e-42
Identity = 99/109 (90.83%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 76  MASLFPYFFIYFLF-LLLSSPILSMGARCVPPSAPSTIVTPLATPD-AEDYETVKPQL-N 135
           MASLFPYFFIY LF LLLSSP  SM ARCVPPSAPSTIV PLATPD AE YETVKPQL N
Sbjct: 1   MASLFPYFFIYLLFLLLLSSPTQSMCARCVPPSAPSTIVRPLATPDNAEAYETVKPQLIN 60

Query: 136 RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTIP 182
           RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINT P
Sbjct: 61  RKRLVFGGNEVKSCLPKGFRRSSAPSRFVNYHTSGGCSPTTDHSINTNP 109

[Close]

BLAST of Clc02G22690 vs. ExPASy TrEMBL
Match: A0A5D3DGK4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold173G00130 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.7e-33
Identity = 80/86 (93.02%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 99  MGARCVPPSAPSTIVTPL-ATPD-AEDYETVKPQL-NRKRLVFGGNEVKSCLPKGFRRSS 158
           M ARCVPPSAPSTIV PL ATPD AEDYETVKPQL NRKRLVFGGNEVKSCLPKGFRRSS
Sbjct: 1   MCARCVPPSAPSTIVRPLAATPDNAEDYETVKPQLINRKRLVFGGNEVKSCLPKGFRRSS 60

Query: 159 APSRFVNYHTSGGCSPTTDHSINTIP 182
           APSRFVNYHTSGGCSPTTDHSINT P
Sbjct: 61  APSRFVNYHTSGGCSPTTDHSINTNP 86

[Close]

BLAST of Clc02G22690 vs. ExPASy TrEMBL
Match: A0A314YWA3 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_04778 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.5e-15
Identity = 47/76 (61.84%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 97  LSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQ-LNRKRLVFGGNEVKSCLPKGFRRSS 156
           +S+ AR +P SAPST+V PL T   + Y ++KPQ LN K+ VF G EVK CLPKGFR +S
Sbjct: 22  VSLAARNIPSSAPSTMVRPLVTEGLDHYVSMKPQDLNHKQQVFHGTEVKDCLPKGFRHAS 81

Query: 157 APSRFVNYHTSG-GCS 171
           APSR+VNYHT G GCS
Sbjct: 82  APSRYVNYHTLGQGCS 97

[Close]

BLAST of Clc02G22690 vs. ExPASy TrEMBL
Match: A0A803Q0F1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 5.9e-15
Identity = 50/96 (52.08%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 85  IYFLFLLLSSPILSMGARCVPPSAPSTIVTPLATPDAEDYETVKPQLN-RKRLVFGGNEV 144
           +  L LL+    +SMG R +P SAPST+V PLAT D + Y T++P LN  ++ VF   + 
Sbjct: 24  VVVLLLLVCCLDVSMGGRAIPSSAPSTVVRPLATDDVQAYVTMRPHLNPGQKQVFRERDF 83

Query: 145 KSCLPKGFRRSSAPSRFVNYHTSG---GCSPTTDHS 177
           K CLPKGFR +SAPSRFVNYHT G   GCS    H+
Sbjct: 84  KGCLPKGFRHASAPSRFVNYHTLGATSGCSSINKHT 119

[Close]

BLAST of Clc02G22690 vs. ExPASy TrEMBL
Match: I1M4I1 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G323700 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.7e-15
Identity = 53/93 (56.99%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 82  YFFIYFLFLLLSSPIL--SMGARCVPPSAPSTIVTPLATPDAEDYETVKPQLNRKRLVFG 141
           +F +  +FLLLS   L  +MG R +PPSAPST+  PL + + E+Y  VKPQLN K     
Sbjct: 5   HFSLLAIFLLLSLDSLGTTMGGRLIPPSAPSTVTRPLVSSEVENY--VKPQLNHKLKALQ 64

Query: 142 GNEVKSCLPKGFRRSSAPSRFVNYHT--SGGCS 171
           G EVK CLPKG R +SAPSRFVNY T  SGGCS
Sbjct: 65  GREVKGCLPKGSRHNSAPSRFVNYKTLGSGGCS 95

The following BLAST results are available for this feature:

BLAST of Clc02G22690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6570806.1	4.0e-42	88.46	hypothetical protein SDJN03_29721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8646888.1	6.4e-40	90.48	hypothetical protein Csa_020968, partial [Cucumis sativus]	[more]
KAA0035234.1	3.4e-33	93.02	hypothetical protein E6C27_scaffold228G00110 [Cucumis melo var. makuwa] >TYK2238...	[more]
KAF3961747.1	2.6e-17	60.22	hypothetical protein CMV_013666 [Castanea mollissima]	[more]
PQQ09524.1	7.2e-15	61.84	hypothetical protein Pyn_04778 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Clc02G22690 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G22690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDD3	3.3e-42	90.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147570 PE=4 SV=1	[more]
A0A5D3DGK4	1.7e-33	93.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A314YWA3	3.5e-15	61.84	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_047...	[more]
A0A803Q0F1	5.9e-15	52.08	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]
I1M4I1	7.7e-15	56.99	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_13G323700 PE=4 SV=1	[more]

BLAST of Clc02G22690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36619:SF2	OS04G0208900 PROTEIN	coord: 79..174
None	No IPR available	PANTHER	PTHR36619	OS04G0208900 PROTEIN	coord: 79..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G22690.1	Clc02G22690.1	mRNA