Clc02G22340 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G22340
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrotransposon protein
Location	ClcChr02: 34441141 .. 34442164 (+)
RNA-Seq Expression	Clc02G22340
Synteny	Clc02G22340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGAGACTTTTCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACATTGAAGAGACAGTATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGACGGTGAGGCGGAGATATTTGACGCATGGGTCAAGGTAATTTAATTACATGTTTTATTTATTTCTTCTTCGTTTAAATTTGTATAGGCCATAACATAACACGAGCCACCTTTAACAGAGTCATCCGAGTGCAAAAGGACTGCGCCATAAGTCATTTCCATAGTATGATGACTTGGCCATCGTATTCGACAAAGATAGAACCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGCGGTAGAGGGTCTGGGAGTAGCTTAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCCTGGTTTGTCAGTACAGTATGGATTGACTGTTGCACGATCATTACTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGTATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

mRNA sequence

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGAGACTTTTCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACATTGAAGAGACAGTATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGACGGTGAGGCGGAGATATTTGACGCATGGGTCAAGTATGATGACTTGGCCATCGTATTCGACAAAGATAGAACCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGCGGTAGAGGGTCTGGGAGTAGCTTAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCCTGGTTTGTCAGTACAGTATGGATTGACTGTTGCACGATCATTACTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGTATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Coding sequence (CDS)

ATGGAAGCATCCGGGTCACGAGCAAGAGCCGCTAAACATGTATGGACGGATGAGGAGGATAGAATCCTCGTGGAGTGTTTGGTCCAGTGTGTGCAGTCTGGACACTGGCGAGCTGATAACGAGACTTTTCGACCTGGATTCCTATCAAACATACTACGGATGATGCAGCAGAAGATACCAGGGTGTTCCATACAGGTCAGCCCACATCTGGAGTCAAGGGTCAGGACATTGAAGAGACAGTATAGCGCGATCGCTGAAATGTTGGGCCCAGGCTGTAGTGGGTTTGGGTGGAATGTGGAGCGCAAATGTATTGACGGTGAGGCGGAGATATTTGACGCATGGGTCAAGTATGATGACTTGGCCATCGTATTCGACAAAGATAGAACCACAGGGAGTCATGCAACCACCACTGCAGAGGTCGGATCTGAACCTGTTATGGAAGAGGAGAACGAGGACATCCTGAACAACCAGTCCCCGGACTTTGAGAACTTCTATATTCCTGATCCACCTTTTGCTAGCTCGCCCCCGTCAGAGGACTATTCGACTACCCCCAGCGGTAGAGGGTCTGGGAGTAGCTTAAGGAGTAGGAGGTCCAGAAGTTCATCGATTGGAGAGTACAACGAGGTGGTTCGTGAGGGATTCCAACTTCTGACGAAGTCTATTGACGGCATTGCACAGTGGCCTGTCATGAACGAGGACCTGGCAAGGCGTCGTCGTCGAGAACTATACGCCGAGCTGCAATCCATTCCTGGTTTGTCAGTACAGTATGGATTGACTGTTGCACGATCATTACTTGCAGATCCAATGCTGTTAAGCCACTTTGTGGACTTCCCACCACAGTGGAAGTACGACTATTGTATGCAAGTCCTCGGGCGACCACGGGATCCAGCACCATGA

Protein sequence

MEASGSRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQVSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAWVKYDDLAIVFDKDRTTGSHATTTAEVGSEPVMEEENEDILNNQSPDFENFYIPDPPFASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVMNEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVLGRPRDPAP

Homology

[Close]

BLAST of Clc02G22340 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 218.4 bits (555), Expect = 8.4e-53
Identity = 121/291 (41.58%), Postives = 172/291 (59.11%), Query Frame = 0


Query: 4   SGSRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCS 63
           + + ++A KH WT   D +LVECL+Q V+ G WRADN TF+ G+L  + ++M++KI G +
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 64  IQVSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAWVKYDDLAIV 123
           IQV+P+L+SRV+ LK+QY AIAEM+GP CSGFGWN ERKCI+ E  +FD WVK       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 124 FDKDRTTGSHATTTAEVGSEPVMEEENEDILNNQSPDFENFYIPDPPFASSPPSEDYSTT 183
                       T  ++      EE++ DI      + E+F IP+P     P  ED  +T
Sbjct: 122 ------------TARDI------EEDDMDI------NLEDFDIPNPHGLEPPSGEDMPST 181

Query: 184 PS--GRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVMNEDLARRRRRE 243
           P+     +GSS  S++ RS S G+  +  R   +  +K I  IA W     ++     + 
Sbjct: 182 PTSMAHDAGSSRPSKKRRSYS-GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKR 241

Query: 244 LYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVLGR 293
           LY +LQ+IPG+ V   L VA SLL DP +L  F+D+P +WKY  CM++LGR
Sbjct: 242 LYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGR 259

[Close]

BLAST of Clc02G22340 vs. NCBI nr
Match: KAA0057083.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 6.9e-47
Identity = 113/300 (37.67%), Postives = 165/300 (55.00%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  + E  D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]

BLAST of Clc02G22340 vs. NCBI nr
Match: ADN34114.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-46
Identity = 113/304 (37.17%), Postives = 165/304 (54.28%), Query Frame = 0


Query: 2   EASGSRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPG 61
           E   S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG
Sbjct: 354 EIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPG 413

Query: 62  CSIQVSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW------- 121
            +I  S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W       
Sbjct: 414 SNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKG 473

Query: 122 ------VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYI 181
                 V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y 
Sbjct: 474 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYS 533

Query: 182 PDPPFASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQ 241
           P    +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+
Sbjct: 534 PGLNMSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 593

Query: 242 WPVMNEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYC 291
           WP++    A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC
Sbjct: 594 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 653

[Close]

BLAST of Clc02G22340 vs. NCBI nr
Match: KAA0035621.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046728.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0052099.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0054495.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-46
Identity = 112/300 (37.33%), Postives = 164/300 (54.67%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]

BLAST of Clc02G22340 vs. NCBI nr
Match: KAA0038122.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0055248.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97185.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK00369.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196.1 bits (497), Expect = 4.4e-46
Identity = 112/300 (37.33%), Postives = 164/300 (54.67%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]

BLAST of Clc02G22340 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 4.1e-53
Identity = 121/291 (41.58%), Postives = 172/291 (59.11%), Query Frame = 0


Query: 4   SGSRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCS 63
           + + ++A KH WT   D +LVECL+Q V+ G WRADN TF+ G+L  + ++M++KI G +
Sbjct: 2   ASTNSKATKHRWT-TIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGSN 61

Query: 64  IQVSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAWVKYDDLAIV 123
           IQV+P+L+SRV+ LK+QY AIAEM+GP CSGFGWN ERKCI+ E  +FD WVK       
Sbjct: 62  IQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------- 121

Query: 124 FDKDRTTGSHATTTAEVGSEPVMEEENEDILNNQSPDFENFYIPDPPFASSPPSEDYSTT 183
                       T  ++      EE++ DI      + E+F IP+P     P  ED  +T
Sbjct: 122 ------------TARDI------EEDDMDI------NLEDFDIPNPHGLEPPSGEDMPST 181

Query: 184 PS--GRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVMNEDLARRRRRE 243
           P+     +GSS  S++ RS S G+  +  R   +  +K I  IA W     ++     + 
Sbjct: 182 PTSMAHDAGSSRPSKKRRSYS-GDLMDTFRASMRETSKEIGKIAAWQREKMEIESSLHKR 241

Query: 244 LYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVLGR 293
           LY +LQ+IPG+ V   L VA SLL DP +L  F+D+P +WKY  CM++LGR
Sbjct: 242 LYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRILGR 259

[Close]

BLAST of Clc02G22340 vs. ExPASy TrEMBL
Match: A0A5A7UME4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold615G00290 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.3e-47
Identity = 113/300 (37.67%), Postives = 165/300 (55.00%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  + E  D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAEAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]

BLAST of Clc02G22340 vs. ExPASy TrEMBL
Match: E5GCB5 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 113/304 (37.17%), Postives = 165/304 (54.28%), Query Frame = 0


Query: 2   EASGSRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPG 61
           E   S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG
Sbjct: 354 EIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPG 413

Query: 62  CSIQVSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW------- 121
            +I  S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W       
Sbjct: 414 SNIHAST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKG 473

Query: 122 ------VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYI 181
                 V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y 
Sbjct: 474 LLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYS 533

Query: 182 PDPPFASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQ 241
           P    +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+
Sbjct: 534 PGLNMSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAE 593

Query: 242 WPVMNEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYC 291
           WP++    A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC
Sbjct: 594 WPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYC 653

[Close]

BLAST of Clc02G22340 vs. ExPASy TrEMBL
Match: A0A5D3DPR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold259G00580 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-46
Identity = 112/300 (37.33%), Postives = 164/300 (54.67%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAVAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

[Close]

BLAST of Clc02G22340 vs. ExPASy TrEMBL
Match: A0A5D3CBF7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00350 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.2e-46
Identity = 112/300 (37.33%), Postives = 164/300 (54.67%), Query Frame = 0


Query: 6   SRARAAKHVWTDEEDRILVECLVQCVQSGHWRADNETFRPGFLSNILRMMQQKIPGCSIQ 65
           S +R  KH WT EE+  LVECLV+ V +G WR+DN TFRPG+L+ + RMM  KIPG +I 
Sbjct: 3   SSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFKIPGSNIH 62

Query: 66  VSPHLESRVRTLKRQYSAIAEMLGPGCSGFGWNVERKCIDGEAEIFDAW----------- 125
            S  ++SR++ +KR + A+AEM GP CSGFGWN E+KCI  E E+FD W           
Sbjct: 63  AST-IDSRIKLMKRMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDDWSHPAAKGLLNK 122

Query: 126 --VKYDDLAIVFDKDRTTGSHATTTAEVGSE--PVMEEENEDILNNQSPDFENFYIPDPP 185
             V YD+L+ VF KDR TG  A + A++GS   P  +    D +     DF   Y P   
Sbjct: 123 SFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAGAADAM--PDTDFPPMYSPGLN 182

Query: 186 FASSPPSEDYSTTPSGRGSGSSLRSRRSRSSSIGEYNEVVREGFQLLTKSIDGIAQWPVM 245
            +     E  +   S R + SS  S+R R     +  ++VR   +   + +  IA+WP++
Sbjct: 183 MSPDDLMETRTARVSERRNVSS-GSKRKRPGHATDSGDIVRTAIEYGNEQLHRIAEWPIL 242

Query: 246 NEDLARRRRRELYAELQSIPGLSVQYGLTVARSLLADPMLLSHFVDFPPQWKYDYCMQVL 291
               A + R+E+   L++IP L++     + R L+ +   +  F++ P   KY YC  +L
Sbjct: 243 QRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKYPYCSLIL 298

The following BLAST results are available for this feature:

BLAST of Clc02G22340 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050106.1	8.4e-53	41.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0057083.1	6.9e-47	37.67	retrotransposon protein [Cucumis melo var. makuwa] >TYK09001.1 retrotransposon p...	[more]
ADN34114.1	3.4e-46	37.17	retrotransposon protein [Cucumis melo subsp. melo]	[more]
KAA0035621.1	4.4e-46	37.33	retrotransposon protein [Cucumis melo var. makuwa] >KAA0041647.1 retrotransposon...	[more]
KAA0038122.1	4.4e-46	37.33	retrotransposon protein [Cucumis melo var. makuwa] >KAA0047362.1 retrotransposon...	[more]

BLAST of Clc02G22340 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G22340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U7F7	4.1e-53	41.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UME4	3.3e-47	37.67	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
E5GCB5	1.6e-46	37.17	Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]
A0A5D3DPR5	2.2e-46	37.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CBF7	2.2e-46	37.33	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Clc02G22340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 15..112 e-value: 1.7E-11 score: 45.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..151
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 8..291

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G22340.1	Clc02G22340.1	mRNA