Clc02G22270 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G22270
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Location	ClcChr02: 34413733 .. 34413969 (+)
RNA-Seq Expression	Clc02G22270
Synteny	Clc02G22270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGGAAACAGCGGTGGCCGCGATTCTCGGAAGGCTGGGGCGTCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTGGCCCTCGTTCACTACGTCGGCGACGGAGAACCGACCGATCCTCGGGAGCGGAGCAAGCGCCGGCTTCGAGCCTTGCAGGGCCCGCCCATTCGTGGCGGAGATGGCGGCCGACTGCCGCATGCGGTGGTGAATTCAAGCGCCTAA

mRNA sequence

ATGGAGGCGGAAACAGCGGTGGCCGCGATTCTCGGAAGGCTGGGGCGTCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTGGCCCTCGTTCACTACGTCGGCGACGGAGAACCGACCGATCCTCGGGAGCGGAGCAAGCGCCGGCTTCGAGCCTTGCAGGGCCCGCCCATTCGTGGCGGAGATGGCGGCCGACTGCCGCATGCGGTGGTGAATTCAAGCGCCTAA

Coding sequence (CDS)

ATGGAGGCGGAAACAGCGGTGGCCGCGATTCTCGGAAGGCTGGGGCGTCATTGCTATGCGGTGTTGTGTTTGGGAGTGCTTCTTTTGACGGTGGCCCTCGTTCACTACGTCGGCGACGGAGAACCGACCGATCCTCGGGAGCGGAGCAAGCGCCGGCTTCGAGCCTTGCAGGGCCCGCCCATTCGTGGCGGAGATGGCGGCCGACTGCCGCATGCGGTGGTGAATTCAAGCGCCTAA

Protein sequence

MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPPIRGGDGGRLPHAVVNSSA

Homology

[Close]

BLAST of Clc02G22270 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 7.6e-22
Identity = 56/65 (86.15%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 1  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPP 60
          MEAETA+AAILGRLGRHCYAVLCLGVLLLTVA+VHYVGDGEPTDPRER+KRRLR L G  
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGGD 66
          I G D
Sbjct: 61 ILGED 65

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BLAST of Clc02G22270 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 110.2 bits (274), Expect = 8.4e-21
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQG-- 60
          ME ETAV AILGRLGRHCYAVLCLGVLLLTVA+VHYVGDGEPTDPRERSKRRLR L G  
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60

Query: 61 --PPI 62
            PP+
Sbjct: 61 DPPPV 65

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BLAST of Clc02G22270 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 8.4e-21
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQG-- 60
          ME ETAV AILGRLGRHCYAVLCLGVLLLTVA+VHYVGDGEPTDPRERSKRRLR L G  
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60

Query: 61 --PPI 62
            PP+
Sbjct: 61 DPPPV 65

[Close]

BLAST of Clc02G22270 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 109.4 bits (272), Expect = 1.4e-20
Identity = 56/66 (84.85%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQG-- 60
          ME ETAV AILGRLGRHCYAVLCLGVLLLTVA+VHYVGDGEPTDPRERSKRRLR L G  
Sbjct: 1  MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHGGR 60

Query: 61 --PPIR 63
            PP R
Sbjct: 61 DPPPPR 66

[Close]

BLAST of Clc02G22270 vs. NCBI nr
Match: VVA31225.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-11
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPPIR 63
          +LG+LGR CYAVLCLGV++L V LV+YVG  E  DP ER++RRLRA+ GPP+R
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

[Close]

BLAST of Clc02G22270 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-24
Identity = 61/75 (81.33%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPP 60
          MEAETA+AAILGRLGRHCYAVLCLGVLLLTVA+VHYVGDGEPTDPRER+KRRLR L G  
Sbjct: 1  MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 61 IRGGDGGRLPHAVVN 76
          I G D  R   AVVN
Sbjct: 61 ILGEDAARQLPAVVN 75

[Close]

BLAST of Clc02G22270 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.3e-11
Identity = 35/53 (66.04%), Postives = 44/53 (83.02%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPPIR 63
          +LG+LGR CYAVLCLGV++L V LV+YVG  E  DP ER++RRLRA+ GPP+R
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

[Close]

BLAST of Clc02G22270 vs. ExPASy TrEMBL
Match: A0A6J5XGV1 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPPIR 63
          +LG+LGR CYAVLCLGV+LL V L +YVG  E  DP ER++RRLRA+ GPP R
Sbjct: 7  LLGKLGRQCYAVLCLGVILLAVTLANYVGAEEQEDPMERTRRRLRAIHGPPFR 59

[Close]

BLAST of Clc02G22270 vs. ExPASy TrEMBL
Match: A0A6J5V5Y0 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS36475 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-11
Identity = 35/53 (66.04%), Postives = 42/53 (79.25%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPPIR 63
          +LG+LGR CYAVLCLGV+LL V L +YVG  E  DP ER++RRLRA+ GPP R
Sbjct: 7  LLGKLGRQCYAVLCLGVILLAVTLANYVGAEEQEDPMERTRRRLRAIHGPPFR 59

[Close]

BLAST of Clc02G22270 vs. ExPASy TrEMBL
Match: A0A251NMS2 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.5e-11
Identity = 34/51 (66.67%), Postives = 42/51 (82.35%), Query Frame = 0


Query: 10 ILGRLGRHCYAVLCLGVLLLTVALVHYVGDGEPTDPRERSKRRLRALQGPP 61
          +LG+LGR CYAVLCLGV++L V LV+YVG  E  DP ER++RRLRA+ GPP
Sbjct: 7  LLGKLGRQCYAVLCLGVIILAVTLVNYVGTEEQKDPMERTRRRLRAIHGPP 57

The following BLAST results are available for this feature:

BLAST of Clc02G22270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647058.1	7.6e-22	86.15	hypothetical protein Csa_023003, partial [Cucumis sativus]	[more]
KAG7010620.1	8.4e-21	84.62	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_023512260.1	8.4e-21	84.62	syntaxin-71-like [Cucurbita pepo subsp. pepo]	[more]
KAG6570773.1	1.4e-20	84.85	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
VVA31225.1	2.7e-11	66.04	Hypothetical predicted protein [Prunus dulcis]	[more]

BLAST of Clc02G22270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G22270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC65	5.1e-24	81.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1	[more]
A0A5E4FUM3	1.3e-11	66.04	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1	[more]
A0A6J5XGV1	3.8e-11	66.04	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS35900 PE=...	[more]
A0A6J5V5Y0	3.8e-11	66.04	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS36475 PE=4 S...	[more]
A0A251NMS2	8.5e-11	66.67	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_6G098100 PE=4 SV=1	[more]

BLAST of Clc02G22270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G22270.1	Clc02G22270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0045490	pectin catabolic process
biological_process	GO:0009607	response to biotic stimulus
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0030599	pectinesterase activity