Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCAGAGATTTTTGAGTTCGTTCCGAGCAACAACTGATGATCATTGCAGCATAATGATCTTCAGCAGTCCAACACAAGAACCACAAGGAAGACGCTCTCCAGCAAGAAGATTATCATCAATAATGGACGATTCCAACGACGGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAGGAGAGATCACAATTCGAGCTACAGATTTGCCGAGAGATGGATTCATCTGGTTCCTTTGATTCTGCTCCTCATCCTCTTCTTTCTCTGGTGGTCCTCTTATCCAGGTAAATTTCCTCAAGAATAATCTCATCCGCTTGACAATCCGTTTCTGTTTCTTCTTGCATATGTGATTTGGTAGTTCCTTTAGTTTCCCTTCCGATTTTGTTTATATCCAGGTAAATTTCTTCACGAATTCATTACAAGAACAATCCGTTTCTGATTTCTTCTGCTTCTCAGACGCATTCGCGTAATTTTCTTCAATCGATTAATCTCATCCACTTTGCATATGTGATTTGGTAGTTTCTTTTACTTCCGATTTTGTTTTTAACAAGAATTTTTTGAAGTATTGCTTTAATTCTAGTTCCTACTGTTTTCTTCGATTCTCTTTTTCTTAATTTCATCTTGCTGTTTCTTGCCTCCTCTGTTGTTGATCAGTAATTTCTAAATCGATTTGCTAATATTTGTGCTCTTTTTTCATACGAATGCAGTGAATTTGGTGATCAAGGATGGAGGAATTAGCGCAGTTCATGCAAGCGATCAGTTTCCGGAGGCGCCGAAGTACTTTGATCATGTCGAACTTGCCGTCTTAGGAGATGCCGAAATGCAGATTGCTTCGAGTCCTTTGAATCTAACCAGCGTTGGTGATCGAGATTTACGAATACCGAGTAAGGTCGATTGA
mRNA sequence
ATGCAGCAGAGATTTTTGAGTTCGTTCCGAGCAACAACTGATGATCATTGCAGCATAATGATCTTCAGCAGTCCAACACAAGAACCACAAGGAAGACGCTCTCCAGCAAGAAGATTATCATCAATAATGGACGATTCCAACGACGGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAGGAGAGATCACAATTCGAGCTACAGATTTGCCGAGAGATGGATTCATCTGGTTCCTTTGATTCTGCTCCTCATCCTCTTCTTTCTCTGGTGGTCCTCTTATCCAGTGAATTTGGTGATCAAGGATGGAGGAATTAGCGCAGTTCATGCAAGCGATCAGTTTCCGGAGGCGCCGAAGTACTTTGATCATGTCGAACTTGCCGTCTTAGGAGATGCCGAAATGCAGATTGCTTCGAGTCCTTTGAATCTAACCAGCGTTGGTGATCGAGATTTACGAATACCGAGTAAGGTCGATTGA
Coding sequence (CDS)
ATGCAGCAGAGATTTTTGAGTTCGTTCCGAGCAACAACTGATGATCATTGCAGCATAATGATCTTCAGCAGTCCAACACAAGAACCACAAGGAAGACGCTCTCCAGCAAGAAGATTATCATCAATAATGGACGATTCCAACGACGGTCTTCTTCCAATTTCCGATCCTCGTTTCAGCACAAGGAGGAGAGATCACAATTCGAGCTACAGATTTGCCGAGAGATGGATTCATCTGGTTCCTTTGATTCTGCTCCTCATCCTCTTCTTTCTCTGGTGGTCCTCTTATCCAGTGAATTTGGTGATCAAGGATGGAGGAATTAGCGCAGTTCATGCAAGCGATCAGTTTCCGGAGGCGCCGAAGTACTTTGATCATGTCGAACTTGCCGTCTTAGGAGATGCCGAAATGCAGATTGCTTCGAGTCCTTTGAATCTAACCAGCGTTGGTGATCGAGATTTACGAATACCGAGTAAGGTCGATTGA
Protein sequence
MQQRFLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRFSTRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEAPKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSKVD
Homology
BLAST of Clc02G21895 vs. NCBI nr
Match:
XP_038902298.1 (uncharacterized protein LOC120088933 [Benincasa hispida])
HSP 1 Score: 273.9 bits (699), Expect = 9.0e-70
Identity = 134/160 (83.75%), Postives = 146/160 (91.25%), Query Frame = 0
Query: 1 MQQRFLSSFRATTD-DHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRFS 60
MQQR LSSFRAT D DHC+IMIFS+PTQEP+GRRSP R S +MDDSN GLLPISDPRFS
Sbjct: 1 MQQRALSSFRATNDHDHCNIMIFSTPTQEPRGRRSPPSRSSILMDDSNAGLLPISDPRFS 60
Query: 61 TRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEAP 120
T++RDHNS YRFAERWIHL+PLILLLILF LWWSSYPVN+VIKDG ISAV+ +DQFPEAP
Sbjct: 61 TKKRDHNSRYRFAERWIHLIPLILLLILFILWWSSYPVNMVIKDGAISAVYTNDQFPEAP 120
Query: 121 KYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSKVD 160
KY DHVELAVLGDA MQIASSPLN+TS+GDRDLRIPSKVD
Sbjct: 121 KYIDHVELAVLGDAGMQIASSPLNVTSIGDRDLRIPSKVD 160
BLAST of Clc02G21895 vs. NCBI nr
Match:
XP_022986954.1 (uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima])
HSP 1 Score: 221.1 bits (562), Expect = 6.9e-54
Identity = 118/159 (74.21%), Postives = 130/159 (81.76%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSK 158
PKY DHVELA+LGDA MQIASSPLNLTSVG RDLR P+K
Sbjct: 121 PKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPAK 151
BLAST of Clc02G21895 vs. NCBI nr
Match:
KAG7010594.1 (hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 219.2 bits (557), Expect = 2.6e-53
Identity = 117/161 (72.67%), Postives = 130/161 (80.75%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI SP QEPQGR SP R MDDS+ +LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSINF--SPAQEPQGRCSPEIR---SMDDSSGSILPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSKVD 160
PKY DHVELA+LG A MQIASSPLNLTSVG RDLR P K++
Sbjct: 121 PKYIDHVELAILGGAGMQIASSPLNLTSVGARDLRTPGKIN 153
BLAST of Clc02G21895 vs. NCBI nr
Match:
XP_023512016.1 (uncharacterized protein LOC111776853 isoform X2 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 218.8 bits (556), Expect = 3.4e-53
Identity = 116/159 (72.96%), Postives = 129/159 (81.13%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ +LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPETR---SMDDSSGSILPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVI DGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVINDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSK 158
PKY DHVELA+LGDA M IASSPLNLTSVG RDLR P+K
Sbjct: 121 PKYIDHVELAILGDAGMHIASSPLNLTSVGARDLRTPAK 151
BLAST of Clc02G21895 vs. NCBI nr
Match:
XP_022986953.1 (uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima])
HSP 1 Score: 218.8 bits (556), Expect = 3.4e-53
Identity = 117/157 (74.52%), Postives = 128/157 (81.53%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIP 156
PKY DHVELA+LGDA MQIASSPLNLTSVG RDLR P
Sbjct: 121 PKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTP 149
BLAST of Clc02G21895 vs. ExPASy TrEMBL
Match:
A0A6J1JHI4 (uncharacterized protein LOC111484535 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484535 PE=4 SV=1)
HSP 1 Score: 221.1 bits (562), Expect = 3.3e-54
Identity = 118/159 (74.21%), Postives = 130/159 (81.76%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSK 158
PKY DHVELA+LGDA MQIASSPLNLTSVG RDLR P+K
Sbjct: 121 PKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTPAK 151
BLAST of Clc02G21895 vs. ExPASy TrEMBL
Match:
A0A6J1JI18 (uncharacterized protein LOC111484535 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484535 PE=4 SV=1)
HSP 1 Score: 218.8 bits (556), Expect = 1.7e-53
Identity = 117/157 (74.52%), Postives = 128/157 (81.53%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSFLPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIP 156
PKY DHVELA+LGDA MQIASSPLNLTSVG RDLR P
Sbjct: 121 PKYIDHVELAILGDAGMQIASSPLNLTSVGARDLRTP 149
BLAST of Clc02G21895 vs. ExPASy TrEMBL
Match:
A0A6J1FUE4 (uncharacterized protein LOC111448884 OS=Cucurbita moschata OX=3662 GN=LOC111448884 PE=4 SV=1)
HSP 1 Score: 214.5 bits (545), Expect = 3.1e-52
Identity = 115/160 (71.88%), Postives = 128/160 (80.00%), Query Frame = 0
Query: 1 MQQR--FLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDDSNDGLLPISDPRF 60
MQQR SSFRATTDDHCSI+ SP QEPQGR SP R MDDS+ +LP+SDP
Sbjct: 1 MQQRSSTSSSFRATTDDHCSIIF--SPAQEPQGRCSPEIR---SMDDSSGSILPVSDP-- 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RDHNS Y+F+ERWIHL+PLILLL+LF LWWSSYPVNLVIKDGGI AV+AS +FPEA
Sbjct: 61 SCRKRDHNSRYKFSERWIHLIPLILLLVLFILWWSSYPVNLVIKDGGIKAVYAS-EFPEA 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLRIPSKV 159
PKY DHVELA+L A MQIASSPLNLTSVG RDL P K+
Sbjct: 121 PKYIDHVELAILRGAGMQIASSPLNLTSVGTRDLWTPGKI 152
BLAST of Clc02G21895 vs. ExPASy TrEMBL
Match:
A0A5D3CTN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84G00940 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 8.2e-45
Identity = 107/162 (66.05%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 1 MQQRFLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDD--SNDGLLPISDPRF 60
MQQR +FR TTD+HCS+MI S+ ++EPQG R SS+ DD + LLPISDPRF
Sbjct: 1 MQQR---AFRPTTDNHCSVMI-STTSREPQGIR------SSMEDDFTAAGDLLPISDPRF 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RD NS YRF WIHL+PLILLLILF LWWSSYP VIKDGGI A + ++ PE
Sbjct: 61 SIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYP---VIKDGGIRADYEKERLPEV 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLR-IPSKVD 160
PKY DH ELAVLGDA M IASSPLNLTSVGDRD R IPSK+D
Sbjct: 121 PKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRIIPSKID 149
BLAST of Clc02G21895 vs. ExPASy TrEMBL
Match:
A0A1S3CKP4 (uncharacterized protein LOC103501898 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103501898 PE=4 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 8.2e-45
Identity = 107/162 (66.05%), Postives = 121/162 (74.69%), Query Frame = 0
Query: 1 MQQRFLSSFRATTDDHCSIMIFSSPTQEPQGRRSPARRLSSIMDD--SNDGLLPISDPRF 60
MQQR +FR TTD+HCS+MI S+ ++EPQG R SS+ DD + LLPISDPRF
Sbjct: 1 MQQR---AFRPTTDNHCSVMI-STTSREPQGIR------SSMEDDFTAAGDLLPISDPRF 60
Query: 61 STRRRDHNSSYRFAERWIHLVPLILLLILFFLWWSSYPVNLVIKDGGISAVHASDQFPEA 120
S R+RD NS YRF WIHL+PLILLLILF LWWSSYP VIKDGGI A + ++ PE
Sbjct: 61 SIRKRDRNSRYRFHVHWIHLIPLILLLILFILWWSSYP---VIKDGGIRADYEKERLPEV 120
Query: 121 PKYFDHVELAVLGDAEMQIASSPLNLTSVGDRDLR-IPSKVD 160
PKY DH ELAVLGDA M IASSPLNLTSVGDRD R IPSK+D
Sbjct: 121 PKYVDHTELAVLGDAGMHIASSPLNLTSVGDRDSRIIPSKID 149
BLAST of Clc02G21895 vs. TAIR 10
Match:
AT4G16840.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35658.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 51.6 bits (122), Expect = 6.7e-07
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 0
Query: 29 PQGRRSPARRLS-SIMDDSNDGLLPISDPRFSTRRRDHNSSYRFAERWIHLVPLILLLIL 88
P RSP R S + M+D + LLP DP +R+ S +RF+E IHL+PLILLL +
Sbjct: 15 PATSRSPPRSQSVTAMEDDVELLLPRYDPNSQAGKRE-KSRFRFSENVIHLIPLILLLCV 74
Query: 89 FFLWWSSYPVNL 100
LW SSY L
Sbjct: 75 AILWLSSYSAAL 85
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_038902298.1 | 9.0e-70 | 83.75 | uncharacterized protein LOC120088933 [Benincasa hispida] | [more] |
XP_022986954.1 | 6.9e-54 | 74.21 | uncharacterized protein LOC111484535 isoform X2 [Cucurbita maxima] | [more] |
KAG7010594.1 | 2.6e-53 | 72.67 | hypothetical protein SDJN02_27388, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_023512016.1 | 3.4e-53 | 72.96 | uncharacterized protein LOC111776853 isoform X2 [Cucurbita pepo subsp. pepo] | [more] |
XP_022986953.1 | 3.4e-53 | 74.52 | uncharacterized protein LOC111484535 isoform X1 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1JHI4 | 3.3e-54 | 74.21 | uncharacterized protein LOC111484535 isoform X2 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1JI18 | 1.7e-53 | 74.52 | uncharacterized protein LOC111484535 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... | [more] |
A0A6J1FUE4 | 3.1e-52 | 71.88 | uncharacterized protein LOC111448884 OS=Cucurbita moschata OX=3662 GN=LOC1114488... | [more] |
A0A5D3CTN8 | 8.2e-45 | 66.05 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3CKP4 | 8.2e-45 | 66.05 | uncharacterized protein LOC103501898 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
Match Name | E-value | Identity | Description | |
AT4G16840.1 | 6.7e-07 | 45.83 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |