Clc02G21060 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G21060
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionTropomyosin
LocationClcChr02: 33427738 .. 33428055 (+)
RNA-Seq ExpressionClc02G21060
SyntenyClc02G21060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG

mRNA sequence

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG

Coding sequence (CDS)

ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG

Protein sequence

MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD
Homology
BLAST of Clc02G21060 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGG 105
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG G
Sbjct: 493 ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

BLAST of Clc02G21060 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGG 105
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG G
Sbjct: 523 ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

BLAST of Clc02G21060 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28
Identity = 89/106 (83.96%), Postives = 90/106 (84.91%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDA 60
           MESSKICFCIPRHKN HK DGG EKSSKSK SR KS  GAK GKHSSSSDSSGNGNTGDA
Sbjct: 57  MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGDA 116

Query: 61  SAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGGGGGGGD 106
           SA  SAA  AVAA+AVTAVT DA D DDGGSTH HGGEGGGGGGGD
Sbjct: 117 SAAGSAA--AVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 158

BLAST of Clc02G21060 vs. NCBI nr
Match: KAG6570682.1 (hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27
Identity = 88/106 (83.02%), Postives = 89/106 (83.96%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDA 60
           MESSKICFCIPRHKN HK DGG EKSSKSK SR KS  GAK GKHSSSSDSSGNGNTG A
Sbjct: 125 MESSKICFCIPRHKNSHKVDGGSEKSSKSKPSRRKS--GAKEGKHSSSSDSSGNGNTGAA 184

Query: 61  SAGSSAAATAVAAVAVTAVTTDAFD-DDGGSTHAHGGEGGGGGGGD 106
           SA  SAA  AVAA+AVTAVT DA D DDGGSTH HGGEGGGGGGGD
Sbjct: 185 SAAGSAA--AVAAIAVTAVTMDAVDEDDGGSTHVHGGEGGGGGGGD 226

BLAST of Clc02G21060 vs. NCBI nr
Match: KAE8645885.1 (hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical protein Csa_020675 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 8.1e-27
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KS + +K GKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD 106
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG G GGD
Sbjct: 64  ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A
Sbjct: 433 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 492

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGG 105
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG G
Sbjct: 493 ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 531

BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29
Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KSR+G+K GKHSS SDSSGNGN+GDA A
Sbjct: 463 SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSRRGSKEGKHSSGSDSSGNGNSGDAGA 522

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGG 105
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG GG G
Sbjct: 523 ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGGAG 561

BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.9e-27
Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0

Query: 3   SSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASA 62
           SSKICFCIPRHKNGHKADGG EKSSKSK SR KS + +K GKHSSSSDSSGNGN G+  A
Sbjct: 4   SSKICFCIPRHKNGHKADGGSEKSSKSKPSRRKSHRDSKEGKHSSSSDSSGNGNAGEECA 63

Query: 63  GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD 106
              A+ATAVAAVAVTAVT DA DDDGGSTH HGGEGG G GGD
Sbjct: 64  ---ASATAVAAVAVTAVTMDALDDDGGSTHVHGGEGGSGAGGD 103

BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23
Identity = 77/108 (71.30%), Postives = 84/108 (77.78%), Query Frame = 0

Query: 1   MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDA 60
           MES+KICFCIPRHKNGHKA+GG EKSSKSK SR KSR+G KGGKHSSSSDSSG+GNT   
Sbjct: 1   MESTKICFCIPRHKNGHKANGGSEKSSKSKPSRRKSRRGEKGGKHSSSSDSSGDGNTNTG 60

Query: 61  SA---GSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD 106
           +A   GS AA  AV  +  TA T DA +DDGGS H HGG GG GGGGD
Sbjct: 61  AAAGGGSDAAVAAVVVMGTTAATMDAVEDDGGSAHGHGG-GGEGGGGD 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK15390.11.5e-2882.35tropomyosin [Cucumis melo var. makuwa][more]
KAA0061866.11.5e-2882.35tropomyosin [Cucumis melo var. makuwa][more]
KAG7010529.13.3e-2883.96hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6570682.12.8e-2783.02hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAE8645885.18.1e-2779.61hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CVK17.1e-2982.35Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE... [more]
A0A5A7V5U97.1e-2982.35Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE... [more]
A0A0A0KFD03.9e-2779.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1[more]
A0A6J1D5151.5e-2371.30circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..70
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 83..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G21060.1Clc02G21060.1mRNA