Clc02G21060 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG ATGGAGTCCTCAAAGATTTGTTTCTGTATTCCTCGCCACAAAAATGGCCACAAAGCTGATGGAGGATTGGAGAAATCTTCCAAATCAAAGTCTTCTCGCTGCAAATCTCGCCAAGGCGCAAAAGGAGGTAAGCATTCCTCTAGTAGTGATAGTAGTGGAAATGGAAACACAGGTGATGCAAGTGCAGGCAGCAGCGCTGCCGCCACTGCCGTGGCTGCTGTTGCTGTCACGGCAGTGACCACGGATGCCTTTGATGATGACGGTGGCAGCACCCATGCCCACGGTGGTGAGGGAGGCGGTGGGGGTGGTGGAGATTAG MESSKICFCIPRHKNGHKADGGLEKSSKSKSSRCKSRQGAKGGKHSSSSDSSGNGNTGDASAGSSAAATAVAAVAVTAVTTDAFDDDGGSTHAHGGEGGGGGGGD Homology
BLAST of Clc02G21060 vs. NCBI nr
Match: TYK15390.1 (tropomyosin [Cucumis melo var. makuwa]) HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28 Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Clc02G21060 vs. NCBI nr
Match: KAA0061866.1 (tropomyosin [Cucumis melo var. makuwa]) HSP 1 Score: 136.3 bits (342), Expect = 1.5e-28 Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Clc02G21060 vs. NCBI nr
Match: KAG7010529.1 (hypothetical protein SDJN02_27323, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 135.2 bits (339), Expect = 3.3e-28 Identity = 89/106 (83.96%), Postives = 90/106 (84.91%), Query Frame = 0
BLAST of Clc02G21060 vs. NCBI nr
Match: KAG6570682.1 (hypothetical protein SDJN03_29597, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 132.1 bits (331), Expect = 2.8e-27 Identity = 88/106 (83.02%), Postives = 89/106 (83.96%), Query Frame = 0
BLAST of Clc02G21060 vs. NCBI nr
Match: KAE8645885.1 (hypothetical protein Csa_017706 [Cucumis sativus] >KGN47122.1 hypothetical protein Csa_020675 [Cucumis sativus]) HSP 1 Score: 130.6 bits (327), Expect = 8.1e-27 Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A5D3CVK1 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00300 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29 Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A5A7V5U9 (Tropomyosin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G001080 PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 7.1e-29 Identity = 84/102 (82.35%), Postives = 88/102 (86.27%), Query Frame = 0
BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A0A0KFD0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188150 PE=4 SV=1) HSP 1 Score: 130.6 bits (327), Expect = 3.9e-27 Identity = 82/103 (79.61%), Postives = 86/103 (83.50%), Query Frame = 0
BLAST of Clc02G21060 vs. ExPASy TrEMBL
Match: A0A6J1D515 (circumsporozoite protein-like OS=Momordica charantia OX=3673 GN=LOC111017006 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.5e-23 Identity = 77/108 (71.30%), Postives = 84/108 (77.78%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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