Clc02G21010 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G21010
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mitochondrial 28S Ribosomal protein
Location	ClcChr02: 33382392 .. 33384392 (+)
RNA-Seq Expression	Clc02G21010
Synteny	Clc02G21010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTCTTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAACAATCTCCCTCTATAGTCTGCCGAAATTTTGAAAAAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATTGAACGGGTTGAGGGTTTTAAAGGTTTTGTTTCGGGTAAAAGATCAGCGGGATTGCTTGATTTCTGTAATCGTTTACTGAAATTTATTTTGCTTTAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCTTTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGAAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCTCATCAATCGAATCACTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTAAAGAGATATATTCATAGATAAGAAAAAGAAAAAATGTGAACGATGATTGGATTGATGATAAAATCGAATGTTGGGGCTCGAACAGTGATTAGATTGATGATAAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACAGGAAAAAGGAGGAATTTCATTTAGTTTTTCATTTCTCCATGTTGCTGAAATTTTGTTCTGATATTTGTATAGAAGAATGAGCAACAGTTGAATCTCTTATATGATCTTTTCACACAGGCTAAATTCTATAATTTGGGACCGTGACATCAAGAAATAATGCTTTATAGTTGATTTAGATGCGTGACTGGGAAAAATGAAAGTACGAACATTATTCAATATTCACTATTTACTAATCTTCGCACTTGGTGTATATGATTATGTTTCATCACAAGCCTTGTATGAGAACCATTCTGTTTTTAGCTTTCCTTGTTTCCTCTCTATTTCTGAATTATTATTTTCACATTTCTTAAAGAAATATTTGAATTCTTCGTTAAATTCTAAAATCAAAAATAAGTTTTTGAAAATTACTTTTTTTAGTTTTCAAATCTTAGCTTGGTTTTTGAAAATATTGGTAAAAAGTAGATAACAAAACAAAGAAACTTACAGGTGAAAGTATCGTTTATGAGCTTAATCTTTAAAAATTAAATAGTTATCCAGAGGGACTTTAGTTATTGTATTCTTATAAATAGTTTGCAAGTATTCAAGTTTGTACTTTTGAGGCATGAGGTCCTGAAAGCTTAAGCTGGGTTAGGTCAAGTAACTTAGCCCCCTTTAGAAGTCTTTACTGAGGCAACTCTGGACTTGGTAATTGATATAGCCAACCCTTGTTAAGTTGCTTCAAATGAATGTTAAAATTCCCTTTTGAAGTCTCTATTGAGGCAACTCCGGACATGGTAATTGATATAGTCAACCATTATTGTATTGCTTCAAATGAATGTTCAAATTTGAGCTTGTATCGACTTAAATTTCTATATGTTATTGCTGCTTTTTGCAATCTACTTTCATCAATGATGGAGGTTGAACAATGTTACAAAAATTTTCCAGGCACACCCATTGCCGAAGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCATGA

mRNA sequence

ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTCTTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAACAATCTCCCTCTATAGTCTGCCGAAATTTTGAAAAAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATTGAACGGGTTGAGGGTTTTAAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCTTTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGAAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCTCATCAATCGAATCACTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGAAGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCATGA

Coding sequence (CDS)

ATGCCAATGGCTGTCGCCAACAGAACTGCCATCACTCGAGCCCTAGATTTCTCCAGGTTTTCTTCTACTTTTATCAGAAGCTTCAGCACCTCTTCGCCGTCGACCTCCTCTTCAAACCCCAATGCCTCGCCTGCTTCGAGTAAAAACAAACGGAGGAAGAAGAAGAACCTGTTCGAAGTAGCTCAGTTTTTGCCCAATTGGGGAGTAGGATACCATGTCGCCAAAGCTCACTGGGATGAAATATCGTACCAGATCACCAAAATCAATCTGTACAAGGTTTGTTTTCATTTGGTTTCTTTTATTAGATGTATGTTGCGGTTCATTGGAGAACAATCTCCCTCTATAGTCTGCCGAAATTTTGAAAAAAATGGTATTCAGTTTCTTCCAGTCGTTACCATTTCTTGTATGCATTCAAGTAAATTGAACGGGTTGAGGGTTTTAAAGACTTTGGGGGCGTTTGACATCTTTCCTATGACAATTGATAATCAAACAGGAAGTGTAACAATCTATTTTCTTTTGGGTCAATCTGATTCAGGGTGTAAGTTTTTCTTTTGGCTTTTTTCTTACAGAGTGGCACGCACGGCAAGGCTTGGGGTGTTGCTCACAAAAATGGTTAGTGATTATATATCAAAAATGAAATATCAATCTCATCGATCTCATAAGTATCATACCAAATCTCATCAATCGAATCACTTTTTCGAGAAATACGAGATATCTAAGTCATACAAGTCAAGTAACTTAGCCCCCTTTAGAAGCACACCCATTGCCGAAGCTCCAAAGAAAATTAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCGCTAGCTTGCCGAGTTTGGGAGAAAGCAAAAGTAACCCATCAGCTGAAGTTCAAACTTCATGA

Protein sequence

MPMAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFEKNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS

Homology

[Close]

BLAST of Clc02G21010 vs. NCBI nr
Match: XP_038900676.1 (uncharacterized protein LOC120087826 [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-36
Identity = 125/290 (43.10%), Postives = 130/290 (44.83%), Query Frame = 0


Query: 5   VANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVAQF 64
           VANRTAI+RALDFSR SSTFIR+FSTSSPSTSSSNPNAS AS+KNKRR KKKNLFEV QF
Sbjct: 4   VANRTAISRALDFSRLSSTFIRTFSTSSPSTSSSNPNASTASTKNKRRKKKKNLFEVVQF 63

Query: 65  LPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFEKN 124
           LPNWGVGYHVAKAHWDEISYQITKINLYK                               
Sbjct: 64  LPNWGVGYHVAKAHWDEISYQITKINLYK------------------------------- 123

Query: 125 GIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCKFF 184
                             NG     T G                                
Sbjct: 124 ------------------NG-----THG-------------------------------- 146

Query: 185 FWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKSYK 244
                                                                      K
Sbjct: 184 -----------------------------------------------------------K 146

Query: 245 SSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
           +  +A    TPIAEAPKKISGVHKRCWKYIASLP  GE  SNPSAEVQTS
Sbjct: 244 AWGIAHKDGTPIAEAPKKISGVHKRCWKYIASLPRSGE--SNPSAEVQTS 146

[Close]

BLAST of Clc02G21010 vs. NCBI nr
Match: XP_004143137.1 (uncharacterized protein LOC101207989 [Cucumis sativus] >KGN47116.1 hypothetical protein Csa_020646 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.9e-34
Identity = 117/292 (40.07%), Postives = 127/292 (43.49%), Query Frame = 0


Query: 3   MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
           MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV 
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 63  QFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFE 122
           QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H                         
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTH------------------------- 120

Query: 123 KNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 145

Query: 183 FFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKS 242
                                                                       
Sbjct: 181 ------------------------------------------------------------ 145

Query: 243 YKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
            K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Sbjct: 241 GKAWGIAHKNGTPIVEAPKKISGVHKRCWKYIASLPHSGESKT--SAEVQTS 145

[Close]

BLAST of Clc02G21010 vs. NCBI nr
Match: XP_008464074.1 (PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo] >KAA0061862.1 uncharacterized protein E6C27_scaffold89G001010 [Cucumis melo var. makuwa] >TYK15394.1 uncharacterized protein E5676_scaffold571G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 156.0 bits (393), Expect = 5.0e-34
Identity = 117/292 (40.07%), Postives = 128/292 (43.84%), Query Frame = 0


Query: 3   MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
           MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV 
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 63  QFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFE 122
           QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H                         
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTH------------------------- 120

Query: 123 KNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 145

Query: 183 FFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKS 242
                                                                       
Sbjct: 181 ------------------------------------------------------------ 145

Query: 243 YKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
            K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Sbjct: 241 GKAWGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKT--SAEVQTS 145

[Close]

BLAST of Clc02G21010 vs. NCBI nr
Match: XP_022148301.1 (uncharacterized protein LOC111016988 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 6.1e-32
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 3  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
          M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEV 
Sbjct: 1  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVV 60

Query: 63 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          QFLP WGVGYHVAKAHWDEISYQITKINLYK
Sbjct: 61 QFLPKWGVGYHVAKAHWDEISYQITKINLYK 91

[Close]

BLAST of Clc02G21010 vs. NCBI nr
Match: XP_023007567.1 (uncharacterized protein LOC111500023 [Cucurbita maxima])

HSP 1 Score: 144.8 bits (364), Expect = 1.2e-30
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 3  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
          MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV 
Sbjct: 1  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 63 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Sbjct: 61 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 91

[Close]

BLAST of Clc02G21010 vs. ExPASy TrEMBL
Match: A0A0A0KH76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 117/292 (40.07%), Postives = 127/292 (43.49%), Query Frame = 0


Query: 3   MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
           MAVANRTAI+RALDFSR SS+F+R+FS+SSPSTSSSNPNASP SS+ KRR KKKNLFEV 
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 63  QFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFE 122
           QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H                         
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTH------------------------- 120

Query: 123 KNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 145

Query: 183 FFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKS 242
                                                                       
Sbjct: 181 ------------------------------------------------------------ 145

Query: 243 YKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
            K+  +A    TPI EAPKKISGVHKRCWKYIASLP  GESK+  SAEVQTS
Sbjct: 241 GKAWGIAHKNGTPIVEAPKKISGVHKRCWKYIASLPHSGESKT--SAEVQTS 145

[Close]

BLAST of Clc02G21010 vs. ExPASy TrEMBL
Match: A0A5A7V0Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00360 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 117/292 (40.07%), Postives = 128/292 (43.84%), Query Frame = 0


Query: 3   MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
           MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV 
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 63  QFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFE 122
           QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H                         
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTH------------------------- 120

Query: 123 KNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 145

Query: 183 FFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKS 242
                                                                       
Sbjct: 181 ------------------------------------------------------------ 145

Query: 243 YKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
            K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Sbjct: 241 GKAWGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKT--SAEVQTS 145

[Close]

BLAST of Clc02G21010 vs. ExPASy TrEMBL
Match: A0A1S3CKN2 (uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-34
Identity = 117/292 (40.07%), Postives = 128/292 (43.84%), Query Frame = 0


Query: 3   MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
           MAVANRTAI+RALDFSR SS+FIR+F++SSPSTSSSNPNASP+SS+ KRR KKKNLFEV 
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 63  QFLPNWGVGYHVAKAHWDEISYQITKINLYKVCFHLVSFIRCMLRFIGEQSPSIVCRNFE 122
           QFLPNWGVGYHVAK+HWDEISYQITKINLYK   H                         
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTH------------------------- 120

Query: 123 KNGIQFLPVVTISCMHSSKLNGLRVLKTLGAFDIFPMTIDNQTGSVTIYFLLGQSDSGCK 182
                                                                       
Sbjct: 121 ------------------------------------------------------------ 145

Query: 183 FFFWLFSYRVARTARLGVLLTKMVSDYISKMKYQSHRSHKYHTKSHQSNHFFEKYEISKS 242
                                                                       
Sbjct: 181 ------------------------------------------------------------ 145

Query: 243 YKSSNLAPFRSTPIAEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
            K+  +A     PI EAPKKISGVHKRCWKYIASLP LGESK+  SAEVQTS
Sbjct: 241 GKAWGIAHKNGMPIVEAPKKISGVHKRCWKYIASLPRLGESKT--SAEVQTS 145

[Close]

BLAST of Clc02G21010 vs. ExPASy TrEMBL
Match: A0A6J1D4Z3 (uncharacterized protein LOC111016988 OS=Momordica charantia OX=3673 GN=LOC111016988 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.0e-32
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 3  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
          M+VANR AITRALDFS+ SSTFIR+FSTSSPSTSSSNPNAS ASS  KRR KKKNLFEV 
Sbjct: 1  MSVANRAAITRALDFSKLSSTFIRTFSTSSPSTSSSNPNASAASSSIKRRKKKKNLFEVV 60

Query: 63 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          QFLP WGVGYHVAKAHWDEISYQITKINLYK
Sbjct: 61 QFLPKWGVGYHVAKAHWDEISYQITKINLYK 91

[Close]

BLAST of Clc02G21010 vs. ExPASy TrEMBL
Match: A0A6J1KZ28 (uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.6e-31
Identity = 77/91 (84.62%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 3  MAVANRTAITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRR-KKKNLFEVA 62
          MAVANRT I+RALDFSR +S+FIR+FSTS+ STSSS+P+AS A+SKNKRR KKKNLFEV 
Sbjct: 1  MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 63 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          QFLPNWGVGYHVAKAHWDEISYQITKINLYK
Sbjct: 61 QFLPNWGVGYHVAKAHWDEISYQITKINLYK 91

[Close]

BLAST of Clc02G21010 vs. TAIR 10
Match: AT5G58990.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 93.2 bits (230), Expect = 3.7e-19
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1  MPMAVANRTAITRALDFSRF--SSTFIRSFSTSSPSTSSSNPNASPASSKN--KRRKKKN 60
          M M + NR AI+R      F  S + +R+FS ++PS +S+  + +P+S  N  KRRKKKN
Sbjct: 1  MAMTLMNR-AISRTETVGAFSLSLSLLRNFS-AAPSAASTPASENPSSDSNKPKRRKKKN 60

Query: 61 LFEVAQFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          L EVAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Sbjct: 61 LIEVAQFLPNWGIGYHMAKAHWNGISYEITKINLYK 94

HSP 2 Score: 46.6 bits (109), Expect = 4.0e-05
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 256 AEAPKKISGVHKRCWKYIASLPSLGESKSNP---SAEVQTS 294
           AEAPKKISGVHKRCWKYI +L     SK+ P   +A+VQ +
Sbjct: 113 AEAPKKISGVHKRCWKYIPNL-----SKTTPATTTADVQAA 148

[Close]

BLAST of Clc02G21010 vs. TAIR 10
Match: AT5G52370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-19
Identity = 53/93 (56.99%), Postives = 66/93 (70.97%), Query Frame = 0


Query: 1  MPMAVANRT-AITRALDFSRFSSTFIRSFSTSSPSTSSSNPNASPASSKNKRRKKKNLFE 60
          M M + NR  + T  +   R S   +R+FS    + +S NP++   SSK KRRKKKNL E
Sbjct: 1  MAMTLINRAISRTETVGAFRLSLNLLRNFSA---APASENPSSD--SSKPKRRKKKNLIE 60

Query: 61 VAQFLPNWGVGYHVAKAHWDEISYQITKINLYK 93
          VAQFLPNWG+GYH+AKAHW+ ISY+ITKINLYK
Sbjct: 61 VAQFLPNWGIGYHMAKAHWNGISYEITKINLYK 88

HSP 2 Score: 45.8 bits (107), Expect = 6.8e-05
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 0


Query: 256 AEAPKKISGVHKRCWKYIASLPSLGESKSNPSAEVQTS 294
           AEAPKKISGVHKRCWKYI +L     + +  SA VQ +
Sbjct: 107 AEAPKKISGVHKRCWKYIPNLSK--TAPATTSAHVQAA 142

The following BLAST results are available for this feature:

BLAST of Clc02G21010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900676.1	2.4e-36	43.10	uncharacterized protein LOC120087826 [Benincasa hispida]	[more]
XP_004143137.1	2.9e-34	40.07	uncharacterized protein LOC101207989 [Cucumis sativus] >KGN47116.1 hypothetical ...	[more]
XP_008464074.1	5.0e-34	40.07	PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo] >KAA0061862.1 unc...	[more]
XP_022148301.1	6.1e-32	87.91	uncharacterized protein LOC111016988 [Momordica charantia]	[more]
XP_023007567.1	1.2e-30	84.62	uncharacterized protein LOC111500023 [Cucurbita maxima]	[more]

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BLAST of Clc02G21010 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G21010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH76	1.4e-34	40.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1	[more]
A0A5A7V0Y6	2.4e-34	40.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKN2	2.4e-34	40.07	uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=...	[more]
A0A6J1D4Z3	3.0e-32	87.91	uncharacterized protein LOC111016988 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1KZ28	5.6e-31	84.62	uncharacterized protein LOC111500023 OS=Cucurbita maxima OX=3661 GN=LOC111500023...	[more]

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BLAST of Clc02G21010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58990.1	3.7e-19	57.29	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G52370.1	6.3e-19	56.99	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..52
None	No IPR available	PANTHER	PTHR35316	28S RIBOSOMAL S34 PROTEIN	coord: 4..93 coord: 253..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G21010.2	Clc02G21010.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome