Clc02G20890 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G20890
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L4
Location	ClcChr02: 33273413 .. 33276912 (+)
RNA-Seq Expression	Clc02G20890
Synteny	Clc02G20890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTATTATTTTAATGGGAATGGATACAAATTAAATTACTTAAAAGTGAAAAATATTTTATTTATTTTCTTCTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCTATCCGCAGAACTCAAAGAGCGGCTCAAAGCTCCTCCATCGCACCAACAATGGCGGCCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCTTTTCTTCCCCCAACCTTCAAAATTCCAAGCTCTTCTGCAATTTGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACCGGAGAAAAAGTCGGTGAAACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAGCCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTGGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTCGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGACGAAGAAGGTTGATTTTCTTGCCTTTCTCCAATTCAATTATTCAATTAAAGAAATGATAGACTGCTTTAAGAACATACATTATCGTTCCATACTTGAATTTTGTCTAATTCAAAATTGAAATCACATTACAGTGCCATCTTCTTATTGAATTCTTGATTTCTTAGATACCCTTTTATGATGGGGTGCCTTAGAATTATACTGTGAAATCTGGTTTTGGTTCTGTTTCTGTTAACATTTGCATTGTCATTTTGTATAATTGATTTTCATTCAGATTTCTTACATTCTTCGTTTTGTTTCATTTCTGTTAGAAATCTTAGAGGAGTAATCGAAATGGAAAGTTAATTCAGGATGGATATTTGACTCTCTTCACCTTAAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTGTTCTTGTTGTTAGCATAATTACTTTAAATCTATATTGAATAGATTGACCCTAGGATCATTCATGATCATTCACGCCAAATTGTCAAGAATAAATAACATACAGTATTTCCTCAACAAGGGATCTCTCTCAAGATGAGATTCAAGAAAGACTGAGTGCTTATTGTTTTGATGTATTGGGAACCATAGCCTAAGGTCTCTTTATATACTAGTTTAATTAGGGTTCCCATTAAACCCTAATCAATCTAGAAATAGACTTCTACCCATTAAATCAATTGGGAATCTAGGGAATTTAATTAAATAGATCACATAATAGTGTCCAATCTAATAAAATAAACCAATGTGATAAAATACTAATCTACATAGATAGCCTATATTTTAATTATATGTATTTTAATTTAAAATACGTCTAACATTTTTAACATTGCTCTTTCTTTCTGCTACTTACATTTTTTCACATAAAAGAACAATACAGAAATTGTAGACAGGTTTGATAACCATTTGGTTTTTAGTTTTTACTTTTTGAAAATTGCGGTTATAAACATTACTGTTTATATGTTTTGTTGTCTGGATTGTAAGAGCGTTTTCAAGATCAAAGCCAATTTTTTTAAGTTTTAAAAAATTAGTTTTCATAAACTTATTTTTGTTTTTGGAGGTGGGCTAAAAATTCAAATGTTTATATAGAAAATACGAGAACCATTGGTAAGAACTTGTAAGAAAACAAGCACAACTTTCAAAAACCAAAAACTAAAAATCAAATGATTACCCAATGGGACCGTAATTTTTCTATTAATGTTGTCTAATTTCTCTTCCCACTGTTTCACATCAAAATGGAGGAGTTATGGACGAACTTTCTCATTCGTGATGAAACGAAAGAGTCTTGTGGCAAGCTTGTTTTTCTGCTATCTTATGGGGAGTGTAGCTTGAGAGGAATAATAGAGATTCTAGGAAGTTGGAGAAGTCAATTGAAGAAGTGTGGGAGGTGGTGAGGTTTAATACATCATTATATACGTTCTTTAGTCGGACTTTCAGTAACTTTCGACTTTGTGTAATTCTTTTTGATTGGAATCCGTCTTTGAAGTTTGTTGTGGACTCATTTTATAGTCTTGCTTTTCGTATGCCCTTCTACGTTAACTCGGTTCCTTAACAGAAAAATGAAACACACATATTGAAGTTAATCGAGAGAGCGATTGTAGTTCTTCCACTAACGTCGTCTTCATTTTTTAAAACAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCGAAATCATGGAAGAAGGTTTCGGGGTATGTTAACTTTCAAGCTTTGAACACATTTTTTTTTTTCCTTTTTTGTTCTTGTACACATGAAAAGGTATTTTCTTGTCCCTTTTTCCTCTGATATCCTAAAGTGTTGTTAGCGGATGATATCTTCAAGAAGAATCTTTTATTCTTTCGGAACTTGCATCCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTACTATTTTAGCGTCTCCTATTGTCAATATAACATGTGGAAATGTTTAGAGAGAGAGAATTAGTTTTTAGGAGACCATCTTCTAAATCTTTGAGTTCCTTGAAAGTTTAATGTAGCAGAATTTGAATATCATCTCAGACTTTGCTCAAAACTACACTTCTGGAGTAAATTCAGGGTTGATTTCAATAGTTCTTTAACCAACTTGTAGGGGTGATCATCAGAATCCCCAAATTTTATTTTCTTGAGATCAACATGCTAGGTTGGGAGGCGGGGATTCAAATTTCTGACGTCGTGATTGAAAATACATGCCTAAACAATTTGTGCTCGGTTTGGTTAAGGTTAATGACACATTATTGCTTGTAAATTTCAGACGTGTAACACAAGATTGGCAGGCACATAAACTAGGTAGGTAATATTTAGAATGGTAATCAGTGTAGCTTGGTTCTTGAGTTATAATAGAGTTGTTTACTTGTTTGTACAGAGTTGGTGGTTTCTAAAATAATGACAATATTAGGCTAGTAACAACAACCCTATTCTTGTCATTACTTTACAAGTTATCCCATGCTTTTTATTATTTATT

mRNA sequence

AAATTATTATTTTAATGGGAATGGATACAAATTAAATTACTTAAAAGTGAAAAATATTTTATTTATTTTCTTCTTTGCCACTGATCTCCAGCGGGAGTGGATAACGAAGCTATCCGCAGAACTCAAAGAGCGGCTCAAAGCTCCTCCATCGCACCAACAATGGCGGCCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCTTTTCTTCCCCCAACCTTCAAAATTCCAAGCTCTTCTGCAATTTGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACCGGAGAAAAAGTCGGTGAAACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAGCCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTGGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTCGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGACGAAGAAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGATTCTGCCATGTCGAAATCATGGAAGAAGGTTTCGGGGTATGTTAACTTTCAAGCTTTGAACACATTTTTTTTTTTCCTTTTTTGTTCTTGTACACATGAAAAGGTATTTTCTTGTCCCTTTTTCCTCTGATATCCTAAAGTGTTGTTAGCGGATGATATCTTCAAGAAGAATCTTTTATTCTTTCGGAACTTGCATCCTGTTATGGCTTCCCTGTACTTTCTTCCCAAGTTAGGAGCTTCCATTACTATTTTAGCGTCTCCTATTGTCAATATAACATGTGGAAATGTTTAGAGAGAGAGAATTAGTTTTTAGGAGACCATCTTCTAAATCTTTGAGTTCCTTGAAAGTTTAATGTAGCAGAATTTGAATATCATCTCAGACTTTGCTCAAAACTACACTTCTGGAGTAAATTCAGGGTTGATTTCAATAGTTCTTTAACCAACTTGTAGGGGTGATCATCAGAATCCCCAAATTTTATTTTCTTGAGATCAACATGCTAGGTTGGGAGGCGGGGATTCAAATTTCTGACGTCGTGATTGAAAATACATGCCTAAACAATTTGTGCTCGGTTTGGTTAAGGTTAATGACACATTATTGCTTGTAAATTTCAGACGTGTAACACAAGATTGGCAGGCACATAAACTAGGTAGGTAATATTTAGAATGGTAATCAGTGTAGCTTGGTTCTTGAGTTATAATAGAGTTGTTTACTTGTTTGTACAGAGTTGGTGGTTTCTAAAATAATGACAATATTAGGCTAGTAACAACAACCCTATTCTTGTCATTACTTTACAAGTTATCCCATGCTTTTTATTATTTATT

Coding sequence (CDS)

ATGGCGGCCTCCACCACGCCATCGTCGCTCTCTTTCTTCACTTCATCGGTCTTCTTTTCTTCCCCCAACCTTCAAAATTCCAAGCTCTTCTGCAATTTGAAACCTAACTCCCTTAAACCCCAAACCAAACCCTTATCAATCTCCTCCGAGCTCGCTACTCTTCCAGTCCTCTCCTTCACCGGAGAAAAAGTCGGTGAAACCTACCTCGACCTCAAATCCGCTCCACCGGAAACCGCCCGCGCTGTCGTTCACCGAGCCATTATCACCGATCAACAGAACAAGCGCCGTGGGACCGCCTCGACTCTCACCAGAGCTGAGGTTAGTGGAGGCGGCAGAAAACCCTACCAGCAGAAGAAAACCGGGAAGGCTCGTCGCGGTTCGATGCGTACTCCTCTCCGGCCAGGTGGAGGGGTGGTCTTCGGGCCGAAGCCTAGAGATTGGTCAATTAAGATCAACAGAAAGGAGAAGAGACTGGCAATATCGACGGCGGTGGCTAGTGCGGCGGTTAATACGATAGTGGTGGAGGATTTTGGGGACAAGTTCGAGAAGCCGAAAACTAAAGAATTCATCGCTGCGTTGAAGAGATGGGGAATCGATCCAAAGGAGAAATCATTGTTCTTAATGACGGAGGTTTCTGATAATGTCCGACTATCTAGCCGTAATATTGGAACGTTGAAGTTGTTGACGCCGAGGACGCTGAATTTGTTCGATATTTTGGATTCCGATAAGTTGGTTTTGACGCCGGCGGCGGTAGAATATCTGAATGAGAGATATGGAATTAATTACGAAGAAGGAATCGAAGATGAAGACGAAGAAGGGCCGGAGGCAGGTGAGGATTCGGATGCAGCAGAATGA

Protein sequence

MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLTPAAVEYLNERYGINYEEGIEDEDEEGPEAGEDSDAAE

Homology

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BLAST of Clc02G20890 vs. NCBI nr
Match: XP_038902816.1 (50S ribosomal protein L4, chloroplastic [Benincasa hispida])

HSP 1 Score: 514.6 bits (1324), Expect = 5.4e-142
Identity = 275/287 (95.82%), Postives = 277/287 (96.52%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA ST+PSSLSFFTSSVF SSPN QNSKLFCN KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MATSTSPSSLSFFTSSVFLSSPNHQNSKLFCNWKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAP ETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPQETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIEDE---DEEGPEAGEDSDAAE 285
           SDKLVLTPAAVEYLNERYGINYEE  E+E   DEEGPEAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVEYLNERYGINYEEAEEEEGGADEEGPEAGEDSDAAE 287

[Close]

BLAST of Clc02G20890 vs. NCBI nr
Match: XP_008464054.1 (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 503.8 bits (1296), Expect = 9.5e-139
Identity = 270/291 (92.78%), Postives = 276/291 (94.85%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAAST+PSSLSFFTSSVF SSP  QN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGI-------EDEDEEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGI       E+E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]

BLAST of Clc02G20890 vs. NCBI nr
Match: XP_008464053.1 (PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 4.7e-138
Identity = 270/297 (90.91%), Postives = 276/297 (92.93%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAAST+PSSLSFFTSSVF SSP  QN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGI-------------EDEDEEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGI             E+E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]

BLAST of Clc02G20890 vs. NCBI nr
Match: XP_022148353.1 (50S ribosomal protein L4, chloroplastic [Momordica charantia])

HSP 1 Score: 498.4 bits (1282), Expect = 4.0e-137
Identity = 270/296 (91.22%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA STTPSSLSFFTSSVF SS N QNSKLFC+ KPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIED------------EDEEGPEAGEDSDAAE 285
           SDK+VLTPAAV+YLNERYGINYE GIED            E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]

BLAST of Clc02G20890 vs. NCBI nr
Match: XP_023532270.1 (50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 496.9 bits (1278), Expect = 1.2e-136
Identity = 268/293 (91.47%), Postives = 276/293 (94.20%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAASTTPSSLSFF+SS+F SS N QNSKLFCN KPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIEDED---------EEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGIEDE+         EEG EAGE+ DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLEAGEELDAAE 292

[Close]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot
Match: O50061 (50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 PE=2 SV=2)

HSP 1 Score: 363.2 bits (931), Expect = 2.6e-99
Identity = 193/282 (68.44%), Postives = 237/282 (84.04%), Query Frame = 0


Query: 2   AASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F SS + Q  K + ++        +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEGIEDEDEEGPEAGEDS 281
           L++DKLVLTPAAVE+LN RYG++  E  ED+DE+  E  E++
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSEEA 282

[Close]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot
Match: O80361 (50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=2 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 1.4e-97
Identity = 191/278 (68.71%), Postives = 231/278 (83.09%), Query Frame = 0


Query: 8   SSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTGEKVGET 67
           +SLSFF+SS+F S+PN+Q+SK      P  L       +I SE+AT+P+LSF G +VG T
Sbjct: 3   ASLSFFSSSIFLSNPNIQSSKHLLFRSPKQLS-VAAIATIRSEVATIPILSFDGAEVGST 62

Query: 68  YLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTGKARRGS 127
            L+LKSAP +TARAVVHR + TD +N+RRGTASTLTR+EV GGG KPY QKKTG+ARRGS
Sbjct: 63  TLNLKSAPLDTARAVVHRGLTTDLRNQRRGTASTLTRSEVRGGGIKPYPQKKTGRARRGS 122

Query: 128 MRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDKFEKPKTK 187
            RTPLRPGGGVVFGPKP+DWS+KIN+KEKRLAISTA++SA+ NTIVVE+F DKFEKPKTK
Sbjct: 123 NRTPLRPGGGVVFGPKPKDWSVKINKKEKRLAISTALSSASENTIVVEEFNDKFEKPKTK 182

Query: 188 EFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILDSDKLVLT 247
           EFI  ++RWG+DPKEKSLFLMT+VSDNV LSSRNIGTLK+LTPRTLNLFDILDS+KLVLT
Sbjct: 183 EFIDLMRRWGLDPKEKSLFLMTDVSDNVILSSRNIGTLKMLTPRTLNLFDILDSEKLVLT 242

Query: 248 PAAVEYLNERYGINYE-EGIEDEDEEGPEAGEDSDAAE 285
            +AV++LNERYG   E E  E++D+E  + GE  ++ E
Sbjct: 243 KSAVDFLNERYGDENEWEDEEEDDQEDNDGGEAEESTE 279

[Close]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot
Match: O49937 (50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=1 SV=1)

HSP 1 Score: 337.8 bits (865), Expect = 1.2e-91
Identity = 180/282 (63.83%), Postives = 225/282 (79.79%), Query Frame = 0


Query: 1   MAASTTPS-SLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSF 60
           MA ST+ S SLSFF+SS+F S     +SK    L  +S    +  LSI SEL  LP+L+F
Sbjct: 1   MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLPSSSHSQTSLSLSIKSELIPLPILNF 60

Query: 61  TGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKK 120
           +GEKVGET+L+LK+APPE ARAVVHR +IT  QNKRRGTASTLTRAEV GGGRKPY QKK
Sbjct: 61  SGEKVGETFLNLKTAPPEKARAVVHRGLITHLQNKRRGTASTLTRAEVRGGGRKPYPQKK 120

Query: 121 TGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGD 180
           TG+ARRGS  +PLRPGGGV+FGPKPRDW+IK+N+KE+RLA+STA+ASA  N+ VVE+F +
Sbjct: 121 TGRARRGSQGSPLRPGGGVIFGPKPRDWTIKMNKKERRLALSTAIASAVGNSFVVEEFAE 180

Query: 181 KFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDIL 240
            FEKPKTK+FIAA++RWG+DP EKSLF + ++ +NV  S RNI TLKLLTPR+LNLFD+L
Sbjct: 181 NFEKPKTKDFIAAMQRWGLDPAEKSLFFLMDLVENVEKSGRNIRTLKLLTPRSLNLFDVL 240

Query: 241 DSDKLVLTPAAVEYLNERYGINYEEGIEDEDEEGPEAGEDSD 282
           +++KLV T   ++YLN+RYG++  E  EDE+EE  E GE+ D
Sbjct: 241 NAEKLVFTEGTIQYLNQRYGVDTLED-EDEEEEEEEEGEEVD 281

[Close]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot
Match: Q8DMN0 (50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rplD PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.7e-56
Identity = 110/204 (53.92%), Postives = 148/204 (72.55%), Query Frame = 0


Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           V  + G   GE  LDL +A PETA  +VHRA++    N R+GT ST TRAEV GGGRKP+
Sbjct: 6   VKDWQGADSGEATLDLATAKPETASHIVHRALVRQLANARQGTVSTKTRAEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+S K+NRKE+RLA+ TA+ S   + IVV+
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDYSQKMNRKERRLALRTALMSRVEDLIVVQ 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNL 235
           DF D   +PKTKE + AL+RWGI+P++K L L  ++++ V LS+RN+ TLKLL    LN+
Sbjct: 126 DFADHLPRPKTKELVTALQRWGIEPEQKVLLLAADITETVALSARNVPTLKLLRADQLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           FD+L +D++V T  A+  + E YG
Sbjct: 186 FDLLYADRIVATTGAIAKIQEVYG 209

[Close]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot
Match: B0JI02 (50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 GN=rplD PE=3 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 1.8e-55
Identity = 106/204 (51.96%), Postives = 152/204 (74.51%), Query Frame = 0


Query: 56  VLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPY 115
           V ++ GE+ G   L+LK+A PETA+ ++HR +++     R+G AS+ TR+EV GGGRKP+
Sbjct: 6   VKNWQGEEAGTGTLELKTAKPETAKHLIHRVVVSHLAAARQGNASSKTRSEVRGGGRKPW 65

Query: 116 QQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE 175
           +QK TG+AR GS+R+PL  GGGV+FGPKPRD+ +K+NRKEKRLA+ TA+ S A N IVVE
Sbjct: 66  RQKGTGRARAGSIRSPLWRGGGVIFGPKPRDFEVKVNRKEKRLALRTALISQADNFIVVE 125

Query: 176 DFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNL 235
            F ++F +PKTKE  AAL RWG  P+EK L ++TE+ +NV LS RNI  LK++   +LN+
Sbjct: 126 SFAEQFSQPKTKELTAALSRWGASPEEKILLILTEIPENVYLSGRNICNLKIIRADSLNV 185

Query: 236 FDILDSDKLVLTPAAVEYLNERYG 260
           +D++ +D+++ T AA+  + E YG
Sbjct: 186 YDVILADRVIATAAALAKIEEVYG 209

[Close]

BLAST of Clc02G20890 vs. ExPASy TrEMBL
Match: A0A1S3CM35 (50S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.6e-139
Identity = 270/291 (92.78%), Postives = 276/291 (94.85%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAAST+PSSLSFFTSSVF SSP  QN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGI-------EDEDEEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGI       E+E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEGVEAGEDSDAAE 291

[Close]

BLAST of Clc02G20890 vs. ExPASy TrEMBL
Match: A0A1S3CL27 (50S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502034 PE=3 SV=1)

HSP 1 Score: 501.5 bits (1290), Expect = 2.3e-138
Identity = 270/297 (90.91%), Postives = 276/297 (92.93%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAAST+PSSLSFFTSSVF SSP  QN  LF N KPNSLKPQTKPLSISSELATLPVLSFT
Sbjct: 1   MAASTSPSSLSFFTSSVFLSSPKHQNPNLFFNCKPNSLKPQTKPLSISSELATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVE+FGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEEFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGI-------------EDEDEEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGI             E+E+EEG EAGEDSDAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEEEEEEEEEEEEEEEEEEEGVEAGEDSDAAE 297

[Close]

BLAST of Clc02G20890 vs. ExPASy TrEMBL
Match: A0A6J1D3V7 (50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111017027 PE=3 SV=1)

HSP 1 Score: 498.4 bits (1282), Expect = 1.9e-137
Identity = 270/296 (91.22%), Postives = 275/296 (92.91%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MA STTPSSLSFFTSSVF SS N QNSKLFC+ KPNSLKPQTKPLSISS+LATLPVLSF 
Sbjct: 1   MATSTTPSSLSFFTSSVFLSSAN-QNSKLFCHWKPNSLKPQTKPLSISSQLATLPVLSFA 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGG+KPYQQKKT
Sbjct: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGKKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIED------------EDEEGPEAGEDSDAAE 285
           SDK+VLTPAAV+YLNERYGINYE GIED            E EEG EAGEDSDAAE
Sbjct: 241 SDKMVLTPAAVDYLNERYGINYEGGIEDDEEEEEEEQQGEEGEEGLEAGEDSDAAE 295

[Close]

BLAST of Clc02G20890 vs. ExPASy TrEMBL
Match: A0A6J1L3A5 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500015 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 267/292 (91.44%), Postives = 274/292 (93.84%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAASTTPSSLSFF+SS+F SS N QNSKLFCN KPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTTPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEV GGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVRGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIEDED--------EEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGIEDE+        EEG E GED DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEELEGEEGLETGEDLDAAE 291

[Close]

BLAST of Clc02G20890 vs. ExPASy TrEMBL
Match: A0A6J1G917 (50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451819 PE=3 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.6e-136
Identity = 267/293 (91.13%), Postives = 275/293 (93.86%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFT 60
           MAAST PSSLSFF+SS+F SS N QNSKLFCN KPNS KPQ+KPLSISS+LATLPVLSFT
Sbjct: 1   MAASTAPSSLSFFSSSIFLSSAN-QNSKLFCNWKPNSFKPQSKPLSISSQLATLPVLSFT 60

Query: 61  GEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120
           GEKVGET LDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT
Sbjct: 61  GEKVGETVLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKT 120

Query: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180
           GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK
Sbjct: 121 GKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAVNTIVVEDFGDK 180

Query: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILD 240
           FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDIL+
Sbjct: 181 FEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDILN 240

Query: 241 SDKLVLTPAAVEYLNERYGINYEEGIEDED---------EEGPEAGEDSDAAE 285
           SDKLVLTPAAV+YLNERYGINYEEGIEDE+         EEG +AGED DAAE
Sbjct: 241 SDKLVLTPAAVDYLNERYGINYEEGIEDEEEEEEEELEGEEGLDAGEDLDAAE 292

[Close]

BLAST of Clc02G20890 vs. TAIR 10
Match: AT1G07320.2 (ribosomal protein L4 )

HSP 1 Score: 364.4 bits (934), Expect = 8.4e-101
Identity = 194/279 (69.53%), Postives = 235/279 (84.23%), Query Frame = 0


Query: 2   AASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F SS + Q  K + ++        +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGIN-YEEGIEDEDEEGPEA 277
           L++DKLVLTPAAVE+LN RYG++  EE  +DEDE   EA
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDETEEEA 280

[Close]

BLAST of Clc02G20890 vs. TAIR 10
Match: AT1G07320.3 (ribosomal protein L4 )

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-100
Identity = 192/274 (70.07%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 2   AASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F SS + Q  K + ++        +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGIN-YEEGIEDEDE 272
           L++DKLVLTPAAVE+LN RYG++  EE  +DEDE
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDE 275

[Close]

BLAST of Clc02G20890 vs. TAIR 10
Match: AT1G07320.4 (ribosomal protein L4 )

HSP 1 Score: 364.0 bits (933), Expect = 1.1e-100
Identity = 192/274 (70.07%), Postives = 233/274 (85.04%), Query Frame = 0


Query: 2   AASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F SS + Q  K + ++        +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGIN-YEEGIEDEDE 272
           L++DKLVLTPAAVE+LN RYG++  EE  +DEDE
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEEEDDDEDE 275

[Close]

BLAST of Clc02G20890 vs. TAIR 10
Match: AT1G07320.1 (ribosomal protein L4 )

HSP 1 Score: 363.2 bits (931), Expect = 1.9e-100
Identity = 193/282 (68.44%), Postives = 237/282 (84.04%), Query Frame = 0


Query: 2   AASTTPSSLSFFTSSVFFSSPNLQNSKLFCNLKPNSLKPQTKPLSISSELATLPVLSFTG 61
           +++T P+SLSFF+SS+F SS + Q  K + ++        +KPLS+SS+LATLP+LSF G
Sbjct: 3   SSATAPNSLSFFSSSLFLSSSH-QIPKTYISVSKLGSGRVSKPLSVSSQLATLPILSFEG 62

Query: 62  EKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSGGGRKPYQQKKTG 121
           EKVGETYLDLK+AP +TARAVVHRAI+TD  NKRRGTASTLTR EV GGG KPY QKKTG
Sbjct: 63  EKVGETYLDLKAAPEDTARAVVHRAIVTDLNNKRRGTASTLTRGEVRGGGIKPYSQKKTG 122

Query: 122 KARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV---NTIVVEDFG 181
            ARRGS RTPLRPGGGVVFGP+P+DWSIKINRKEK+LAISTA++SAA      IVVE+FG
Sbjct: 123 HARRGSQRTPLRPGGGVVFGPRPKDWSIKINRKEKKLAISTALSSAASAEGGAIVVEEFG 182

Query: 182 DKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKLLTPRTLNLFDI 241
           +KFEKPKTK+F+AA++RWG+DPKEK++FLM +V +NV  SSRNIGTL++LTPRTLNLFDI
Sbjct: 183 EKFEKPKTKDFLAAMQRWGLDPKEKAMFLMIDVDENVAKSSRNIGTLRMLTPRTLNLFDI 242

Query: 242 LDSDKLVLTPAAVEYLNERYGINYEEGIEDEDEEGPEAGEDS 281
           L++DKLVLTPAAVE+LN RYG++  E  ED+DE+  E  E++
Sbjct: 243 LNADKLVLTPAAVEFLNARYGVDAVEE-EDDDEDETEGSEEA 282

[Close]

BLAST of Clc02G20890 vs. TAIR 10
Match: AT2G20060.1 (Ribosomal protein L4/L1 family )

HSP 1 Score: 92.4 bits (228), Expect = 6.1e-19
Identity = 76/270 (28.15%), Postives = 138/270 (51.11%), Query Frame = 0


Query: 1   MAASTTPSSLSFFTSSVFFSSPNLQNSKLFCN-LKPNSLKPQ---TKPLSISSELA---- 60
           ++A+T+ + L+  T+ + +    L N KL  + L P+   P    TK   ++ +      
Sbjct: 27  LSANTSGNGLASLTNDLKYGMALLSNRKLSTSILTPDDSFPSDLLTKKTVLTPDRTIGQY 86

Query: 61  ---TLPVLSFTGEKVGETYLDLKSAPPETARAVVHRAIITDQQNKRRGTASTLTRAEVSG 120
               +PV +F  E+ G   L          + ++H  +      +++GT ST T +EVSG
Sbjct: 87  QDLVIPVTNFQNEEKGFMVLAGDVFDVPIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSG 146

Query: 121 GGRKPYQQKKTGKARRGSMRTPLRPGGGVVFGPKPRDWSIKINRKEKRLAISTAVASAAV 180
            GRKP+ QK TG+AR G++R P   GG V+ GPKPR  +IK+N++ +RL +  A+ + A 
Sbjct: 147 TGRKPWNQKGTGRARHGTLRGPQFRGGCVMHGPKPRSHAIKMNKQVRRLGLKIALTARAA 206

Query: 181 --NTIVVEDFGDKFEKPKTKEFIAALKRWGIDPKEKSLFLMTEVSDNVRLSSRNIGTLKL 240
               +V +D G      KTK  +    +   + K+  +     + + ++L+++N+  + +
Sbjct: 207 EGKLLVFDDLG--LPTHKTKNIVNYYNQME-NTKKVLVVEGGPIDEKLKLATQNLHYVNI 266

Query: 241 LTPRTLNLFDILDSDKLVLTPAAVEYLNER 258
           +    LN++ IL  D L+++  AV  + ER
Sbjct: 267 IPSIGLNVYSILLHDTLLMSRDAVNKIVER 293

The following BLAST results are available for this feature:

BLAST of Clc02G20890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902816.1	5.4e-142	95.82	50S ribosomal protein L4, chloroplastic [Benincasa hispida]	[more]
XP_008464054.1	9.5e-139	92.78	PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X2 [Cucumis melo]	[more]
XP_008464053.1	4.7e-138	90.91	PREDICTED: 50S ribosomal protein L4, chloroplastic isoform X1 [Cucumis melo]	[more]
XP_022148353.1	4.0e-137	91.22	50S ribosomal protein L4, chloroplastic [Momordica charantia]	[more]
XP_023532270.1	1.2e-136	91.47	50S ribosomal protein L4, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc02G20890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O50061	2.6e-99	68.44	50S ribosomal protein L4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL4 ...	[more]
O80361	1.4e-97	68.71	50S ribosomal protein L4, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL4 PE=...	[more]
O49937	1.2e-91	63.83	50S ribosomal protein L4, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL4 PE=...	[more]
Q8DMN0	4.7e-56	53.92	50S ribosomal protein L4 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
B0JI02	1.8e-55	51.96	50S ribosomal protein L4 OS=Microcystis aeruginosa (strain NIES-843) OX=449447 G...	[more]

BLAST of Clc02G20890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CM35	4.6e-139	92.78	50S ribosomal protein L4, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3CL27	2.3e-138	90.91	50S ribosomal protein L4, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A6J1D3V7	1.9e-137	91.22	50S ribosomal protein L4, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1L3A5	1.6e-136	91.44	50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita maxima OX=3...	[more]
A0A6J1G917	1.6e-136	91.13	50S ribosomal protein L4, chloroplastic-like isoform X1 OS=Cucurbita moschata OX...	[more]

BLAST of Clc02G20890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07320.2	8.4e-101	69.53	ribosomal protein L4	[more]
AT1G07320.3	1.1e-100	70.07	ribosomal protein L4	[more]
AT1G07320.4	1.1e-100	70.07	ribosomal protein L4	[more]
AT1G07320.1	1.9e-100	68.44	ribosomal protein L4	[more]
AT2G20060.1	6.1e-19	28.15	Ribosomal protein L4/L1 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013005	50S ribosomal protein uL4	TIGRFAM	TIGR03953	TIGR03953	coord: 77..256 e-value: 6.9E-58 score: 193.0
IPR013005	50S ribosomal protein uL4	PANTHER	PTHR10746	50S RIBOSOMAL PROTEIN L4	coord: 2..278
IPR013005	50S ribosomal protein uL4	HAMAP	MF_01328_B	Ribosomal_L4_B	coord: 59..259 score: 29.579786
IPR002136	Ribosomal protein L4/L1e	PFAM	PF00573	Ribosomal_L4	coord: 78..257 e-value: 3.6E-54 score: 183.4
IPR023574	Ribosomal protein L4 domain superfamily	GENE3D	3.40.1370.10		coord: 37..266 e-value: 1.9E-61 score: 209.2
IPR023574	Ribosomal protein L4 domain superfamily	SUPERFAMILY	52166	Ribosomal protein L4	coord: 53..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 263..284
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 262..284

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G20890.1	Clc02G20890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome