Clc02G20690 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G20690
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRibosomal protein S18
LocationClcChr02: 33121627 .. 33122953 (+)
RNA-Seq ExpressionClc02G20690
SyntenyClc02G20690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTTGTGTTACGTTACCATTATTCTAAGTACTTTAGAATGTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCCCCCAAAAGGGTTGAGTTTCAGGTGAAAACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGGTGAGCATTCCTGAATTTCATTTACCTTGCCATTTTACTAAATCCCCTTTCTCATTTATTATGGGACTAGGACTAAAACATGGTCGAAATTAGTGGTGTGGTAACATACCTTTTGATCAGTTGCGATCGTCTCTCGTAGCAACATGGAATATATTATGGTATGAACTTCTCATATATTAAGTATCATAGCTTATGACTAAAAGAAAAAGAAGCGGCACAGGCTTAGAAAGAAATCTTTAATTTTGAATTGAGTGAATTTGAGTAGTTTAGAAATTTCAATGTACGAGAAACGATAAGTTGGAATATGGTTGTTTACTGCTGGTTTTCTGCACAGTTATATTTAAGAAGTCTGGCAGGGAGTATACATCTGGTTTTTTTAATCAACACTGTCCATCCTAGAACAAAAGGAGCTGTCCGGTTAGAAATTCTGTCTGTCATAATAGACATAGTGTAGTTGATCAGTAGCCATGGACCATCAAACTTTTTATATGAATTGCAGTTAAATCAATTCACTAGTTTCTGATCTGGACAGTGTCCGGTTGTATTTTTCAATGAAGTAAGATCATGCAATGGCCTCTTAAGAGTTTCTAACAGTTGCTCGTTTGCAACATTGTCTGGTCATGGAATTATTCGTTTCATTTTCAGTGCTACCAAAATTAGTCTGGCCATAAGTTTGTCCTTGTGGCCATTGAAATTTAGTCTTGTCCACAGCTCTATTTAGGAAGTTTATTTATAATATAGGGTACCTGTCCAAACAACTAAAAGAATTGACGGGAGTTAAATTGTATTGTATGTCTCTTATCCCTGCTGTAGGCATTTCTAACAAGCGAGTTGTTGTTTGCAGAATGTTAGGTTTCTGGCAAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGGTAAACTTCTTGAACAACAATGAACAAGTTGAATTATCAACCTTTGTCTTATGTTATCGCTTCAACACTTCACAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACAAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGACGATAATGCTGATGCAGATGGGGGTCGCCCGCTTGGATCCTAA

mRNA sequence

ATGATTTTGTGTTACGTTACCATTATTCTAAGTACTTTAGAATGTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCCCCCAAAAGGGTTGAGTTTCAGGTGAAAACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCAAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGGTAAACTTCTTGAACAACAATGAACAAGTTGAATTATCAACCTTTGTCTTATGTTATCGCTTCAACACTTCACAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACAAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGACGATAATGCTGATGCAGATGGGGGTCGCCCGCTTGGATCCTAA

Coding sequence (CDS)

ATGATTTTGTGTTACGTTACCATTATTCTAAGTACTTTAGAATGTATACAGGATCTGGATCTAAGAAAGCCAGGTGTACGTAAGCCCCCCAAAAGGGTTGAGTTTCAGGTGAAAACGGAGGAGGTCTTAAGAAAAGCTGATTTCAGGAATGTTAGGTTTCTGGCAAACTTTATAACTGATGCCGGGATCATTATCAAGAGGAGCAAGGTAAACTTCTTGAACAACAATGAACAAGTTGAATTATCAACCTTTGTCTTATGTTATCGCTTCAACACTTCACAGACAGGTATTAGTGCCAAGGCACAGAGGAAAGTTGCGCGCGAGATCAAAACTGCACGAGCATTTGGCTTAATGCCCTTCACAACAATGGGAACAAAATCATTTATTTTTGGCAGAACCATGGAAAATCTTGATAAGGACTTCGAGTATGAAGTTTTCGACGATAATGCTGATGCAGATGGGGGTCGCCCGCTTGGATCCTAA

Protein sequence

MILCYVTIILSTLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGGRPLGS
Homology
BLAST of Clc02G20690 vs. NCBI nr
Match: XP_022148322.1 (uncharacterized protein LOC111017003 [Momordica charantia])

HSP 1 Score: 202.2 bits (513), Expect = 3.3e-48
Identity = 110/150 (73.33%), Postives = 118/150 (78.67%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDLRKPGVRKPPKRVEFQV TEEVL+KADFRNVRFLANFITDAGII KRSK 
Sbjct: 148 STYE-IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSK- 207

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMPFTTMGTK+F+F
Sbjct: 208 ------------------------TGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVF 267

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+ ADAD G PLGS
Sbjct: 268 GKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

BLAST of Clc02G20690 vs. NCBI nr
Match: XP_023532312.1 (uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK 
Sbjct: 36  STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSK- 95

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 96  ------------------------TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 155

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME LDKD+EYEVF++N DAD GRP GS
Sbjct: 156 GKTMEYLDKDYEYEVFENNTDADRGRPHGS 159

BLAST of Clc02G20690 vs. NCBI nr
Match: XP_022947026.1 (uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata])

HSP 1 Score: 199.5 bits (506), Expect = 2.2e-47
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK 
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME LDKD+EYEVF++N DAD GRP GS
Sbjct: 267 GKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

BLAST of Clc02G20690 vs. NCBI nr
Match: XP_022986919.1 (uncharacterized protein LOC111484513 [Cucurbita maxima])

HSP 1 Score: 196.4 bits (498), Expect = 1.8e-46
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK 
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+N   DGG PLGS
Sbjct: 267 GKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

BLAST of Clc02G20690 vs. NCBI nr
Match: XP_023512473.1 (uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 195.3 bits (495), Expect = 4.1e-46
Identity = 109/150 (72.67%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E ++DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK 
Sbjct: 147 STYE-VKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+N   DGG PLGS
Sbjct: 267 GKTMEDLDKDYEYEVFDNN---DGGYPLGS 267

BLAST of Clc02G20690 vs. ExPASy TrEMBL
Match: A0A6J1D4R9 (uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017003 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.6e-48
Identity = 110/150 (73.33%), Postives = 118/150 (78.67%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDLRKPGVRKPPKRVEFQV TEEVL+KADFRNVRFLANFITDAGII KRSK 
Sbjct: 148 STYE-IKDLDLRKPGVRKPPKRVEFQVTTEEVLKKADFRNVRFLANFITDAGIINKRSK- 207

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMPFTTMGTK+F+F
Sbjct: 208 ------------------------TGISAKAQRKVAREIKTARAFGLMPFTTMGTKTFVF 267

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+ ADAD G PLGS
Sbjct: 268 GKTMEDLDKDYEYEVFDNTADADRGHPLGS 271

BLAST of Clc02G20690 vs. ExPASy TrEMBL
Match: A0A6J1G586 (uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451027 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 1.0e-47
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGII KRSK 
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIINKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME LDKD+EYEVF++N DAD GRP GS
Sbjct: 267 GKTMEYLDKDYEYEVFENNTDADRGRPHGS 270

BLAST of Clc02G20690 vs. ExPASy TrEMBL
Match: A0A6J1JHF0 (uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 8.9e-47
Identity = 110/150 (73.33%), Postives = 116/150 (77.33%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK 
Sbjct: 147 STYE-IKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+N   DGG PLGS
Sbjct: 267 GKTMEDLDKDYEYEVFDNN---DGGHPLGS 267

BLAST of Clc02G20690 vs. ExPASy TrEMBL
Match: A0A6J1FYC1 (uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC111448465 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 9.8e-46
Identity = 108/150 (72.00%), Postives = 115/150 (76.67%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E ++DLDL KPGVRKPPKRVEFQV TEEVLRKADFRNVRFLANFITDAGIIIKRSK 
Sbjct: 147 STYE-VKDLDLTKPGVRKPPKRVEFQVTTEEVLRKADFRNVRFLANFITDAGIIIKRSK- 206

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   T ISAKAQRKVAREIKTARAFGLMPFTTMGTKSF+F
Sbjct: 207 ------------------------TRISAKAQRKVAREIKTARAFGLMPFTTMGTKSFVF 266

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME+LDKD+EYEVFD+N   DG  PLGS
Sbjct: 267 GKTMEDLDKDYEYEVFDNN---DGEHPLGS 267

BLAST of Clc02G20690 vs. ExPASy TrEMBL
Match: A0A6J1KYL3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX=3661 GN=LOC111499912 PE=3 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.8e-44
Identity = 106/150 (70.67%), Postives = 112/150 (74.67%), Query Frame = 0

Query: 11  STLECIQDLDLRKPGVRKPPKRVEFQVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKV 70
           ST E I+DLDL KPGVRK PKRVEF V TEEVLR ADFRNVRFLANFITDAGII KRSK 
Sbjct: 144 STYE-IKDLDLTKPGVRKLPKRVEFXVMTEEVLRXADFRNVRFLANFITDAGIINKRSK- 203

Query: 71  NFLNNNEQVELSTFVLCYRFNTSQTGISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIF 130
                                   TGISAKAQRKVAREIKTARAFGLMP TTMGTKSF+F
Sbjct: 204 ------------------------TGISAKAQRKVAREIKTARAFGLMPLTTMGTKSFVF 263

Query: 131 GRTMENLDKDFEYEVFDDNADADGGRPLGS 161
           G+TME LDKD+EYEVF++N DAD GRP GS
Sbjct: 264 GKTMEYLDKDYEYEVFENNTDADRGRPHGS 267

BLAST of Clc02G20690 vs. TAIR 10
Match: AT1G07210.1 (Ribosomal protein S18 )

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 77/120 (64.17%), Postives = 86/120 (71.67%), Query Frame = 0

Query: 36  QVKTEEVLRKADFRNVRFLANFITDAGIIIKRSKVNFLNNNEQVELSTFVLCYRFNTSQT 95
           +V TEEVL+ ADFRNVRFLANFIT+AGIIIKR                          QT
Sbjct: 165 EVTTEEVLKNADFRNVRFLANFITEAGIIIKR-------------------------KQT 224

Query: 96  GISAKAQRKVAREIKTARAFGLMPFTTMGTKSFIFGRTMENLDKDFEYEVFDDNADADGG 155
           GISAKAQRK+AREIKTARAFGLMPFTTMGTK+F FG+TMEN D+DFEYEV DD+ + D G
Sbjct: 225 GISAKAQRKIAREIKTARAFGLMPFTTMGTKAFQFGKTMENRDQDFEYEVLDDDDEFDEG 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022148322.13.3e-4873.33uncharacterized protein LOC111017003 [Momordica charantia][more]
XP_023532312.12.2e-4773.33uncharacterized protein LOC111794503 [Cucurbita pepo subsp. pepo][more]
XP_022947026.12.2e-4773.33uncharacterized protein LOC111451027 isoform X1 [Cucurbita moschata][more]
XP_022986919.11.8e-4673.33uncharacterized protein LOC111484513 [Cucurbita maxima][more]
XP_023512473.14.1e-4672.67uncharacterized protein LOC111777218 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D4R91.6e-4873.33uncharacterized protein LOC111017003 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1G5861.0e-4773.33uncharacterized protein LOC111451027 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JHF08.9e-4773.33uncharacterized protein LOC111484513 OS=Cucurbita maxima OX=3661 GN=LOC111484513... [more]
A0A6J1FYC19.8e-4672.00uncharacterized protein LOC111448465 OS=Cucurbita moschata OX=3662 GN=LOC1114484... [more]
A0A6J1KYL31.8e-4470.67LOW QUALITY PROTEIN: uncharacterized protein LOC111499912 OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
AT1G07210.11.1e-3364.17Ribosomal protein S18 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036870Ribosomal protein S18 superfamilyGENE3D4.10.640.10Ribosomal protein S18coord: 18..123
e-value: 2.1E-17
score: 64.9
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 25..85
IPR036870Ribosomal protein S18 superfamilySUPERFAMILY46911Ribosomal protein S18coord: 92..121
IPR001648Ribosomal protein S18PFAMPF01084Ribosomal_S18coord: 93..118
e-value: 1.5E-7
score: 31.5
IPR001648Ribosomal protein S18PANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 17..69
IPR001648Ribosomal protein S18PANTHERPTHR1347930S RIBOSOMAL PROTEIN S18coord: 93..153
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 93..153
NoneNo IPR availablePANTHERPTHR13479:SF4028S RIBOSOMAL PROTEIN S18C, MITOCHONDRIALcoord: 17..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G20690.2Clc02G20690.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome