Clc02G20250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G20250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 1
Location	ClcChr02: 32812717 .. 32815640 (+)
RNA-Seq Expression	Clc02G20250
Synteny	Clc02G20250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGGTTAGTTGCAAGTTCCTCGCTCTCTTTCTCTGTTCTTCTGTAATTCCTAACTCTCTCTTATGCCTCCATAGCCTTTAGATGCTGATTGTTTTCAAATTTCGTAAAATTATATCCTAACTTGTCCTTCTGAATCATTGCGATAGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGTTTGCTCTCACTTCGAAAGCAACTACTGAGTTAAAATTTCATGGAAACCCAACATTTTAGTTGTATATCTGAATATGTAAATTCGGCACTGTTGCTTATCAAAGCCTGCTTAATCTTATTACTGACTGAAGGGTTTAGCATTGTTATTGAAGTCCACAAATTCAGTCTTCCAAAAGTTGAGATGGTATTTGAGCTTGAAGGATTACATTGGGGTCCTTTCGATAATGGTTATGATACTGCCTCGTAACCACATTTGATTTTGGGTCTGATTTTTTTCCCCCTCTAACAGCGGTCTAAATGTTGCGCCATGGCTTCCATACTGGCCATATGTGTCCTATGAAGAGTTTGTGGGCTATTAGACATTGATTTGTTGTGTTTATAGTTGGTGTATTGTTAGAACTGTTTTGTTGTTTATATTCTTAGTTTTGATTAAAAGCTTTGTCTGTTAGATTCATAGCAGTGGTTGGTTATTGAAATTCAGTGGCCAAGCAGTATCTACAGTAACAAAACCACCCACTGTACTCATTGTATCAATAAAAATATGAATAGAACTATTGAAATGCACTAGTTTTTTATCTATGAGTGTCAGGACCAGCTTACGCACCTCGACTAATCTCACGGGTTCTCACTAGACAACCTGCCTGACCCTACAACATTTGGGTAGCAAGGAAACTCGTAAGATATTAAATCCTAGATAGGTGGCCACCATAGATTGAACCCATGACCTCTTAGCATTTATTATGACTATGTCTCCTTTTTTAGCACTAGGCCAATCCATGATGGTTTATAGAAAAGTGGTTCTTGAAACTTAGATTAGGGCTATCTTGAATCTGTGTTTTGTTTGCCTGCTTCTTAAGACAACTTAAGCTATTATTCATTTTAAAATTATGAGTTGGGTATAACAAAGGGCTTAGAGAGAATGAATTCAAGCCCAAGATTGCCAATGATCTAGGATTTAATACCTTATGAGTTCTGTTTGCAACCAAATGTAGTAAAGTCAGATGGTTGTTTCATGAGAATAGTTTAAGTGCACAGAACTTAGTCGGGGACACTAATGGATGTCAAAAAGAAAAAAGAAAAAGGTTTCTTTGGCCTTGCAAAATTGCAATCCATACAGCACAACTTTTTGTAAACAGTTTTGAACAAGGAGAAAAAGGCTATTTTAAAAAACAGCTCCCCAGCCATCATTTAGGTTTAGAATATTTTGTTTTGTGGTTTGATGGTTTGCTTTCAGTGACTTGTGCTTGTGCATACATTGTGTTGATAGAAGGAGGAAGCTATCGACTTGGAGAAAATACTTCTCAAACTCGTACATATTATGAACATACAGCTATCATTAAATACTTTTTAAGGGTTTGGCCTCGAGATATTCGGGAGGCGATTGAGGAGTTCCTTCTCCATTTGCCCTTCAAGGAGAAAGGCCGGTTTTTATGGAGAGCTAGGGTGTGCTATTTTGCAGGCTTGTTTTTTGTGGCCCTTGTATGTTTTCATTTTTTCTCAATGAAAGTAGTTGTTTCAATAAAAAGAAAATGAACACACTAAAGACTGCAAAAGTCGAAAATAAAACTGAAGTTCAACTTCCATCTTTGTGATCACTAAATAAACATTTCTATTCATGGAGTCTTTGATGTTGTCTCATCCTTCGAGGGTGAAATGAATATGTACAGTACACTGGGAAAGATATAATCCCTCTCTCTTTCCTTTTTTTTTTTTTTTAAAGAAAAAGATGATAGAAATAATCTCTTAGAGGGCACGAGCGAAGAGTGGAGTTGTAAAGTATAGTTGTTAAGTTTGGAAAGTTGTTTTGTTGTCATGCCTATAACGTAAAAAGTTAACAAGTCATGAATGTTCTGCCCACAATGAGTTTAAGAATTTCTTGGGGCAAACAAGGAGTCTTCCCCAACTCCTACTCCTTGGGCCAAACATGCCCTTATTGTTTTGTTGGATACATATAAAGAATCTCAATTTTGTCACAAGATTTTAGACAGTTTTAATCGTGCTTATGCACATTGTTACTTGACCTTAGCCTTTGTAAAACAATGAGCAACTTTGCATTTTGGATCCACATGAACCTAAGTCTGTGTGATGAGTTATAATGCTTGAATCACTCAATAAGTTTCTTAGTTGAAGATTTGAACTAGAAGAAACCAGGTGAAAAGGATGGCATGATTATCATCATCTTGAAAAAGCAAGATAGGAAAGGTTGCCTGATCTTCTTTCCTTCATGGTTTCGTCATATTTTCCTGGGACTCTTTCAGAACTTTTTCATTCTGATATGTTATTCATACTAATTTGATGTGTTTATTTCGTAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGA

mRNA sequence

ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGA

Coding sequence (CDS)

ATGAATTCTTCGTCGGGGCCATCACGGCCGGACCTCCCCGTAGCACCTAATCGCGGGAAGTTTCAATCGGAGACGGAGAGATTGAGCTCCGACGTTGGTGGACTGGAAGGTTCATTGCTTCAGATGGTTAATGATCACCACTACGCCTCTCTCAAGCTCAGGGAAAACTCCGAGAAAGCGAAGAAAGATGCTATACAGAAGGCGGTGCGCGTTTCGGATCTTTTAGTCGATGCCGTGAATGGTGGAGTTCAGGAATCTTTTGTCAATCAGAAGTTGATTGAGCTCGAAATTAGGGCTTTAGCGACTACGATTGCCCGATTTACGAAGCAGACCGATCAATGGCTTGCCGCCACTCACGCTTTGAACACTGCCGTTAAGGAAATTGGAGATTTTGAGAACTGGATAAAGACCATCGATTTCGATTGTAAAAGCATCACTACAGCCATCCAAAACATTTATCAAGACTGA

Protein sequence

MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD

Homology

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BLAST of Clc02G20250 vs. NCBI nr
Match: XP_038900751.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 147/155 (94.84%), Postives = 151/155 (97.42%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           MNSSSGPSRPDLPVAPNRGKFQSETE L+++VGGLE SLLQMVNDHHYASLKLRENSEKA
Sbjct: 1   MNSSSGPSRPDLPVAPNRGKFQSETEGLTAEVGGLEASLLQMVNDHHYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLL DAVNGGVQ+SFVNQKLIELEIRALATTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLFDAVNGGVQDSFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. NCBI nr
Match: XP_008463815.1 (PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SS G SRPDLPV PNRGKFQS+TERLS+DVGGLE SLLQMV+DH YASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. NCBI nr
Match: XP_011657181.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Cucumis sativus] >KAE8647013.1 hypothetical protein Csa_016997 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 1.2e-71
Identity = 144/155 (92.90%), Postives = 146/155 (94.19%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SSSG SRPDLPV PNR KFQSETERL++DVGGLE SLLQMV DH YASLKLRENSEKA
Sbjct: 1   MRSSSGQSRPDLPVGPNRVKFQSETERLTADVGGLEASLLQMVTDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL TTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALGTTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. NCBI nr
Match: XP_022948128.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschata] >KAG7023932.1 Biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.2 bits (687), Expect = 2.2e-68
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           MNS SG SR  LP   NRGKFQSE ERLS+DVGGLE SL QMVNDH YASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. NCBI nr
Match: XP_023534753.1 (biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.8e-68
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           MNS SG SR  LP   NRGKFQSE ERLS+DVGGLE SL QMVNDH YASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEDSLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot
Match: O22929 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis thaliana OX=3702 GN=BLOS1 PE=1 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.0e-41
Identity = 81/132 (61.36%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 24  ETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGV 83
           E E+   +   LE SLLQ+++D+  +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV
Sbjct: 19  EKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGV 78

Query: 84  QESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCK 143
           +E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+AVKEIGDFENW+KT++FDCK
Sbjct: 79  EECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDFENWMKTMEFDCK 138

Query: 144 SITTAIQNIYQD 156
            IT AI+NI++D
Sbjct: 139 KITAAIRNIHED 150

[Close]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot
Match: Q0VFD8 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropicalis OX=8364 GN=bloc1s1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 6.6e-20
Identity = 45/116 (38.79%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +KDAI  A  +++ LVD +N GV +++VNQ+ ++ E++
Sbjct: 2   LSRLLKEHQGKQTERKEAQEKRRKDAIAAATTLTEALVDHLNVGVAQAYVNQRKLDHEVK 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L T  A+F KQT QW++     N A+KEIGD ENW ++I+ D + I TA++ +Y+
Sbjct: 62  TLQTQAAQFAKQTTQWISLVENFNQALKEIGDVENWARSIEKDMRIIATALEYVYK 117

[Close]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot
Match: Q2NKW0 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9913 GN=BLOC1S1 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 41/116 (35.34%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 2   LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L    A+F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA++ +Y+
Sbjct: 62  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 117

[Close]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot
Match: Q54VX7 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium discoideum OX=44689 GN=bloc1s1 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 49/115 (42.61%), Postives = 70/115 (60.87%), Query Frame = 0


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L ++V DH     KL+E +E  KK+AI     V++ L+D+VN GV   F NQK +E E R
Sbjct: 2   LSKLVKDHQTHQNKLKEENEVLKKEAIASMGVVTNGLIDSVNTGVACIFANQKKLETEAR 61

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIY 154
            L    A+F+KQT+QW+      N ++KEIGD ENW K I+ D  +I+  I+ +Y
Sbjct: 62  LLQANTAKFSKQTNQWIHLIENFNNSLKEIGDVENWSKKIESDMHNISDIIEFLY 116

[Close]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot
Match: P78537 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX=9606 GN=BLOC1S1 PE=1 SV=2)

HSP 1 Score: 93.2 bits (230), Expect = 2.8e-18
Identity = 41/116 (35.34%), Postives = 75/116 (64.66%), Query Frame = 0


Query: 39  LLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIR 98
           L +++ +H     + +E  EK +++AI  A  +++ LVD +N GV ++++NQ+ ++ E++
Sbjct: 30  LSRLLKEHQAKQNERKELQEKRRREAITAATCLTEALVDHLNVGVAQAYMNQRKLDHEVK 89

Query: 99  ALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQ 155
            L    A+F KQT QW+      N A+KEIGD ENW ++I+ D ++I TA++ +Y+
Sbjct: 90  TLQVQAAQFAKQTGQWIGMVENFNQALKEIGDVENWARSIELDMRTIATALEYVYK 145

[Close]

BLAST of Clc02G20250 vs. ExPASy TrEMBL
Match: A0A1S3CKJ9 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX=3656 GN=LOC103501869 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.9e-72
Identity = 144/155 (92.90%), Postives = 147/155 (94.84%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SS G SRPDLPV PNRGKFQS+TERLS+DVGGLE SLLQMV+DH YASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. ExPASy TrEMBL
Match: A0A6J1G8I4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita moschata OX=3662 GN=LOC111451801 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 1.0e-68
Identity = 139/155 (89.68%), Postives = 141/155 (90.97%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           MNS SG SR  LP   NRGKFQSE ERLS+DVGGLE SL QMVNDH YASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHLPAPRNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. ExPASy TrEMBL
Match: A0A6J1L4G4 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxima OX=3661 GN=LOC111499798 PE=3 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.6e-67
Identity = 137/155 (88.39%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           MNS SG SR   P A NRGKFQSE ERLS+DVGGLE SL QMVNDH YASLKLRENSEKA
Sbjct: 1   MNSPSGQSRQHHPAARNRGKFQSEAERLSADVGGLEASLFQMVNDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKA+RVSDLLVDAVNGGVQ SFVNQKLIELEIRAL+TTI RF KQTDQWLAATHA
Sbjct: 61  KKDAIQKALRVSDLLVDAVNGGVQGSFVNQKLIELEIRALSTTITRFMKQTDQWLAATHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTAVKEIGDFENWIKTIDFDCKSITTAI NIYQD
Sbjct: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. ExPASy TrEMBL
Match: A0A6J1D9F5 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica charantia OX=3673 GN=LOC111018127 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.4e-65
Identity = 132/155 (85.16%), Postives = 140/155 (90.32%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M+S SGPSRP LPVA NRG  QSETERLSS+ GGLE SLLQMV+DH +ASLKLR++SEKA
Sbjct: 1   MDSPSGPSRPHLPVARNRGMLQSETERLSSEAGGLEASLLQMVHDHQFASLKLRQDSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLV AVNGGVQESFVNQKLIELEIRALA TI+RF KQTDQWL  THA
Sbjct: 61  KKDAIQKAVRVSDLLVHAVNGGVQESFVNQKLIELEIRALAATISRFMKQTDQWLTTTHA 120

Query: 121 LNTAVKEIGDFENWIKTIDFDCKSITTAIQNIYQD 156
           LNTA+KEIGDFENWIKTIDFDCKSIT AI NIYQD
Sbjct: 121 LNTAIKEIGDFENWIKTIDFDCKSITAAIHNIYQD 155

[Close]

BLAST of Clc02G20250 vs. ExPASy TrEMBL
Match: A0A5A7V238 (Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00400 PE=3 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.6e-55
Identity = 117/129 (90.70%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MNSSSGPSRPDLPVAPNRGKFQSETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKA 60
           M SS G SRPDLPV PNRGKFQS+TERLS+DVGGLE SLLQMV+DH YASLKLRENSEKA
Sbjct: 1   MKSSLGQSRPDLPVPPNRGKFQSDTERLSADVGGLEVSLLQMVSDHQYASLKLRENSEKA 60

Query: 61  KKDAIQKAVRVSDLLVDAVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120
           KKDAIQKAVRVSDLLVD VNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA
Sbjct: 61  KKDAIQKAVRVSDLLVDTVNGGVQESFVNQKLIELEIRALATTIARFTKQTDQWLAATHA 120

Query: 121 LNTAVKEIG 130
           LNTAVK  G
Sbjct: 121 LNTAVKHFG 129

[Close]

BLAST of Clc02G20250 vs. TAIR 10
Match: AT2G30330.1 (GCN5L1 family protein )

HSP 1 Score: 169.5 bits (428), Expect = 2.2e-42
Identity = 81/132 (61.36%), Postives = 108/132 (81.82%), Query Frame = 0


Query: 24  ETERLSSDVGGLEGSLLQMVNDHHYASLKLRENSEKAKKDAIQKAVRVSDLLVDAVNGGV 83
           E E+   +   LE SLLQ+++D+  +SL+LRE +E+++K+AI+ A R +DLLV AVNGGV
Sbjct: 19  EKEKSEEESETLESSLLQLIDDNRRSSLQLREKTERSRKEAIRHAARTADLLVKAVNGGV 78

Query: 84  QESFVNQKLIELEIRALATTIARFTKQTDQWLAATHALNTAVKEIGDFENWIKTIDFDCK 143
           +E FVN+K IE EIR LA T+A+F KQTDQWLA THA+N+AVKEIGDFENW+KT++FDCK
Sbjct: 79  EECFVNEKRIESEIRNLAITVAKFGKQTDQWLAVTHAVNSAVKEIGDFENWMKTMEFDCK 138

Query: 144 SITTAIQNIYQD 156
            IT AI+NI++D
Sbjct: 139 KITAAIRNIHED 150

The following BLAST results are available for this feature:

BLAST of Clc02G20250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900751.1	1.2e-74	94.84	biogenesis of lysosome-related organelles complex 1 subunit 1 [Benincasa hispida...	[more]
XP_008463815.1	1.2e-71	92.90	PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucumi...	[more]
XP_011657181.1	1.2e-71	92.90	biogenesis of lysosome-related organelles complex 1 subunit 1 isoform X1 [Cucumi...	[more]
XP_022948128.1	2.2e-68	89.68	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita moschat...	[more]
XP_023534753.1	2.8e-68	89.68	biogenesis of lysosome-related organelles complex 1 subunit 1 [Cucurbita pepo su...	[more]

BLAST of Clc02G20250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22929	3.0e-41	61.36	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Arabidopsis tha...	[more]
Q0VFD8	6.6e-20	38.79	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Xenopus tropica...	[more]
Q2NKW0	2.8e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Bos taurus OX=9...	[more]
Q54VX7	2.8e-18	42.61	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Dictyostelium d...	[more]
P78537	2.8e-18	35.34	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Homo sapiens OX...	[more]

BLAST of Clc02G20250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CKJ9	5.9e-72	92.90	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo OX...	[more]
A0A6J1G8I4	1.0e-68	89.68	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita mosch...	[more]
A0A6J1L4G4	2.6e-67	88.39	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucurbita maxim...	[more]
A0A6J1D9F5	1.4e-65	85.16	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Momordica chara...	[more]
A0A5A7V238	8.6e-55	90.70	Biogenesis of lysosome-related organelles complex 1 subunit 1 OS=Cucumis melo va...	[more]

BLAST of Clc02G20250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30330.1	2.2e-42	61.36	GCN5L1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PFAM	PF06320	GCN5L1	coord: 42..154 e-value: 2.6E-41 score: 140.4
IPR009395	Biogenesis of lysosome-related organelles complex 1 subunit 1	PANTHER	PTHR13073	BLOC-1 COMPLEX SUBUNIT 1	coord: 21..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G20250.2	Clc02G20250.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051641	cellular localization
cellular_component	GO:0031083	BLOC-1 complex