Clc02G20200 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G20200
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Late embryogenesis abundant protein
Location	ClcChr02: 32784938 .. 32785960 (-)
RNA-Seq Expression	Clc02G20200
Synteny	Clc02G20200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGAATTCCCGCCACTTAATCACCATATTCCATTGCCACCGCCAGCCTCCGCCCAACCAAGCTCCATTTAACCACATTGCCGCCGTAGGTCAACTTCCTCTGTTCGTTCTTCCGCCCTGCTCGGATCTCAAACTTTTCCGAAACGTTTCTCCAAATTAATTGAGCCCTGCGAAATTAATTCCATTCGGCAGCAAATTTTCCAAATCTCTTCCTCATCACACACTATTAAAACTCTCAAAATCTGAATCTGAACCCTAAAATACACACAGCTTCCCAAACCAGCCCTACAATGGCCGCTCCCAGTACAAAATTACTGCGAAACATTTGCATAGCCATATTGCTCTGTCTAATTCTTACCGTAATTTTGATCCTCATTTTAGCCTTTACTGTTTTCAAGCCCAAGCGGCCTATCATCGCCGTCGATTCAGTTTCTCTACTCGATCTGAACGTTTCTCTGGTTAGCGGCGTCGATCTGAACCTATCTCTCATGGTGGATCTATCCGTTGAGAATCCGAATAAGGTCGCCTTTGAATACTCTCAAAGCACCGCCGTTGTGAGTTACAGAGGCGAAGAAGTCGGAGAAGCGCCGATTCCAGCTGGCCGATTATCAGCCGAAGGGACTGAGAAAATGAACCTAACGCTGACGATGATGGCGGACCGGATGCTGGCGAAGTCGGAGGTGTTTTCCGACGTGGTTTCCGGTAAACTTCCGATCAGTACTTTCGCTCGGTTGTCCGGGAAAGTGAAGGTGATCGGTGTTTTCAAGATTCATGTTGTGGCGTCGTCGTCTTGTGATCTCACCATTGATATTACAAATGGAAGCATTGGAGATCAGCAATGCCAATACCGGACGAAGCTCTGAGGATTTTGGAGGGTTTTTTTTAGTTGATTTTTTCTCTTCAGTTTTTTGGGTATTTTGGTGTTTGGAGGTTGGAATTGAAAATTAAACAGAAAAGTGAGGGCAAATCTGGAAATGTGTACAGTCCAAAAGTGGTTTTGCGATGCTTGTGGCGCCAATGCAT

mRNA sequence

TTTGAATTCCCGCCACTTAATCACCATATTCCATTGCCACCGCCAGCCTCCGCCCAACCAAGCTCCATTTAACCACATTGCCGCCGTAGGTCAACTTCCTCTGTTCGTTCTTCCGCCCTGCTCGGATCTCAAACTTTTCCGAAACGTTTCTCCAAATTAATTGAGCCCTGCGAAATTAATTCCATTCGGCAGCAAATTTTCCAAATCTCTTCCTCATCACACACTATTAAAACTCTCAAAATCTGAATCTGAACCCTAAAATACACACAGCTTCCCAAACCAGCCCTACAATGGCCGCTCCCAGTACAAAATTACTGCGAAACATTTGCATAGCCATATTGCTCTGTCTAATTCTTACCGTAATTTTGATCCTCATTTTAGCCTTTACTGTTTTCAAGCCCAAGCGGCCTATCATCGCCGTCGATTCAGTTTCTCTACTCGATCTGAACGTTTCTCTGGTTAGCGGCGTCGATCTGAACCTATCTCTCATGGTGGATCTATCCGTTGAGAATCCGAATAAGGTCGCCTTTGAATACTCTCAAAGCACCGCCGTTGTGAGTTACAGAGGCGAAGAAGTCGGAGAAGCGCCGATTCCAGCTGGCCGATTATCAGCCGAAGGGACTGAGAAAATGAACCTAACGCTGACGATGATGGCGGACCGGATGCTGGCGAAGTCGGAGGTGTTTTCCGACGTGGTTTCCGGTAAACTTCCGATCAGTACTTTCGCTCGGTTGTCCGGGAAAGTGAAGGTGATCGGTGTTTTCAAGATTCATGTTGTGGCGTCGTCGTCTTGTGATCTCACCATTGATATTACAAATGGAAGCATTGGAGATCAGCAATGCCAATACCGGACGAAGCTCTGAGGATTTTGGAGGGTTTTTTTTAGTTGATTTTTTCTCTTCAGTTTTTTGGGTATTTTGGTGTTTGGAGGTTGGAATTGAAAATTAAACAGAAAAGTGAGGGCAAATCTGGAAATGTGTACAGTCCAAAAGTGGTTTTGCGATGCTTGTGGCGCCAATGCAT

Coding sequence (CDS)

ATGGCCGCTCCCAGTACAAAATTACTGCGAAACATTTGCATAGCCATATTGCTCTGTCTAATTCTTACCGTAATTTTGATCCTCATTTTAGCCTTTACTGTTTTCAAGCCCAAGCGGCCTATCATCGCCGTCGATTCAGTTTCTCTACTCGATCTGAACGTTTCTCTGGTTAGCGGCGTCGATCTGAACCTATCTCTCATGGTGGATCTATCCGTTGAGAATCCGAATAAGGTCGCCTTTGAATACTCTCAAAGCACCGCCGTTGTGAGTTACAGAGGCGAAGAAGTCGGAGAAGCGCCGATTCCAGCTGGCCGATTATCAGCCGAAGGGACTGAGAAAATGAACCTAACGCTGACGATGATGGCGGACCGGATGCTGGCGAAGTCGGAGGTGTTTTCCGACGTGGTTTCCGGTAAACTTCCGATCAGTACTTTCGCTCGGTTGTCCGGGAAAGTGAAGGTGATCGGTGTTTTCAAGATTCATGTTGTGGCGTCGTCGTCTTGTGATCTCACCATTGATATTACAAATGGAAGCATTGGAGATCAGCAATGCCAATACCGGACGAAGCTCTGA

Protein sequence

MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGVDLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMMADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQCQYRTKL

Homology

[Close]

BLAST of Clc02G20200 vs. NCBI nr
Match: KAA0033488.1 (putative Harpin-induced 1 [Cucumis melo var. makuwa] >TYK26841.1 putative Harpin-induced 1 [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 5.3e-69
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGV 60
           MAAP++KLLRN CI ++L LIL V+L+L+LAFTVFKP+RPII VDSVSLLDLNV+L  GV
Sbjct: 8   MAAPASKLLRNFCITLVLSLILLVVLVLVLAFTVFKPQRPIIVVDSVSLLDLNVALTDGV 67

Query: 61  DLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTM 120
           DLNLS+ VDL+VENPNKVAFEYS+STAVV YRGE+VGEAPIP GRL  +GT+KMNLTLT+
Sbjct: 68  DLNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTI 127

Query: 121 MADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIG 180
           M +RML +SEVFSDVVSG+L IST ARL+GKVKV+GV KIHVVAS+SCDL ID+ NGS G
Sbjct: 128 MGERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFG 187

Query: 181 DQQCQYRTKL 191
           DQ CQ+RT++
Sbjct: 188 DQLCQFRTRV 197

[Close]

BLAST of Clc02G20200 vs. NCBI nr
Match: XP_008465308.1 (PREDICTED: uncharacterized protein LOC103502964 [Cucumis melo])

HSP 1 Score: 271.6 bits (693), Expect = 5.3e-69
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGV 60
           MAAP++KLLRN CI ++L LIL V+L+L+LAFTVFKP+RPII VDSVSLLDLNV+L  GV
Sbjct: 1   MAAPASKLLRNFCITLVLSLILLVVLVLVLAFTVFKPQRPIIVVDSVSLLDLNVALTDGV 60

Query: 61  DLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTM 120
           DLNLS+ VDL+VENPNKVAFEYS+STAVV YRGE+VGEAPIP GRL  +GT+KMNLTLT+
Sbjct: 61  DLNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTI 120

Query: 121 MADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIG 180
           M +RML +SEVFSDVVSG+L IST ARL+GKVKV+GV KIHVVAS+SCDL ID+ NGS G
Sbjct: 121 MGERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFG 180

Query: 181 DQQCQYRTKL 191
           DQ CQ+RT++
Sbjct: 181 DQLCQFRTRV 190

[Close]

BLAST of Clc02G20200 vs. NCBI nr
Match: XP_011658424.1 (uncharacterized protein LOC105435999 [Cucumis sativus] >KGN47220.1 hypothetical protein Csa_017024 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 2.5e-66
Identity = 142/189 (75.13%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 2   AAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGVD 61
           AAP++KLL NIC+ + L LIL ++  LILAFTVFKPK+PII VDSVSLLDLNVS+  GV 
Sbjct: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVH 62

Query: 62  LNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMM 121
           L+LSL VDL+V+NPNKV FEYS+STAVV YRGE+VGEAPIP GRL  +GTEKMNLTLT+M
Sbjct: 63  LSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 122

Query: 122 ADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGD 181
            DRML KSEVFSDVVSG+LPISTFARL GKVKV+ V KIHVVAS+SCDL ID+ N S GD
Sbjct: 123 GDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGD 182

Query: 182 QQCQYRTKL 191
           Q CQYRT L
Sbjct: 183 QLCQYRTTL 191

[Close]

BLAST of Clc02G20200 vs. NCBI nr
Match: XP_023007254.1 (uncharacterized protein LOC111499794 [Cucurbita maxima])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 147/193 (76.17%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVS-- 60
           MAA + K  RNICIA+LL LI+ VILILILAFTVFKPK+P I VDSVSLLDLN+SL +  
Sbjct: 1   MAALNRK-RRNICIAVLLSLIVLVILILILAFTVFKPKQPTITVDSVSLLDLNISLNAAR 60

Query: 61  -GVDLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLT 120
            GVDLNL+L+V L+VENPNKVAF++S  TAVVSYRGEEV EAPIP+GRLS +GTEKMNLT
Sbjct: 61  FGVDLNLTLIVQLTVENPNKVAFQHSDGTAVVSYRGEEVAEAPIPSGRLSPDGTEKMNLT 120

Query: 121 LTMMADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNG 180
           LTMMADR+LAKSE+FSDV++G+LPISTFARL+GK+ VIGVFKI VVA SSCDLTIDI N 
Sbjct: 121 LTMMADRLLAKSELFSDVIAGELPISTFARLAGKMTVIGVFKIRVVALSSCDLTIDIRNR 180

Query: 181 SIGDQQCQYRTKL 191
           S+ DQ+C+YRTKL
Sbjct: 181 SVEDQRCEYRTKL 192

[Close]

BLAST of Clc02G20200 vs. NCBI nr
Match: XP_023534551.1 (uncharacterized protein LOC111796093 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 2.1e-65
Identity = 146/193 (75.65%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVS-- 60
           MAA + K  RNICIA+LL LIL VI ILILAFTVFKPK+P I VDS+SLLDLN+SL +  
Sbjct: 1   MAALNRK-RRNICIAVLLSLILLVIFILILAFTVFKPKQPTITVDSLSLLDLNISLNAAR 60

Query: 61  -GVDLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLT 120
            GVDLNL+L+V L++ENPNKVAF++S  TAVVSYRGEEV EAPIP+GRLSA+GTEKMNLT
Sbjct: 61  FGVDLNLTLIVQLTLENPNKVAFQHSDGTAVVSYRGEEVAEAPIPSGRLSADGTEKMNLT 120

Query: 121 LTMMADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNG 180
           LTMMADRMLAKSE+FSDV++G+LPISTFARL+GKV VIGVFKI VVA SSCDLTI+I N 
Sbjct: 121 LTMMADRMLAKSELFSDVLTGELPISTFARLAGKVTVIGVFKIRVVALSSCDLTINIRNR 180

Query: 181 SIGDQQCQYRTKL 191
           ++ DQ+C+YRTKL
Sbjct: 181 NVEDQRCEYRTKL 192

[Close]

BLAST of Clc02G20200 vs. ExPASy TrEMBL
Match: A0A5A7SSE6 (Putative Harpin-induced 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold260G00330 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.6e-69
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGV 60
           MAAP++KLLRN CI ++L LIL V+L+L+LAFTVFKP+RPII VDSVSLLDLNV+L  GV
Sbjct: 8   MAAPASKLLRNFCITLVLSLILLVVLVLVLAFTVFKPQRPIIVVDSVSLLDLNVALTDGV 67

Query: 61  DLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTM 120
           DLNLS+ VDL+VENPNKVAFEYS+STAVV YRGE+VGEAPIP GRL  +GT+KMNLTLT+
Sbjct: 68  DLNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTI 127

Query: 121 MADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIG 180
           M +RML +SEVFSDVVSG+L IST ARL+GKVKV+GV KIHVVAS+SCDL ID+ NGS G
Sbjct: 128 MGERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFG 187

Query: 181 DQQCQYRTKL 191
           DQ CQ+RT++
Sbjct: 188 DQLCQFRTRV 197

[Close]

BLAST of Clc02G20200 vs. ExPASy TrEMBL
Match: A0A1S3CNL0 (uncharacterized protein LOC103502964 OS=Cucumis melo OX=3656 GN=LOC103502964 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.6e-69
Identity = 143/190 (75.26%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGV 60
           MAAP++KLLRN CI ++L LIL V+L+L+LAFTVFKP+RPII VDSVSLLDLNV+L  GV
Sbjct: 1   MAAPASKLLRNFCITLVLSLILLVVLVLVLAFTVFKPQRPIIVVDSVSLLDLNVALTDGV 60

Query: 61  DLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTM 120
           DLNLS+ VDL+VENPNKVAFEYS+STAVV YRGE+VGEAPIP GRL  +GT+KMNLTLT+
Sbjct: 61  DLNLSINVDLTVENPNKVAFEYSKSTAVVIYRGEKVGEAPIPGGRLPGKGTKKMNLTLTI 120

Query: 121 MADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIG 180
           M +RML +SEVFSDVVSG+L IST ARL+GKVKV+GV KIHVVAS+SCDL ID+ NGS G
Sbjct: 121 MGERMLGRSEVFSDVVSGQLSISTLARLAGKVKVMGVVKIHVVASTSCDLIIDVKNGSFG 180

Query: 181 DQQCQYRTKL 191
           DQ CQ+RT++
Sbjct: 181 DQLCQFRTRV 190

[Close]

BLAST of Clc02G20200 vs. ExPASy TrEMBL
Match: A0A0A0KBX8 (LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G212910 PE=4 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 1.2e-66
Identity = 142/189 (75.13%), Postives = 161/189 (85.19%), Query Frame = 0


Query: 2   AAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGVD 61
           AAP++KLL NIC+ + L LIL ++  LILAFTVFKPK+PII VDSVSLLDLNVS+  GV 
Sbjct: 3   AAPASKLLPNICLTLFLSLILLLLFSLILAFTVFKPKQPIIVVDSVSLLDLNVSITDGVH 62

Query: 62  LNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMM 121
           L+LSL VDL+V+NPNKV FEYS+STAVV YRGE+VGEAPIP GRL  +GTEKMNLTLT+M
Sbjct: 63  LSLSLNVDLTVQNPNKVGFEYSESTAVVIYRGEKVGEAPIPGGRLPGKGTEKMNLTLTIM 122

Query: 122 ADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGD 181
            DRML KSEVFSDVVSG+LPISTFARL GKVKV+ V KIHVVAS+SCDL ID+ N S GD
Sbjct: 123 GDRMLGKSEVFSDVVSGQLPISTFARLPGKVKVMNVLKIHVVASTSCDLIIDVKNESFGD 182

Query: 182 QQCQYRTKL 191
           Q CQYRT L
Sbjct: 183 QLCQYRTTL 191

[Close]

BLAST of Clc02G20200 vs. ExPASy TrEMBL
Match: A0A6J1L4F9 (uncharacterized protein LOC111499794 OS=Cucurbita maxima OX=3661 GN=LOC111499794 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 2.0e-66
Identity = 147/193 (76.17%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVS-- 60
           MAA + K  RNICIA+LL LI+ VILILILAFTVFKPK+P I VDSVSLLDLN+SL +  
Sbjct: 1   MAALNRK-RRNICIAVLLSLIVLVILILILAFTVFKPKQPTITVDSVSLLDLNISLNAAR 60

Query: 61  -GVDLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLT 120
            GVDLNL+L+V L+VENPNKVAF++S  TAVVSYRGEEV EAPIP+GRLS +GTEKMNLT
Sbjct: 61  FGVDLNLTLIVQLTVENPNKVAFQHSDGTAVVSYRGEEVAEAPIPSGRLSPDGTEKMNLT 120

Query: 121 LTMMADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNG 180
           LTMMADR+LAKSE+FSDV++G+LPISTFARL+GK+ VIGVFKI VVA SSCDLTIDI N 
Sbjct: 121 LTMMADRLLAKSELFSDVIAGELPISTFARLAGKMTVIGVFKIRVVALSSCDLTIDIRNR 180

Query: 181 SIGDQQCQYRTKL 191
           S+ DQ+C+YRTKL
Sbjct: 181 SVEDQRCEYRTKL 192

[Close]

BLAST of Clc02G20200 vs. ExPASy TrEMBL
Match: A0A6J1G8C1 (uncharacterized protein LOC111451800 OS=Cucurbita moschata OX=3662 GN=LOC111451800 PE=4 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 2.1e-63
Identity = 144/193 (74.61%), Postives = 166/193 (86.01%), Query Frame = 0


Query: 1   MAAPSTKLLRNICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSG- 60
           MAA + K  RNICIA+LL LIL VI ILILAFTVFKPK+P I VDS+SLLDLN+SL +  
Sbjct: 1   MAALNRK-RRNICIAVLLSLILLVIFILILAFTVFKPKQPTITVDSLSLLDLNISLDAAR 60

Query: 61  --VDLNLSLMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLT 120
             VDLNL+L+V L+VENPNKVAF++S  TAVVSYRGEEV EAPIP+GRLSA+GTEKMNLT
Sbjct: 61  FRVDLNLTLIVLLTVENPNKVAFQHSDGTAVVSYRGEEVAEAPIPSGRLSADGTEKMNLT 120

Query: 121 LTMMADRMLAKSEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNG 180
           LTMMADR+LAKSE+ SDV++G+LPISTFARL GKV VIGVFKI VVA SSCDLTIDI   
Sbjct: 121 LTMMADRLLAKSELLSDVLAGELPISTFARLPGKVMVIGVFKIRVVALSSCDLTIDIRKR 180

Query: 181 SIGDQQCQYRTKL 191
           ++ DQ+C+YRTKL
Sbjct: 181 NVEDQRCKYRTKL 192

[Close]

BLAST of Clc02G20200 vs. TAIR 10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 170.6 bits (431), Expect = 1.2e-42
Identity = 89/182 (48.90%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 12  ICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVS---LVSGVDLNLSLMV 71
           IC  ILL L++ ++ I+ILAFT+FKPKRP   +DSV++  L  S   L+  V LNL+L V
Sbjct: 55  ICFTILLILLIAIV-IVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLLNLTLNV 114

Query: 72  DLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMMADRMLAK 131
           DLS++NPN++ F Y  S+A+++YRG+ +GEAP+PA R++A  T  +N+TLT+MADR+L++
Sbjct: 115 DLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSE 174

Query: 132 SEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQCQYRT 191
           +++ SDV++G +P++TF +++GKV V+ +FKI V +SSSCDL+I +++ ++  Q C+Y T
Sbjct: 175 TQLLSDVMAGVIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYST 234

[Close]

BLAST of Clc02G20200 vs. TAIR 10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 62/185 (33.51%), Postives = 111/185 (60.00%), Query Frame = 0


Query: 11  NICIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLN----VSLVSGVDLNLSL 70
           +IC+     ++ T++L L+  FTVF+ K PII ++ V +  L+     + V  +  N+S+
Sbjct: 39  SICVTATSLILTTIVLTLV--FTVFRVKDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISM 98

Query: 71  MVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMMADRML 130
           +VD+SV+NPN  +F+YS +T  + Y+G  VGEA    G+     T +MN+T+ +M DR+L
Sbjct: 99  IVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIMLDRIL 158

Query: 131 AKSEVFSDVV-SGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQCQ 190
           +   +  ++  SG + + ++ R+ GKVK++G+ K HV    +C + ++IT  +I D  C+
Sbjct: 159 SDPGLGREISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDCK 218

[Close]

BLAST of Clc02G20200 vs. TAIR 10
Match: AT3G05975.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-18
Identity = 57/186 (30.65%), Postives = 103/186 (55.38%), Query Frame = 0


Query: 10  RNICIAI--LLCLILTVILILILAFTVFKPKRPIIAV--DSVSLLDLNVSLVSGVDLNLS 69
           R IC  +  ++ ++  + +  ++   VFKPK PI+     +V  +  N+SL   V LN +
Sbjct: 4   RRICCIVSGIIFVLFVIFMTALILAQVFKPKHPILQTVSSTVDGISTNISLPYEVQLNFT 63

Query: 70  LMVDLSVENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMMADRM 129
           L +++ ++NPN   FEY     +V YR   VG   +P+  L A+G+  +   L +  D+ 
Sbjct: 64  LTLEMLLKNPNVADFEYKTVENLVYYRDTLVGNLTLPSSTLPAKGSVLLPCPLFLQLDKF 123

Query: 130 LAK-SEVFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQC 189
           +A   ++  DV+ GK+ + T A++ GK+ ++G+FKI + + S C+L +   +  + DQ C
Sbjct: 124 VANLGDIVQDVLHGKIVMETRAKMPGKITLLGIFKIPLDSISHCNLVLGFPSMVVEDQVC 183

Query: 190 QYRTKL 191
             +TKL
Sbjct: 184 DLKTKL 189

[Close]

BLAST of Clc02G20200 vs. TAIR 10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09
Identity = 47/180 (26.11%), Postives = 89/180 (49.44%), Query Frame = 0


Query: 13  CIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGVDLNLSLMVDLSV 72
           C    L ++  +I  L +  TVF+P+ P I+V SV +   +V+  S   ++ +     +V
Sbjct: 11  CAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSS---VSFTFSQFSAV 70

Query: 73  ENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTMMADRMLAKSE-- 132
            NPN+ AF +  +   + Y G  +G   +PAG + +  T++M  T ++ +  + A S   
Sbjct: 71  RNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQ 130

Query: 133 ------VFSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQC 185
                   SD     + I +   ++G+V+V+G+F   + A  +C + I  ++GSI   +C
Sbjct: 131 ISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 187

[Close]

BLAST of Clc02G20200 vs. TAIR 10
Match: AT1G64450.1 (Glycine-rich protein family )

HSP 1 Score: 51.6 bits (122), Expect = 8.0e-07
Identity = 36/108 (33.33%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 13  CIAILLCLILTVILILILAFTVFKPKRPIIAVDSVSLLDLNVSLVSGVDLNLSLMVDLSV 72
           C    + L++ ++++L++ FTVFKPK P I+V++V L       VS    N S    ++V
Sbjct: 19  CAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSF---AVSNNTANFSFSQYVAV 78

Query: 73  ENPNKVAFEYSQSTAVVSYRGEEVGEAPIPAGRLSAEGTEKMNLTLTM 121
            NPN+  F +  S+  + Y G +VG   IPAG++ +   + M  T T+
Sbjct: 79  RNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAATFTV 123

HSP 2 Score: 40.4 bits (93), Expect = 1.9e-03
Identity = 20/53 (37.74%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 132 FSDVVSGKLPISTFARLSGKVKVIGVFKIHVVASSSCDLTIDITNGSIGDQQC 185
           + + V   + I +   L+G+VKV+ VF  HVVA S C +T+ I +GS+    C
Sbjct: 290 YGNRVGPTMEIESKMELAGRVKVLHVFTHHVVAKSDCRVTVSIADGSVLGFHC 342

The following BLAST results are available for this feature:

BLAST of Clc02G20200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033488.1	5.3e-69	75.26	putative Harpin-induced 1 [Cucumis melo var. makuwa] >TYK26841.1 putative Harpin...	[more]
XP_008465308.1	5.3e-69	75.26	PREDICTED: uncharacterized protein LOC103502964 [Cucumis melo]	[more]
XP_011658424.1	2.5e-66	75.13	uncharacterized protein LOC105435999 [Cucumis sativus] >KGN47220.1 hypothetical ...	[more]
XP_023007254.1	4.2e-66	76.17	uncharacterized protein LOC111499794 [Cucurbita maxima]	[more]
XP_023534551.1	2.1e-65	75.65	uncharacterized protein LOC111796093 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc02G20200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G20200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSE6	2.6e-69	75.26	Putative Harpin-induced 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CNL0	2.6e-69	75.26	uncharacterized protein LOC103502964 OS=Cucumis melo OX=3656 GN=LOC103502964 PE=...	[more]
A0A0A0KBX8	1.2e-66	75.13	LEA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G212910 PE=4 ...	[more]
A0A6J1L4F9	2.0e-66	76.17	uncharacterized protein LOC111499794 OS=Cucurbita maxima OX=3661 GN=LOC111499794...	[more]
A0A6J1G8C1	2.1e-63	74.61	uncharacterized protein LOC111451800 OS=Cucurbita moschata OX=3662 GN=LOC1114518...	[more]

BLAST of Clc02G20200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54200.1	1.2e-42	48.90	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	3.4e-21	33.51	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT3G05975.1	2.0e-18	30.65	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT4G23930.1	2.3e-09	26.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	8.0e-07	33.33	Glycine-rich protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 70..162 e-value: 7.6E-12 score: 45.7
None	No IPR available	GENE3D	2.60.40.1820		coord: 28..172 e-value: 1.8E-13 score: 52.6
None	No IPR available	PANTHER	PTHR31852:SF122	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 6..189
None	No IPR available	PANTHER	PTHR31852	LATE EMBRYOGENESIS ABUNDANT (LEA) HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY	coord: 6..189
None	No IPR available	SUPERFAMILY	117070	LEA14-like	coord: 23..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G20200.1	Clc02G20200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane