Clc02G20000 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G20000
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NAD(P)H-quinone oxidoreductase subunit N
Location	ClcChr02: 32600405 .. 32603297 (-)
RNA-Seq Expression	Clc02G20000
Synteny	Clc02G20000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCTTATTGCCATCACTGTCAGCTTTCAAACTCTACATTTAAAAAGAAGAGCGAAAGCGAAGAGATGAGTCTTATCATCTCCATTTTCATCCACACAAACTACAACAATGGCATCTGCATAACTTCCACCTCGTCTTAATTCTCATCCAATTCCTCAACCATGGCCTTCTTTCTTTCTCCTATCATCATTCTTCCTTCTACATTCGAAATCTCTTTCACAAAACCCCAACGATGGCCCCTGTAGCCTCCATGTTGAACGGAGCAGCCCTAGCGCCACCGCTCCATCTTCAGCCAAGGCCGCACCATCCACTCACCTCCCCGGCGATGGTGCCGATGAGCATGCGGAGGTCGAGTTTCGGCGCCGGCAATGGCAGAGCCGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTTAAGTTCGACCTAGGGCAATGGCTATCGGACGTGGAGGAACACAAAGCCCTAGCTATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACCACTTCCTCGATCTATCCGCTCGCGGCCTTGGCGATCCTGAGACCACTCTCACCAAAATTCACCCAGTTTGCCCTGTCCGTTGAATCGAATCATTACGGCTAATTCACCTTCATCATTGTTTTCTAGGGTTTCGTCGATTGTTCTTACTTTGGCTTCGAATTGCAGGCTCATTTGGGGAAGCAGCCGATCGCTCGGTGGTATTTCCCGCCGGAAGTCGATTACAGGCTCGCGGCTCTGCCTCCGAACTCTAAGGGACTCGTTGTGTGGATAATCGAGGCCAAGGTGAGATTCTTTGAAGTGCCATTAACGATTCAGAATCAGCCAATTTGAGAAGAATGGATTACCGAATTGGAAACACTGTTCAGGTTTTGTCCAAGGCGGAGTTGCAGTTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATCGCCGAGTGCGGGAATTGGTAGGTTTCTTCGCCTTTCATTGTCCAGTCCGAAGTAAATTATTGCATAAATTTTCAAACTTTTATCGATAATTAATCAATTAGACCTTCAAAAACTTGTATTATTGTATAAATAGTAACATTCGAGGAGTCAACTTTTACTGTTTGTAGATTATTATTATAAGCTTCAGGTCCAATTTTAGTCGGCGAAGATGCGCAGTGGTGAACAGTCCTGAGCCCGAGATAGGTGCTTTGTTTGTGAGCCGGAAATTCGAAGATTAGTGATCCCACCGATTTTGATGTTGGAAGTATAATTATAATTATCACTTATTTTAAAGGTGTTTTTTTTTTGCGATTTGTCTTAATAATTTTATAAATCTGGTTTAAATTATTTTTTTAAACAATTTTTTTTGGCGGGCGAGAGAGGCTTCAAAAATGCTTTTAATTCTTTACAAAGATGAATGTTATTTTGATGTTTTCAAAATTTTGATTTAAAAATCAAATTTGAATGACAACCGAGAGATTTTCAGTTAACCAACTTTAAGATTTCAATTTTGGACCAATATTTCAGAATGGAATAAGGGTATTTTAAAAAGAAATGTAGAAGTTTATGGTATGTTTAGAAATTTAGTCTTATTTTTCTTTTAATTTTGAGGAATGACTAGTGTGAGATAGCTGTGGGGAAGAAGTTTTCAGCTCCAACAATAAGAGTGAAGGGCTAAAAGTAAGATTAACCATAATTAACGTGTACTAGTTATATTCCTATGGAGGAGTTGGTGTTGTTGAAGACCCCATATTCGTAGGTGTCGTTGAAGATCCCTCATTAAAAAAATCGAAGGACATCGTGCTTTTTATAAGATAGATAGACTACTCCACTCATTTTTAGTTGGTTTTGATGGAAGTCCATGTTATCTAATATGTGCTTTAACTACTTGCCTATGTTGGTCTGTGGTCTTAATCAAAAGCCGGATGATATATAAACGTTTTATAATCTTGATTAGTTGAATTTGTAATTTACTTTGGAATTTTTATTAAAATTGGTTAAATTCAGTTGGGCTTCTTCTCTTACTGTCAATTAGTTTTGAGATGAAATTACATGTTATCTTATAGGTGTTATGAGGTCTTATCTTTTCAATATAGGATTCTCGATATGTCATTTTAAGATGATATCTATTTAGGTTTACCATTTATTTAGAGTTCCATGTGCTTTGATAGATTAACATAGGACTGGATCTCAAAATTAATCGATAATGAGAGAAGTAACTCATATATTATAAGATTTAGTTATCTTGTCGTAGGAGGAAGTTCATGTGGAAGCCGCTTAAGGAGATTGCAGGGGCTTGAAGGCGCTTCTGAATGACCAGGAGAGTAGGAGATTAATTCCTCCATAAACATGAAGAATACACTTTTGTTTTTCTTCTCTCTCAAGTAATTAACTCAAATTATTGGTTAAATAGATGAGCACTGCAGATTCCACCTCTCCCCAAATTGAAAAGGAAGAAGATTATGAAGTTATGTTATTTAGAATGAATTGCAAATAATATTATTGTATTTCTCATGCAATTATTATTACCTCAAAGAATGGAATCCTTGGTGTCAACTTTTCTCAAGCCTCTAGTGCACTTAACAGGATGTTTGGAGTGAAGAGAAGAGATGAGATGAGATGAGTTGAGATATGATATCAACTCATTGTTTGGGAGACTACAACATTTTATATCATATCCAACAGCAATACCTAAGTTTTGTTAAAACGTTAAATTTTAGTTTTTTTTTATTTATTAGTTCATAGAATTTTATAGTCGTTCTTTAGGGTAATTTAACATTAATAAAATCACTTTTATTGTATAAGAAATCAATCAATTTATATGTAAAAATACTTTTAAAAAAGATGACTTAACTAGAAAC

mRNA sequence

CAACCTTATTGCCATCACTGTCAGCTTTCAAACTCTACATTTAAAAAGAAGAGCGAAAGCGAAGAGATGAGTCTTATCATCTCCATTTTCATCCACACAAACTACAACAATGGCATCTGCATAACTTCCACCTCGTCTTAATTCTCATCCAATTCCTCAACCATGGCCTTCTTTCTTTCTCCTATCATCATTCTTCCTTCTACATTCGAAATCTCTTTCACAAAACCCCAACGATGGCCCCTGTAGCCTCCATGTTGAACGGAGCAGCCCTAGCGCCACCGCTCCATCTTCAGCCAAGGCCGCACCATCCACTCACCTCCCCGGCGATGGTGCCGATGAGCATGCGGAGGTCGAGTTTCGGCGCCGGCAATGGCAGAGCCGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTTAAGTTCGACCTAGGGCAATGGCTATCGGACGTGGAGGAACACAAAGCCCTAGCTATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACCACTTCCTCGATCTATCCGCTCGCGGCCTTGGCGATCCTGAGACCACTCTCACCAAAATTCACCCAGTTTGCCCTGCTCATTTGGGGAAGCAGCCGATCGCTCGGTGGTATTTCCCGCCGGAAGTCGATTACAGGCTCGCGGCTCTGCCTCCGAACTCTAAGGGACTCGTTGTGTGGATAATCGAGGCCAAGGTTTTGTCCAAGGCGGAGTTGCAGTTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATCGCCGAGTGCGGGAATTGGAGGAAGTTCATGTGGAAGCCGCTTAAGGAGATTGCAGGGGCTTGAAGGCGCTTCTGAATGACCAGGAGAGTAGGAGATTAATTCCTCCATAAACATGAAGAATACACTTTTGTTTTTCTTCTCTCTCAAGTAATTAACTCAAATTATTGGTTAAATAGATGAGCACTGCAGATTCCACCTCTCCCCAAATTGAAAAGGAAGAAGATTATGAAGTTATGTTATTTAGAATGAATTGCAAATAATATTATTGTATTTCTCATGCAATTATTATTACCTCAAAGAATGGAATCCTTGGTGTCAACTTTTCTCAAGCCTCTAGTGCACTTAACAGGATGTTTGGAGTGAAGAGAAGAGATGAGATGAGATGAGTTGAGATATGATATCAACTCATTGTTTGGGAGACTACAACATTTTATATCATATCCAACAGCAATACCTAAGTTTTGTTAAAACGTTAAATTTTAGTTTTTTTTTATTTATTAGTTCATAGAATTTTATAGTCGTTCTTTAGGGTAATTTAACATTAATAAAATCACTTTTATTGTATAAGAAATCAATCAATTTATATGTAAAAATACTTTTAAAAAAGATGACTTAACTAGAAAC

Coding sequence (CDS)

ATGGCCCCTGTAGCCTCCATGTTGAACGGAGCAGCCCTAGCGCCACCGCTCCATCTTCAGCCAAGGCCGCACCATCCACTCACCTCCCCGGCGATGGTGCCGATGAGCATGCGGAGGTCGAGTTTCGGCGCCGGCAATGGCAGAGCCGCGACGGTGAGATGCGAGGGAATCGGAATTGGCGATTTCATCGGCGGAGATTTGCTTAAGTTCGACCTAGGGCAATGGCTATCGGACGTGGAGGAACACAAAGCCCTAGCTATTTACTCGCCGCATGAAGGCGGATACGAAGGCCGATACCTAAATCGCCTCCGCTACCAGGGCTACCACTTCCTCGATCTATCCGCTCGCGGCCTTGGCGATCCTGAGACCACTCTCACCAAAATTCACCCAGTTTGCCCTGCTCATTTGGGGAAGCAGCCGATCGCTCGGTGGTATTTCCCGCCGGAAGTCGATTACAGGCTCGCGGCTCTGCCTCCGAACTCTAAGGGACTCGTTGTGTGGATAATCGAGGCCAAGGTTTTGTCCAAGGCGGAGTTGCAGTTCCTTGCTTTGCTGCCGACTCTCCGGCCGAAAGTCCGAGTCATCGCCGAGTGCGGGAATTGGAGGAAGTTCATGTGGAAGCCGCTTAAGGAGATTGCAGGGGCTTGA

Protein sequence

MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA

Homology

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BLAST of Clc02G20000 vs. NCBI nr
Match: XP_008456262.1 (PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis melo])

HSP 1 Score: 420.6 bits (1080), Expect = 8.0e-114
Identity = 202/215 (93.95%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAPVASM NGA LAPPLHL    HHPLTSPAMVP++ RRSSF  GNGRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

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BLAST of Clc02G20000 vs. NCBI nr
Match: XP_038900583.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Benincasa hispida])

HSP 1 Score: 417.2 bits (1071), Expect = 8.9e-113
Identity = 202/215 (93.95%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAPVASMLNGAALAPPL LQPR  HP T P  VPMS+RRSSF A NGRAATVRCEGIGIG
Sbjct: 1   MAPVASMLNGAALAPPLRLQPRLQHPRTLPFTVPMSVRRSSFAARNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRP VRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPNVRVIAECGNWRKFMWKPLKEIAGA 215

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BLAST of Clc02G20000 vs. NCBI nr
Match: XP_004139925.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis sativus] >KGN46772.1 hypothetical protein Csa_020955 [Cucumis sativus])

HSP 1 Score: 414.5 bits (1064), Expect = 5.7e-112
Identity = 198/215 (92.09%), Postives = 204/215 (94.88%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAP+ASM NGA LAPPLH     HHPLTSPAM+P++ RRSS   GNGRAATVRCEGIGIG
Sbjct: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

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BLAST of Clc02G20000 vs. NCBI nr
Match: XP_023007243.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita maxima])

HSP 1 Score: 402.5 bits (1033), Expect = 2.3e-108
Identity = 194/214 (90.65%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           M P+ASMLNGAALAP LHL PR   PLTSPA + +  RR+ FG G GRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPLTSPATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

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BLAST of Clc02G20000 vs. NCBI nr
Match: XP_023533875.1 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 396.7 bits (1018), Expect = 1.2e-106
Identity = 192/214 (89.72%), Postives = 198/214 (92.52%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           M P+ASMLNGAALAP LHL PR   P TS A + +  RR+ FG G GRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

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BLAST of Clc02G20000 vs. ExPASy Swiss-Prot
Match: Q9LVM2 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ndhN PE=2 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 3.3e-78
Identity = 133/166 (80.12%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 48  RAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQG 107
           R+  V+C    I D+IGGDL+K D+GQWL DVEEHKA+AIY+PHEGGYEGRYLNRL+ QG
Sbjct: 40  RSTGVKCS--SIADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQG 99

Query: 108 YHFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVW 167
           Y+FLD+SARGLGDPETTL K +PVCPAHLGKQPIARWY+PPEVDYRLAALPP++KGLVVW
Sbjct: 100 YYFLDISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVW 159

Query: 168 IIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIA 214
           ++EAKVLSK+ELQFLALLP+LRP VRVIAECGNWRKF+WKPL EIA
Sbjct: 160 VLEAKVLSKSELQFLALLPSLRPNVRVIAECGNWRKFVWKPLAEIA 203

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BLAST of Clc02G20000 vs. ExPASy Swiss-Prot
Match: B8HUU1 (NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=ndhN PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 5.9e-35
Identity = 71/149 (47.65%), Postives = 99/149 (66.44%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGDPETTLTKIHPVCP 133
           Q++ D+E+  AL IY P EGG+EGRY  RLR  GY  L +SA GLGD  + LT++H V P
Sbjct: 9   QFIQDLEKSGALGIYVPSEGGFEGRYQRRLRAAGYSTLHISAPGLGDLPSYLTQVHGVRP 68

Query: 134 AHLGKQP-------IARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGK         +  ++ PP V+Y L  LPP ++GLV+W+I+ K LS+ EL +L++LP
Sbjct: 69  PHLGKSTQGNTDWGVKTFFLPPLVNYHLENLPPKARGLVLWMIDGKRLSRQELAYLSILP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              PKV+++ E G  R+F W+PLKE+A A
Sbjct: 129 AQEPKVKIVIELGGDRQFRWQPLKEMAAA 157

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BLAST of Clc02G20000 vs. ExPASy Swiss-Prot
Match: B7JYJ3 (NAD(P)H-quinone oxidoreductase subunit N OS=Rippkaea orientalis (strain PCC 8801) OX=41431 GN=ndhN PE=3 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.2e-34
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 0


Query: 79  VEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGDPETTLTKIHPVCPAHLGK 138
           +E+  +LA+Y+P EGG+EGRY  RLR  GYH   L+ARGLGD    L  +H V P HLGK
Sbjct: 14  LEKSGSLAVYAPLEGGFEGRYQRRLRTNGYHTFSLTARGLGDVSAYLMGVHGVRPPHLGK 73

Query: 139 QPIAR-------WYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQFLALLPTLRPK 198
           + I +       ++ PP   Y+L  LPP SKGLV+WI+E  +LS+ EL++LA LPTL P+
Sbjct: 74  KNIGQEAAVGPVYFVPPIAAYQLETLPPKSKGLVLWILEGFILSQTELEYLANLPTLEPR 133

Query: 199 VRVIAECGNWRKFMWKPLKEI 213
           ++V+ E G  R F WKPL E+
Sbjct: 134 LKVVIELGGERYFSWKPLPEV 154

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BLAST of Clc02G20000 vs. ExPASy Swiss-Prot
Match: Q31L05 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=ndhN PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 73/149 (48.99%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L  LP N+KGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              P+++V+ E G  R F W+PL  +A A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEA 157

[Close]

BLAST of Clc02G20000 vs. ExPASy Swiss-Prot
Match: Q5N0W6 (NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=ndhN PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.6e-32
Identity = 73/149 (48.99%), Postives = 91/149 (61.07%), Query Frame = 0


Query: 74  QWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGDPETTLTKIHPVCP 133
           ++L  +E+  ALA+Y+P EGGYEGRYL RLR +GY  L  SARGLGDP   L  IH V P
Sbjct: 9   KFLRALEQEGALAVYAPLEGGYEGRYLRRLRSKGYSALTYSARGLGDPAQFLMDIHGVRP 68

Query: 134 AHLGKQPIAR-------WYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQFLALLP 193
            HLGKQ I          Y  P V Y L  LP N+KGLV+W++E  VLS  EL +   LP
Sbjct: 69  PHLGKQTIGNEAAVGRVEYVLPLVGYPLQNLPANAKGLVLWLLEGHVLSPQELSYFVTLP 128

Query: 194 TLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
              P+++V+ E G  R F W+PL  +A A
Sbjct: 129 QAEPRLKVVIEMGGDRGFSWQPLAAVAEA 157

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BLAST of Clc02G20000 vs. ExPASy TrEMBL
Match: A0A1S3C430 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103496258 PE=4 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 3.9e-114
Identity = 202/215 (93.95%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAPVASM NGA LAPPLHL    HHPLTSPAMVP++ RRSSF  GNGRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

[Close]

BLAST of Clc02G20000 vs. ExPASy TrEMBL
Match: A0A0A0KEC3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133810 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 2.8e-112
Identity = 198/215 (92.09%), Postives = 204/215 (94.88%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAP+ASM NGA LAPPLH     HHPLTSPAM+P++ RRSS   GNGRAATVRCEGIGIG
Sbjct: 1   MAPLASMFNGAPLAPPLHFHSSRHHPLTSPAMLPINNRRSSLRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 216
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAGA 215

[Close]

BLAST of Clc02G20000 vs. ExPASy TrEMBL
Match: A0A6J1L763 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111499786 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 194/214 (90.65%), Postives = 200/214 (93.46%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           M P+ASMLNGAALAP LHL PR   PLTSPA + +  RR+ FG G GRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPLTSPATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLEALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Clc02G20000 vs. ExPASy TrEMBL
Match: A0A6J1G6N3 (NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111451247 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 7.8e-107
Identity = 192/214 (89.72%), Postives = 198/214 (92.52%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           M P+ASMLNGAALAP LHL PR   P TS A + +  RR+ FG G GRAATVRCEGIGIG
Sbjct: 1   MPPLASMLNGAALAPSLHLHPRRLRPPTSAATLQVIGRRTRFGTGKGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRL ALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLDALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 215
           FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG
Sbjct: 181 FLALLPTLRPKVRVIAECGNWRKFMWKPLKEIAG 214

[Close]

BLAST of Clc02G20000 vs. ExPASy TrEMBL
Match: A0A5A7SWJ9 (NAD(P)H-quinone oxidoreductase subunit N OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00760 PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 4.3e-105
Identity = 188/201 (93.53%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MAPVASMLNGAALAPPLHLQPRPHHPLTSPAMVPMSMRRSSFGAGNGRAATVRCEGIGIG 60
           MAPVASM NGA LAPPLHL    HHPLTSPAMVP++ RRSSF  GNGRAATVRCEGIGIG
Sbjct: 1   MAPVASMFNGAPLAPPLHLHSSRHHPLTSPAMVPINNRRSSFRPGNGRAATVRCEGIGIG 60

Query: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYHFLDLSARGLGD 120
           DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGY+FLDLSARGLGD
Sbjct: 61  DFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQGYYFLDLSARGLGD 120

Query: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVWIIEAKVLSKAELQ 180
           PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPN+KGLVVWIIEAKVLSKAELQ
Sbjct: 121 PETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNAKGLVVWIIEAKVLSKAELQ 180

Query: 181 FLALLPTLRPKVRVIAECGNW 202
           FLALLPTLRPKVRVIAECGNW
Sbjct: 181 FLALLPTLRPKVRVIAECGNW 201

[Close]

BLAST of Clc02G20000 vs. TAIR 10
Match: AT5G58260.1 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor )

HSP 1 Score: 292.7 bits (748), Expect = 2.3e-79
Identity = 133/166 (80.12%), Postives = 152/166 (91.57%), Query Frame = 0


Query: 48  RAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQG 107
           R+  V+C    I D+IGGDL+K D+GQWL DVEEHKA+AIY+PHEGGYEGRYLNRL+ QG
Sbjct: 40  RSTGVKCS--SIADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQG 99

Query: 108 YHFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVW 167
           Y+FLD+SARGLGDPETTL K +PVCPAHLGKQPIARWY+PPEVDYRLAALPP++KGLVVW
Sbjct: 100 YYFLDISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVW 159

Query: 168 IIEAKVLSKAELQFLALLPTLRPKVRVIAECGNWRKFMWKPLKEIA 214
           ++EAKVLSK+ELQFLALLP+LRP VRVIAECGNWRKF+WKPL EIA
Sbjct: 160 VLEAKVLSKSELQFLALLPSLRPNVRVIAECGNWRKFVWKPLAEIA 203

[Close]

BLAST of Clc02G20000 vs. TAIR 10
Match: AT5G58260.2 (oxidoreductases, acting on NADH or NADPH, quinone or similar compound as acceptor )

HSP 1 Score: 219.5 bits (558), Expect = 2.5e-57
Identity = 98/126 (77.78%), Postives = 114/126 (90.48%), Query Frame = 0


Query: 48  RAATVRCEGIGIGDFIGGDLLKFDLGQWLSDVEEHKALAIYSPHEGGYEGRYLNRLRYQG 107
           R+  V+C    I D+IGGDL+K D+GQWL DVEEHKA+AIY+PHEGGYEGRYLNRL+ QG
Sbjct: 40  RSTGVKCS--SIADYIGGDLVKPDIGQWLQDVEEHKAIAIYAPHEGGYEGRYLNRLKMQG 99

Query: 108 YHFLDLSARGLGDPETTLTKIHPVCPAHLGKQPIARWYFPPEVDYRLAALPPNSKGLVVW 167
           Y+FLD+SARGLGDPETTL K +PVCPAHLGKQPIARWY+PPEVDYRLAALPP++KGLVVW
Sbjct: 100 YYFLDISARGLGDPETTLLKNYPVCPAHLGKQPIARWYYPPEVDYRLAALPPSAKGLVVW 159

Query: 168 IIEAKV 174
           ++EAKV
Sbjct: 160 VLEAKV 163

The following BLAST results are available for this feature:

BLAST of Clc02G20000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456262.1	8.0e-114	93.95	PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis melo...	[more]
XP_038900583.1	8.9e-113	93.95	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Benincasa hispida]	[more]
XP_004139925.1	5.7e-112	92.09	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucumis sativus] >KGN46...	[more]
XP_023007243.1	2.3e-108	90.65	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita maxima]	[more]
XP_023533875.1	1.2e-106	89.72	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Cucurbita pepo subsp. p...	[more]

BLAST of Clc02G20000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVM2	3.3e-78	80.12	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Arabidopsis thaliana ...	[more]
B8HUU1	5.9e-35	47.65	NAD(P)H-quinone oxidoreductase subunit N OS=Cyanothece sp. (strain PCC 7425 / AT...	[more]
B7JYJ3	2.2e-34	49.65	NAD(P)H-quinone oxidoreductase subunit N OS=Rippkaea orientalis (strain PCC 8801...	[more]
Q31L05	1.6e-32	48.99	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus elongatus (strain PCC ...	[more]
Q5N0W6	1.6e-32	48.99	NAD(P)H-quinone oxidoreductase subunit N OS=Synechococcus sp. (strain ATCC 27144...	[more]

BLAST of Clc02G20000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C430	3.9e-114	93.95	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucumis melo OX=3656 ...	[more]
A0A0A0KEC3	2.8e-112	92.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G133810 PE=4 SV=1	[more]
A0A6J1L763	1.1e-108	90.65	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita maxima OX=3...	[more]
A0A6J1G6N3	7.8e-107	89.72	NAD(P)H-quinone oxidoreductase subunit N, chloroplastic OS=Cucurbita moschata OX...	[more]
A0A5A7SWJ9	4.3e-105	93.53	NAD(P)H-quinone oxidoreductase subunit N OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of Clc02G20000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58260.1	2.3e-79	80.12	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as accepto...	[more]
AT5G58260.2	2.5e-57	77.78	oxidoreductases, acting on NADH or NADPH, quinone or similar compound as accepto...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR020874	NAD(P)H-quinone oxidoreductase, subunit N	PFAM	PF11909	NdhN	coord: 74..211 e-value: 1.3E-56 score: 190.5
IPR020874	NAD(P)H-quinone oxidoreductase, subunit N	PANTHER	PTHR35515	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT N, CHLOROPLASTIC	coord: 35..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G20000.1	Clc02G20000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0010258	NADH dehydrogenase complex (plastoquinone) assembly
cellular_component	GO:0016020	membrane
molecular_function	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
molecular_function	GO:0048038	quinone binding