Clc02G19990 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19990
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ycf54-like protein
Location	ClcChr02: 32595586 .. 32598631 (+)
RNA-Seq Expression	Clc02G19990
Synteny	Clc02G19990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATTTGATATTGTAATAGATAACTAGATAAGGTTCCGTCACTCTGTCAGAAGATTTTGCTGATTAATTTAGTTAGCCATTTCATCCATTTTTGTTTTGCTCAATTTCTCCAGTCACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTTGGCCAAATGTTAGGCACTGTGAATCTTGTCATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCATTCTGCTGCCGTGAAATCTCTTGCGAGCTCCAGAATTGGTCACCACAACCACTGCCGGACTCTTCCATTGCCTTTGGGATTGCCTTCTGCTTCTATTTCCAGCTCCTGCTTCTTGTCTCCGCCAGGTTCTTCTCTCTCTTCGCCCTTCAGCACAGCAATCGCCGCCGTTAACTCCGATTCGGCTGACAAGGTATTCTTTAGCTTCCGAACTTCTTCCGCATTTCGCTTCTCCTCAATTTCTAAACTCCGACGATGTACGTCATTGTTCGTATCTAGGTTTAGATCAATCGATATATCAGGGGTTAGGTTTTTCAAAATTGTTGATATCCATGGAAATCTAGGGATGTTGTGTGCATTTTCGAAGTTGAGTCGTTTACATTTAACCTCGATTTCGATCATAATTTGTGCGTCGTGCGTTTGCCCTAAACCGTTCGGGAAATTTGGGAGTGTGGTAGCGAAATTCAATGGCTTTTATGTTGTTTCCAATGCAGCAAGAATCGAACAAGTATTATTTTGTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTCCTGTTCGAGCGGCTTCGGTACTATGGCGAGCGTAACAAGGAGCAGGACTTTTGGCTTGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTTCCTGGATTACGTAAGTTACCTCCTTTCATTTTGCATTCTTGGTTTATCTTTACAACAGTACATTATTAAATATTATTAAATAGGCTAAATTATATATATATATAATACCTCTTAACTTTGTTATTTGGTTCAAATATTTTCAAAACTTGCAATATTACACTTGTTATTGACATTTCAAAATTACCATTAACATTACCATTAAAGTAGAATTTTTTTAGACTTGGGATGAGAATTGGAAATATCGTTATACTTTCAAAAGTTACAATAATGCCGGTAACTTCTTTCACTAACGTTCTTCTCCTTTTATTTACGTTTCAAAATTTTCCTTAGAGAAGAGGTCTTTTAAAATTTGATACGATGGTGATAAGTACTTCTAAAACAAATCACAAAGTTGAGAGATACTTTTTATAATTTAGCTATTGAATGGGCGAGGATAATCTCGGGATCATGACATAACACTAATGTCTGACCAGTCAAATTATGGTCAATTCCCATTCGCATCATTTGCATTGGTATATTTAGTTCTTGCAGCTCCTTGACTCTCGGAAATTTTGATGCCTAACGGATTGTTCGTTTGCTTTTCGCTTATTTATATATACTCATAGATTTTAGTTTAGAGGAGACAATAATATAGTTAGAATGGGAAAAAGGGATATGAAAACTAGTTTAAGAAAAATGCTTGATCTTGCAAACAACTGGCTAGCTAGAAGCTGCATTGCATCTTAATTTTCCAGTGGTTTGTTATTTGCACATGCTGACAGATTAACATTTATTCCATCTGTTCTTGGTCAGTTCTTTTGTTTCCCTTTCTTTTCTTCAGTGCTTTAATGCACACTTATATCCTTGTGGAGCTGTTTAGCCACAGAAACTGAAACACAACTCTGCTTTTGATTACTTCATGTAAAATGCTGCATGTTAGATGTAATATATTATTGGTTCGTGTAGTTTGAGTTTCAATCTATTTTAATCAACACACTTTCACAAATTTAAATTTAGTTCATGTACTTTCAGTAAATATTAAGATTCGTCCCTACGATTAGTTCCAAATAATAATAACTATTTCCATGCAAGAGAAGACACAATGTAAACATATCTCCACAACTCAAAAAACGAAACCTAATAGAAACTAAATGTATCTTAGAAAAACTTAACAACAAACTAACACCATTTTTTATTGAGAAATCTCAAGTTGGAAAAATCAAGGAATCTCACGATCTTTATAAGTTAGATGAGTTACTCCTCTCATCATTAATTGATTTTGAGATGGAACCCCATGTTTTCTAATATGGTATCAATTCCATATAGCCCAAATGGGCATTTGGTCCAAAAACAAAAAATTGAATTCAATCCAAGTATGGTGAGCCGAAAGAAGCTCCATTCTTGAGTGGGGCATGTTGAGAATCCCACATTAGAAAAATCAAAGACCTCACAATCTTTATAAGATAGATGAGTCATTTTTCTCATTGCCAATTAGTTTTTAGATGAAATTCAATGTTATCTAATAATTATGAACTTTAATGAAAGCACGGGACTAAATTTTGACATTTGAAATTCGTTTAAAATGGAATGAGATCTAAAGTAAAAGGATCCAACAGTGGAAGTTCTTACAACCACTGCAAGTAAACCTCAGAACTCTTGCATCTCCTGCAACAAAGTCTTTTACTTGACAGTCTATTTTGGTCCCTTTTTCTTGTTGATATGGGCAGGTTCATGAAGCTGAGACTGGATCGAGTTTTAGTGGAAAGCTATGAAGCCAACAGCTTAGAAGAAGCATTGGCTTCGACCCCGACCAACCTCGAGTTTGAGAAGCCTGAAAAATGGGTGGCTCCCTATTCCAAATATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCGGTGACAAAAGCAGAAGCAAAAGTATAAGCTGTATGTAGCTTTAATTTGTTTATTTACTAGTCTTTTTTACCCTCTCTGATCAAGTATGAATTTTGATGGTGTGAGGATTTCGTAAAACATCTGTAGTTGAAGGCAGCGTTTTTGGTAATATAGTGTGGTAAAAGTAAATCGTATTTCGAAAGGCTCTAATATTAATTTTAAACTTTCAACTTTTGTAATATTAATTTGTG

mRNA sequence

ATGTCACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTTGGCCAAATGTTAGGCACTGTGAATCTTGTCATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCATTCTGCTGCCGTGAAATCTCTTGCGAGCTCCAGAATTGGTCACCACAACCACTGCCGGACTCTTCCATTGCCTTTGGGATTGCCTTCTGCTTCTATTTCCAGCTCCTGCTTCTTGTCTCCGCCAGGTTCTTCTCTCTCTTCGCCCTTCAGCACAGCAATCGCCGCCGTTAACTCCGATTCGGCTGACAAGCAAGAATCGAACAAGTATTATTTTGTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTCCTGTTCGAGCGGCTTCGGTACTATGGCGAGCGTAACAAGGAGCAGGACTTTTGGCTTGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTTCCTGGATTACGTTCATGAAGCTGAGACTGGATCGAGTTTTAGTGGAAAGCTATGAAGCCAACAGCTTAGAAGAAGCATTGGCTTCGACCCCGACCAACCTCGAGTTTGAGAAGCCTGAAAAATGGGTGGCTCCCTATTCCAAATATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCGGTGACAAAAGCAGAAGCAAAAGTATAAGCTGTATGTAGCTTTAATTTGTTTATTTACTAGTCTTTTTTACCCTCTCTGATCAAGTATGAATTTTGATGGTGTGAGGATTTCGTAAAACATCTGTAGTTGAAGGCAGCGTTTTTGGTAATATAGTGTGGTAAAAGTAAATCGTATTTCGAAAGGCTCTAATATTAATTTTAAACTTTCAACTTTTGTAATATTAATTTGTG

Coding sequence (CDS)

ATGTCACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCAGTTGGCCAAATGTTAGGCACTGTGAATCTTGTCATGGGCTCATCTTCAGCCGCCATGGCTACTCCAACGCATTCTGCTGCCGTGAAATCTCTTGCGAGCTCCAGAATTGGTCACCACAACCACTGCCGGACTCTTCCATTGCCTTTGGGATTGCCTTCTGCTTCTATTTCCAGCTCCTGCTTCTTGTCTCCGCCAGGTTCTTCTCTCTCTTCGCCCTTCAGCACAGCAATCGCCGCCGTTAACTCCGATTCGGCTGACAAGCAAGAATCGAACAAGTATTATTTTGTAGTTGCAAATGCGAAGTTCATGCTTGATGAGGAGGAGCATTTCAAAGAACTCCTGTTCGAGCGGCTTCGGTACTATGGCGAGCGTAACAAGGAGCAGGACTTTTGGCTTGTCATTGAGCCTAAGTTCTTGGACAAGTTTCCTAATATCACAAAGAGATTGCAGAGACCTGCCGTTGCTCTTGTTTCAACCAATAGTTCCTGGATTACGTTCATGAAGCTGAGACTGGATCGAGTTTTAGTGGAAAGCTATGAAGCCAACAGCTTAGAAGAAGCATTGGCTTCGACCCCGACCAACCTCGAGTTTGAGAAGCCTGAAAAATGGGTGGCTCCCTATTCCAAATATGAATATGGATGGTGGGAGGCTTTCTTGCCGCCGGTGACAAAAGCAGAAGCAAAAGTATAA

Protein sequence

MSQEEEEEEEEEEAVGQMLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLSPPGSSLSSPFSTAIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV

Homology

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BLAST of Clc02G19990 vs. NCBI nr
Match: XP_038900405.1 (uncharacterized protein LOC120087636 [Benincasa hispida])

HSP 1 Score: 420.2 bits (1079), Expect = 1.2e-113
Identity = 214/226 (94.69%), Postives = 220/226 (97.35%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPTH  AVKSLASSRIG+H+HCRT+ LPLGLPS+SISSSCFLS
Sbjct: 1   MLGTVNLVMGSSSAAMATPTHCTAVKSLASSRIGYHSHCRTISLPLGLPSSSISSSCFLS 60

Query: 78  PPGSSLSSPFSTAIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRYYGE 137
           PPGSSLSSPF+T IAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLR YGE
Sbjct: 61  PPGSSLSSPFNTEIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRNYGE 120

Query: 138 RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVESYEANS 197
           RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL ESYEANS
Sbjct: 121 RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAESYEANS 180

Query: 198 LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV
Sbjct: 181 LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Clc02G19990 vs. NCBI nr
Match: XP_022944632.1 (uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo] >XP_023512537.1 uncharacterized protein LOC111777251 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 2.7e-102
Identity = 204/232 (87.93%), Postives = 210/232 (90.52%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPT  AAVKSLASS+IG HNHCRT  LPLGL SAS SS+ F S
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 78  PPGSSLSSPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFER 137
             GSSLS  F+TAIAAVN      SDSADK+ESNKYYF+VANAKFMLDEEEHFKELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 138 LRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVE 197
           LR YGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL E
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 198 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

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BLAST of Clc02G19990 vs. NCBI nr
Match: XP_008456263.1 (PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo] >KAA0033541.1 uncharacterized protein E6C27_scaffold261G00920 [Cucumis melo var. makuwa] >TYJ95646.1 uncharacterized protein E5676_scaffold104G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 381.3 bits (978), Expect = 6.1e-102
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGT NLVMGSSSAA+AT TH AAVKSL +S IGHHN   T  LPL LPS SI SSCFLS
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 78  PPGSSLSSPFSTAIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRYYGE 137
            P SSLSSPF+TAIAAVNSDSADKQES KYYF+VANAKFMLDEEEHFKELLFERLR YGE
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERLRNYGE 120

Query: 138 RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVESYEANS 197
           RNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+S+WITFMKLRLDRVL ESYEANS
Sbjct: 121 RNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 198 LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           +EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV
Sbjct: 181 IEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

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BLAST of Clc02G19990 vs. NCBI nr
Match: XP_022986936.1 (uncharacterized protein LOC111484525 [Cucurbita maxima])

HSP 1 Score: 380.6 bits (976), Expect = 1.0e-101
Identity = 205/233 (87.98%), Postives = 210/233 (90.13%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPT  AAVKSLASS+IG HNHCRT  LPLGL SAS SSS FLS
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 78  PPGSSLS-SPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFE 137
             GSSLS   F TA+AAVN      SDSADK+ESNKYYF+VANAKFMLDEEEHFKELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 138 RLRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLV 197
           RLR YGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL 
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180

Query: 198 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

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BLAST of Clc02G19990 vs. NCBI nr
Match: KAG7010462.1 (putative protein ycf54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 379.4 bits (973), Expect = 2.3e-101
Identity = 202/232 (87.07%), Postives = 208/232 (89.66%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPT  AAVKSLASS+IG HNHCRT  LPLGL SAS SS+ F S
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 78  PPGSSLSSPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFER 137
             GSSLS  F+TAIAAVN      SDS DK+ESNKYYF+VANAKFMLDEEEHFKELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSTDKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 138 LRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVE 197
           LR YGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL E
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 198 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV K EAKV
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKTEAKV 232

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BLAST of Clc02G19990 vs. ExPASy Swiss-Prot
Match: P72777 (Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=slr1780 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-14
Identity = 49/102 (48.04%), Postives = 70/102 (68.63%), Query Frame = 0


Query: 107 YYFVVANAKFMLDEEEHFKELLFERLRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRP 166
           YY+ +A+ KF+L EEE F+E+L ER R YGE+NKE DFW VI+P FL+       + + P
Sbjct: 31  YYYALASQKFLL-EEEPFEEVLKERRRDYGEKNKEIDFWQVIQPAFLNAPELAEAKAKAP 90

Query: 167 A--VALVSTNSSWITFMKLRLDRVLVESYEA--NSLEEALAS 205
              VA+VSTN S+I ++KLRL+ VL   +EA  +++ + LAS
Sbjct: 91  EKNVAIVSTNKSFIVWVKLRLEYVLTGEFEAPSDAIPDPLAS 131

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BLAST of Clc02G19990 vs. ExPASy Swiss-Prot
Match: P51204 (Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.3e-11
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 107 YYFVVANAKFMLDEEEHFKELLFERLRYYGERNKEQDFWLVIEPKFLD-----KFPNITK 166
           YYF +A+  F+L EE   +E+  ER+ YY   NKE DFWL+  PKFL+     KF N+  
Sbjct: 4   YYFALASQNFLLSEEP-LEEVFRERINYYQSNNKEIDFWLIPNPKFLNKPAMIKFKNL-- 63

Query: 167 RLQRPAVALVSTNSSWITFMKLRLDRVLVESYE 195
            +   A+A++STNS +I ++KLR+  V +  +E
Sbjct: 64  -VPNEAIAIISTNSIFINWLKLRIGYVCIGQFE 92

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BLAST of Clc02G19990 vs. ExPASy Swiss-Prot
Match: Q1XDT3 (Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.3e-09
Identity = 35/92 (38.04%), Postives = 57/92 (61.96%), Query Frame = 0


Query: 107 YYFVVANAKFMLDEEEHFKELLFERLRYYGERNKEQDFWLVIEPKFLDKFPNITKR--LQ 166
           YYF +A+  F+L  +E  +E+  ER+ YY   NK  DFWL+  P FL+K   I+ +  + 
Sbjct: 4   YYFALASQNFLL-VQEPLEEVFRERVNYYQSNNKAIDFWLIPNPSFLEKPEMISFKNLVP 63

Query: 167 RPAVALVSTNSSWITFMKLRLDRVLVESYEAN 197
           + AVA++STN  +I ++KLR+  + +  +E N
Sbjct: 64  KDAVAIISTNPIFINWLKLRIGYICIGQFEDN 94

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BLAST of Clc02G19990 vs. ExPASy TrEMBL
Match: A0A6J1FW50 (uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC111449035 PE=4 SV=1)

HSP 1 Score: 382.5 bits (981), Expect = 1.3e-102
Identity = 204/232 (87.93%), Postives = 210/232 (90.52%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPT  AAVKSLASS+IG HNHCRT  LPLGL SAS SS+ F S
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSAFFSS 60

Query: 78  PPGSSLSSPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFER 137
             GSSLS  F+TAIAAVN      SDSADK+ESNKYYF+VANAKFMLDEEEHFKELLFER
Sbjct: 61  HRGSSLSLRFNTAIAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 138 LRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVE 197
           LR YGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL E
Sbjct: 121 LRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 198 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 181 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 232

[Close]

BLAST of Clc02G19990 vs. ExPASy TrEMBL
Match: A0A5A7SVU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00710 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGT NLVMGSSSAA+AT TH AAVKSL +S IGHHN   T  LPL LPS SI SSCFLS
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 78  PPGSSLSSPFSTAIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRYYGE 137
            P SSLSSPF+TAIAAVNSDSADKQES KYYF+VANAKFMLDEEEHFKELLFERLR YGE
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERLRNYGE 120

Query: 138 RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVESYEANS 197
           RNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+S+WITFMKLRLDRVL ESYEANS
Sbjct: 121 RNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 198 LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           +EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV
Sbjct: 181 IEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

[Close]

BLAST of Clc02G19990 vs. ExPASy TrEMBL
Match: A0A1S3C2E4 (uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 2.9e-102
Identity = 200/226 (88.50%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGT NLVMGSSSAA+AT TH AAVKSL +S IGHHN   T  LPL LPS SI SSCFLS
Sbjct: 1   MLGTANLVMGSSSAAVATSTHFAAVKSLPTSGIGHHNRFPTPSLPLLLPSTSIFSSCFLS 60

Query: 78  PPGSSLSSPFSTAIAAVNSDSADKQESNKYYFVVANAKFMLDEEEHFKELLFERLRYYGE 137
            P SSLSSPF+TAIAAVNSDSADKQES KYYF+VANAKFMLDEEEHFKELLFERLR YGE
Sbjct: 61  SPLSSLSSPFNTAIAAVNSDSADKQESIKYYFLVANAKFMLDEEEHFKELLFERLRNYGE 120

Query: 138 RNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVESYEANS 197
           RNKEQDFWLVIEPKFLDKFPNITKRL+RPAVALVST+S+WITFMKLRLDRVL ESYEANS
Sbjct: 121 RNKEQDFWLVIEPKFLDKFPNITKRLRRPAVALVSTDSTWITFMKLRLDRVLAESYEANS 180

Query: 198 LEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           +EEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV
Sbjct: 181 IEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 226

[Close]

BLAST of Clc02G19990 vs. ExPASy TrEMBL
Match: A0A6J1JCP0 (uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525 PE=4 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 5.0e-102
Identity = 205/233 (87.98%), Postives = 210/233 (90.13%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAMATPT  AAVKSLASS+IG HNHCRT  LPLGL SAS SSS FLS
Sbjct: 1   MLGTVNLVMGSSSAAMATPTQCAAVKSLASSKIGLHNHCRTFSLPLGLASASGSSSFFLS 60

Query: 78  PPGSSLS-SPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFE 137
             GSSLS   F TA+AAVN      SDSADK+ESNKYYF+VANAKFMLDEEEHFKELLFE
Sbjct: 61  HRGSSLSFLRFKTAVAAVNSDQIVSSDSADKEESNKYYFLVANAKFMLDEEEHFKELLFE 120

Query: 138 RLRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLV 197
           RLR YGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL 
Sbjct: 121 RLRNYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLA 180

Query: 198 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPV KAEAKV
Sbjct: 181 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVAKAEAKV 233

[Close]

BLAST of Clc02G19990 vs. ExPASy TrEMBL
Match: A0A6J1D8T3 (uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017973 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 3.3e-101
Identity = 196/232 (84.48%), Postives = 205/232 (88.36%), Query Frame = 0


Query: 18  MLGTVNLVMGSSSAAMATPTHSAAVKSLASSRIGHHNHCRTLPLPLGLPSASISSSCFLS 77
           MLGTVNLVMGSSSAAM TP   AAVKSLAS+R  HH HCRTL LPLG  +AS S+SCFL 
Sbjct: 1   MLGTVNLVMGSSSAAMVTPAQFAAVKSLASARASHHTHCRTLSLPLGFANASGSTSCFLP 60

Query: 78  PPGSSLSSPFSTAIAAVN------SDSADKQESNKYYFVVANAKFMLDEEEHFKELLFER 137
             GSS SSPFSTAIAAVN      SD ADKQE+NKYYF+VANAKFMLDEEEHFKELLFER
Sbjct: 61  SRGSSPSSPFSTAIAAVNSNQLVSSDPADKQEANKYYFLVANAKFMLDEEEHFKELLFER 120

Query: 138 LRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLVE 197
           LRYYGERNKEQDFWLVIEPKFL+KFPNITKRLQRPAVALVSTNS+WITFMKLRLDRVL E
Sbjct: 121 LRYYGERNKEQDFWLVIEPKFLEKFPNITKRLQRPAVALVSTNSTWITFMKLRLDRVLAE 180

Query: 198 SYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEAKV 244
           SYEANS EEA+AS PTN+EFEKPEKWVAPY KYEYGWWE FLPPVTKAEAKV
Sbjct: 181 SYEANSFEEAMASNPTNIEFEKPEKWVAPYPKYEYGWWETFLPPVTKAEAKV 232

[Close]

BLAST of Clc02G19990 vs. TAIR 10
Match: AT5G58250.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: thylakoid, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2488 (InterPro:IPR019616); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 232.6 bits (592), Expect = 3.3e-61
Identity = 119/171 (69.59%), Postives = 137/171 (80.12%), Query Frame = 0


Query: 72  SSCFLSPPGSSLSSPFSTAIAAVNSDSA-DKQESNKYYFVVANAKFMLDEEEHFKELLFE 131
           SS  LS P S  SS F TA  ++   S+ +K ES KY+F+VANAKFMLDEEEHF+E LFE
Sbjct: 40  SSPSLSLPSSHFSSSFKTAATSIEQQSSVNKGESTKYHFLVANAKFMLDEEEHFQEQLFE 99

Query: 132 RLRYYGERNKEQDFWLVIEPKFLDKFPNITKRLQRPAVALVSTNSSWITFMKLRLDRVLV 191
           RLRY+GER   QDFWLVIEPKFLD FP IT+RL+RPAVALVSTN +WITFMKLRLDRVL 
Sbjct: 100 RLRYFGERELVQDFWLVIEPKFLDNFPKITQRLRRPAVALVSTNGTWITFMKLRLDRVLY 159

Query: 192 ESYEANSLEEALASTPTNLEFEKPEKWVAPYSKYEYGWWEAFLPPVTKAEA 242
           +S+EA SL+EALAS PT LEF+KP+ WVAPY KYE GWW+ FLP VT+  A
Sbjct: 160 DSFEATSLDEALASNPTTLEFDKPKNWVAPYPKYEPGWWDTFLPKVTQESA 210

The following BLAST results are available for this feature:

BLAST of Clc02G19990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038900405.1	1.2e-113	94.69	uncharacterized protein LOC120087636 [Benincasa hispida]	[more]
XP_022944632.1	2.7e-102	87.93	uncharacterized protein LOC111449035 [Cucurbita moschata] >XP_023512536.1 unchar...	[more]
XP_008456263.1	6.1e-102	88.50	PREDICTED: uncharacterized protein LOC103496259 [Cucumis melo] >KAA0033541.1 unc...	[more]
XP_022986936.1	1.0e-101	87.98	uncharacterized protein LOC111484525 [Cucurbita maxima]	[more]
KAG7010462.1	2.3e-101	87.07	putative protein ycf54 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Clc02G19990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P72777	1.3e-14	48.04	Ycf54-like protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN...	[more]
P51204	2.3e-11	41.94	Uncharacterized protein ycf54 OS=Porphyra purpurea OX=2787 GN=ycf54 PE=3 SV=1	[more]
Q1XDT3	1.3e-09	38.04	Uncharacterized protein ycf54 OS=Pyropia yezoensis OX=2788 GN=ycf54 PE=3 SV=1	[more]

BLAST of Clc02G19990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FW50	1.3e-102	87.93	uncharacterized protein LOC111449035 OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A5A7SVU2	2.9e-102	88.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C2E4	2.9e-102	88.50	uncharacterized protein LOC103496259 OS=Cucumis melo OX=3656 GN=LOC103496259 PE=...	[more]
A0A6J1JCP0	5.0e-102	87.98	uncharacterized protein LOC111484525 OS=Cucurbita maxima OX=3661 GN=LOC111484525...	[more]
A0A6J1D8T3	3.3e-101	84.48	uncharacterized protein LOC111017973 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Clc02G19990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58250.1	3.3e-61	69.59	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019616	Ycf54 protein	PFAM	PF10674	Ycf54	coord: 106..195 e-value: 3.7E-35 score: 120.1
IPR019616	Ycf54 protein	PANTHER	PTHR35319	FAMILY NOT NAMED	coord: 26..239
IPR038409	Ycf54-like superfamily	GENE3D	3.30.70.1860	Uncharacterised protein family Ycf54	coord: 104..216 e-value: 7.0E-39 score: 134.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19990.2	Clc02G19990.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
molecular_function	GO:0048529	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity