Clc02G19860 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19860
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin-protein ligase RGLG4
Location	ClcChr02: 32459548 .. 32466646 (-)
RNA-Seq Expression	Clc02G19860
Synteny	Clc02G19860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAGAGGAGGATTTGGTGGCAAATGTGAGGATCAAACATGTAGTCGCATCGATGGTGTTAAGGCAAAATCCCAATGGTTTGAAAGACGGTTTGAGAGAGAAGTTGGAGATTCTCCATATTTCCGTAGCCAAAACCGCAAAGGGGAGAAGATGGAAGGTGCATGTCTAACAACAAAGGAGGAGAATATTAGTATTTTTTGTTGTTAGTTTCAAATTAATTAATTAATCAACATTTTGATGATAACAAGTTTGAATTAATGAATTAATTTATTATTTTTAAGTATCTGAAATAACGAATCTAATGCATTTTGAATCACCCAAACGAAAAAGATATAGTCAAAACAAACTTAACAAAAAAAAATCTCGATGATGTGGCTGATTCTTTTCATCAGAGTGGACCAACTAAAACGTGCCACTCGGTGGGTTTTTAATTTTTAGATTTTTTTAAAAAAAGAAAATGAATTAAATATTATTATATATGTTTGTGTCTAACAACTAGTTGAGTTTGAATCTCCATCATTCAATTTTCTTTCACCAACATTCAATAGTCCAAATTAATTATATTTTTCAGCAACTTTCCTCTCTCTTTAAACACATATTTTCTCTAAATTTTTATAACAATTTTTTCGATAGTTTCCATTGTTGCTCTCTCAAAACTTCAATTTTCTTCTTTTCATCTTATTCTATTGTATTGTGAATATTGATTTATTGGGTGCTCTAAATTGTAAATCTACTATTTAAGAGAGTTTTTTCTCATATTGTTCTTTATTTTCAAACCTATTGTAAGGGTTGCTTTTAATCCAAAAAAATAGTGGCTATAACGGTTTGATCCTCGACCGTGGAAAATATTGAGTTTGTTCTTGCACCCGGAAAAAGAACATTGTGGCAATTCCACTCAAGTCGTAAAAAGAGTCAAATTCGTAGTGATATACCCAAGACGAGCTTGGGATGTGGATGTAGGCTAGTTGTGCTGAGCCGTGATGTGTCATTTTCTCTATCCCTATTTTATTTAATTTTGCAATTAATTTGTTATTACATTTTATTGCTTGGAATTTATTGCAATTTTTGTTATTGATAATTAATTGCTCATATTGGTTTATTTTAATTGGTAGTTATTAACTTTATATATTTATTACCAATCTTGTTATCAATATCAACATAGTGCTTAAAAATATTATTTATTGATTTATGGATTATTTTGAATTAATTCTATTTGCATACAATTATTGTTTAAATTACTTATTTTCAAAGAGTTTATTAATTTGCCTAATTGGGCACACATTATAAAAATAGTTTAAATTAGTCCTAATAAATCCTATTCACCCCACATTATACCGATCCTACAAAAAAAGATGGAAGGTTTATGGGGAATTGAAGATTTTGAAAAGCCTTTTAATTTCCTAATTTAAAACATTCATAATTAATTGTAGGTTAGGGATCAAAAGGTAATTGAACCATAATTTTTGCATAACTAACTAACCCACTTGGACATTTGTGAAAATAATATAAAAGGTTGGTATAATTGAAATATAAGGTATTTATTAGAGTTTTATGCATTGTGATCCCCTTAAAAATTGTTCCAATAGGTTACTCAATATTTAATCATGTCCTATAAGTTCATAACAGGTATGTATTTTAAAATTTTCAATTGATGTAACATATACAATTTTAAATTTTATATTTAATTGGATTATGAACTTTCATTGTTTGTGTCTAGAATGTTTGCAAATTTTAAAAAAAAAAATGTTGAATACATCAACAACCTATACACAAAATTGAAATTAAAGCACCTAATTTAAGTAAATTTGAAAGTATACAAATCTATTAAAGCCTCTTTGGAGTTCAATAATCAAACATAGAACTGGATATTCATGAACTCACTAAACATTTTTCAAAGTTTATAGATATAAATAGACGTCGAAATTGAAATAGTATGTATTTGTTTTTGTTAAATTATAAATTCAATTAATTTATTAGACACGAATTTGAATTTTATGGTCAAATAAAATCTAAACTAAATAGACTCAAACTTAAAAATCTAGCCACTAATTTTATTATTTCAAATACTTTGATTTTTTTTTCTAATCTTTATATTTAAATCTCCTTTTATTTATTAATTTCAAGCTAGTATTTATTTATTTTAAATATTTTTTTAAGTCCAATAATTACACGAATAAGATTAAATCTTTAATTTCTAGAATAAATATGAGTTAAACTATCTCGTTTAAATTTTTATTCTCAAAGGTGATGTTACATCATAATTTGAGCTTTATTTTTCCGTGTCTTTAGAGTTTCCGTTTCTTTCCCACATCAAAAACTTTTGCATTTAATTATAGTTACATAAATCTTCACGTCTGAAGAAATTTCCACTCAATTTTTTTCACCTCTAGAATCCAATTCCTTTCTCTCTCACCTCTAGAATCCAATTCCTTTCTTCGAACTACGCTTCTGCTTTTTAAACCCAACCCAAGTGAGCTCTAAAATATGCCCTTAAACCGTAATACAATAATATTTATTTTTATAACCTATAGTTTTTATTTTCGCCCTTCGAACATCTCTTACTTTGAGATTTGTACATGTAATTTTCGTCCTCTAATTTCAGTGGTTGAACGATATGGGAGGTTGGGTCAGCTCGTTTGATAAAAGGTGGCAAAAGGGCTGCTGTCGGGAAAGAACTGTCGCTTAAGAAGACTGACAACAGTAGCGGCGGTGGCGGTGGTGGCGGCAACAGCCGTGGAAAGTCCTTGAGGCGGTTGGAGAAAAAGGTTTATTTTAAAAAGAAATATGGTTTCATCACAGATAACTTCTCCTCTATTGATTATGTTTCTCTCTCTTCTCTAAAAGTTACATTTATTTTTCAAATAAAAATAGAGATTTAATTTAAGTTCATTTGTATTTCTTAACCTTCAAATTCAACTTTTTTTTTTATTTTATTTTTTAATTCAATTGCTTCTAGTTCTAAATATATATTTTTTTCTTTCCAAATTAATAAATAAATAAATAACTAATGTTCGACGAGATTTTCGAATAAATTTAATTCATGAAACTTGAAGTTCGTATTTGTATTAATTTCAGTGTTGTGAGTACAATCTCTAATATTTGATCATTTGATTCTTTCTCTAAACAAAATAAACTTTAATCCTTAGGTTTGTTGATTTTCTTGGACGATGATCTTCTTGGGTGATCAGCTTGTAGGCTTGTTGATCTTCTTGGGTGATCGACTTTGGGCTTGATGATCTTCTTTGGTGATCGGCTTTAGGCTTATTGATCTTCTTGGATGATCGGCCTTTAGGCTTGTTGATCAACTTGATCGACTTCAGAGAAAGTGTTCTGATCTTCTGAATGTACTTTAAGCTTTTGTCTTAGTTCAAGTTTTGCATTATTCAGATCTTTTGAGCTAAGGGGTTGTTTTGCATTATTCAGATCTTTTGAGCTAAGGGGTTGTTTTGCATTATTTAGATCTTTTGAGCTAAGGGGTTGTGAGCTAAGGGGTTGTGAGCTAAGGGGTTGTTTTGCATTATTCAGATCTTTTGAGCTAAGGGGTTGTGTTATTAGGATATTTAGAGCTTCAGTCTTCAAAATTTGATTAGAACTTCAAGGTCTTGGAATCTTCAGGATTCCGTCTTCAGAACTTCAGAGCATTAGCTCTCCATTGTTAATGCTTCCCCCTCTTTTCAAAACCTCTATTTATAGAGTTTCTATGGGACTTCATGGGTTTGGGCCCAAAATTTGGGACTGGGCTTGGGCCTAATATCTTCTTTGGCCCAAAAATATTCACAATGGACTTGAATTGGGTTGGGCTTTTGACCCGAGCGACTTTAATTACTCGGCCCAATCTGATTTATAAATTCCACAATGCATTTGGACTTTGTTATGATGACGTGGCAAAATTTGGTTGGCCGAAATTTCTCATTCAACGACTACTTAGGTATTTTTTGGGTTGTGCTTTATGCAATCTAGGGTAAAAAAACTGACACACAACAATTTATTATTATTTTTAACAACTTTTTTTTTCTTAAAAAAGAAGGGTATGAAGATTAAGTGCACCTAAGTTGCACCTAATCATTGCTCACAAATAAATATCAACTTTTAACCATTGTTAAAAAGAAAATGAAGATACGATGTTACCACTAACTAGGAGTGTGCAACAGTCGATCGGAATCAGTTTTTTGGCTAAATTGTAAAACTAACTATGGTCGGTTTACTAAATATTCAAACCAATCTCGCTCATCAAGAAGTGAAAACCGGCCTTCGATTGGTTAGACGGTCGGTTTAGGTCAGTTTTCTTCTTCTTCTTCTTCTTTTTTTTTTTAAATGTCGATTTGAAATGACACCAACTGAGTCTCTCCTCTTTTCCGACCGAACGCCTTCAGTTCGGTCAGCTCGATTTTGCGATCTATCACACTCACCCCTATCACTTACTAGTGAACAAGAAAAAAAAATAGTTGGTTGTTAAGGTTCTTTTCAAATATAGCAAAATGAATCAAAATATTTACAAATATAACAAAATTTTACTACGACGGACTGCGATAAACGGTATATTTTACTATTAGTTGTAAATATTTTCAGCAGCTTTACTAGTTGTTACTATATTTAATTAATTTTTCTTCATGTGTTAAGTGTCACCTCATTATTAAAGAAAAAAGAGAGGAGTGTAATTATCATTGGCTGTTGGTGGACCGGAAGAGTTAATAATGTGCATATGAAATTGAGATAGGTGGCTACGAGGAAATTGCACGTTTGTGCAAAAAAGGGGAAATACGTGGTTCGGTGCAACGATAATTAATCTATATAAAACATAGAAAAACTTATTTGGTTTGTAAGTTTAAAAATGTTGCAATATTTTACCTTGAGTTCTGTTTCAATTTGGTCTATAAGTTTTAATTATAAAATTAACATTTAAATATAATTTTAGGAATAATGGAAAATAAAAAAATTTAATCAATTATAATCTTTTGAAAATAAATAGTAGCCATTAATATAAAAGACGAAAAGTAAATATTTAGTGAAAAATCAAGGTTAGAAGTGTAAACATTGAAACTTAGAAACCAAATTGAAACAAAACTCAAATTTCAAGAGCAAAATTGTATCATATTGAAACGTAGAAGAGTTAATTGAAATCAAACTAAAAAATTGAAGGAATAAAAATATAATATTTTAAAACTTAAACCAAATTAGACCCAATACCATGGAACAAAAGAGTACTTATTTCAAATAAATAATTAAAGCTGTCCTCACTAACACTGGTTTAACAATTTTTTTAATAACATATAATAAATAAGAATTAAAAGCCTCTACATCAATAAACTTTCTATATATATATATATTTTTTTTTTTTTTAAAAAAAATCTATTGTTATTCTTTTTCACCTTCTAAACACAAGATTCTAAGTAGTTTTTCGTTACAAACAAGATTAAATAAAAAGAAAAAAGATCAAAACCATTTTTCAGATTTCAAATCATTAAAACCAATGGAACTTTCAAACGGAAGGTAAAAGACTTTATTTGTGCCAAGGTTACTCGAAGCTCCGATATTGGCGATGGTGCATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGGTAGCCACAAAAAAAAAAAAAAAAAAAAAAAAGCAAAAAAGCAAAAATGTAAAGAAAAAAAGAATAACCTTAGATTTGAATCATCTAGTTTCATTTCAGATTTTGAGATATTGTCTTATTCTTTCCATCCAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATAAAGAAGTTCGACGACAAGATCCCAGCTCGGGATTTCGATAATTTTCAGGTTTCATAGCAATCCAAATACGACTTGGATCTGTTCAGTCAAATTCAATTGCAAACATCAGCAGAATCACTTTTCTGACCTTGCATTTTTGCTAATAACTACGTGCAATTTGTTAACTTCACTGAAATAATGTCGAAAAGCCACGGCACGCCTGAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTTATGGAGGTTCCTTTCCAGTACAAAGCAGTAACAGAAATGGGTCTTATAGGGTAAAGCTCTCAATAAATTCAACTGTTTCTCATGGGGTTTGGCTCTGGCTGGAAATGGCTTATAACTAACTACTAAACTCTGCTTCTTTGCTCTGCTTCTTTTGATGTGGAGCCAAGACATGTGACAGGAAAAACAAAACGCATTGTGCCACGACCCCCTCCAACACGTTATACTCGTCCTACACGGCTCACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATCTGATGAACAGAATCAGGTATGTTCTCGTAGTGTTTTCTCAAAGCTCAAGGCATAATAAAATGCAATGGTCTTCTGGAGCTTAAGCGCAATGTGCGGAAAAAAAAAGCACTATATATAAAAGTACTATATGAAGAAGATAAAACATAGTTGAAGTGGAAATATGAAAAAGAAGACCCTTAAACAAAAGAAATTTTGCATTTAGGCTTAATAAATTTGATTTTTTTAGTTAATAAAGAAGAAAAACCCCTGATTATTACTATTTTAAAAAAATTATAAAGAAGACCCTAGACCCGGGCCTTTGAGCCCATGTGTGCACCCGAGAGGGCTTTTTAAAACAAACTGTTCTAGTATGGAACTTGTCACTTCCTTTGCTTGATTATTGCTCTTTATAATTCTGGGGTTTCAATATTGGTTCCAAATTTGGGATGGATCAAGTATAGAAACAATAACATTATTTCCAACTCAAATGCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGTTGAGAGATTGAACTACTTAATATCTAATAAACAATTCTTCATTCACTACCTCAAAGAATTCATCTGCATGTACATTATGAGATAATATGCATAAATAAACAAGAAAATAAGCACATTTTATACCATTCCTACTTGTTGCAACCTCTTAATACACACACATATACTAACATTCAAACATTGCAGACCTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCAAATAAGGCTATATACCGGGTGA

mRNA sequence

ATGGGCAGAGGAGGATTTGGTGGCAAATGTGAGGATCAAACATGTAGTCGCATCGATGGTGTTAAGGCAAAATCCCAATGGTTTGAAAGACGGTTTGAGAGAGAAGTTGGGTCAGCTCGTTTGATAAAAGGTGGCAAAAGGGCTGCTGTCGGGAAAGAACTGTCGCTTAAGAAGACTGACAACAGTAGCGGCGGTGGCGGTGGTGGCGGCAACAGCCGTGGAAAGTCCTTGAGGCGGTTGGAGAAAAAGGTTTATTTTAAAAAGAAATATGGTTTCATCACAGATAACTTCTCCTCTATTGATTATGTTTCTCTCTCTTCTCTAAAAGTAAAAGACTTTATTTGTGCCAAGGTTACTCGAAGCTCCGATATTGGCGATGGTGCATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATAAAGAAGTTCGACGACAAGATCCCAGCTCGGGATTTCGATAATTTTCAGACCTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCAAATAAGGCTATATACCGGGTGA

Coding sequence (CDS)

ATGGGCAGAGGAGGATTTGGTGGCAAATGTGAGGATCAAACATGTAGTCGCATCGATGGTGTTAAGGCAAAATCCCAATGGTTTGAAAGACGGTTTGAGAGAGAAGTTGGGTCAGCTCGTTTGATAAAAGGTGGCAAAAGGGCTGCTGTCGGGAAAGAACTGTCGCTTAAGAAGACTGACAACAGTAGCGGCGGTGGCGGTGGTGGCGGCAACAGCCGTGGAAAGTCCTTGAGGCGGTTGGAGAAAAAGGTTTATTTTAAAAAGAAATATGGTTTCATCACAGATAACTTCTCCTCTATTGATTATGTTTCTCTCTCTTCTCTAAAAGTAAAAGACTTTATTTGTGCCAAGGTTACTCGAAGCTCCGATATTGGCGATGGTGCATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGTGCATATCCTCTTTCGATTATTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATAAAGAAGTTCGACGACAAGATCCCAGCTCGGGATTTCGATAATTTTCAGACCTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCAAATAAGGCTATATACCGGGTGA

Protein sequence

MGRGGFGGKCEDQTCSRIDGVKAKSQWFERRFEREVGSARLIKGGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEKKVYFKKKYGFITDNFSSIDYVSLSSLKVKDFICAKVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFDNFQTCRECGSRLSNCHICRQPIRNQIRLYTG

Homology

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BLAST of Clc02G19860 vs. NCBI nr
Match: XP_008456279.1 (PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Cucumis melo])

HSP 1 Score: 154.8 bits (390), Expect = 7.9e-34
Identity = 137/421 (32.54%), Postives = 151/421 (35.87%), Query Frame = 0


Query: 27  WFERRFEREVGSARL----IKGGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEK 86
           W      R   SA+     +KGGK AAVGKE S++K+D     GGGGG+SRGKSL R  K
Sbjct: 5   WLSNMGNRVSSSAKRSDGGVKGGKTAAVGKEASVQKSD-----GGGGGSSRGKSLWRPGK 64

Query: 87  KVYFKKKYGFITDNFSSIDYVSLSSLKVK-----------DFI----------------- 146
           KV F KKYGFI DNFSSID V+ S+L+ +           DF                  
Sbjct: 65  KVDFPKKYGFIADNFSSIDQVT-SALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLH 124

Query: 147 ------------------------------------------------------------ 206
                                                                       
Sbjct: 125 ALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFSFHNDNSPCHGFEEV 184

Query: 207 --CAK------------------------------------------VTRSSDIGDGALS 208
             C K                                          VTRSS +GDG LS
Sbjct: 185 LDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSVGDGELS 244

[Close]

BLAST of Clc02G19860 vs. NCBI nr
Match: XP_038901341.1 (E3 ubiquitin-protein ligase RGLG4 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 2.3e-33
Identity = 134/401 (33.42%), Postives = 143/401 (35.66%), Query Frame = 0


Query: 43  KGGKRAAVGKE-LSLKKTDNSSGGGGGGGNSRGKSLRRLEKKVYFKKKYGFITDNFSSID 102
           KGGK AAV KE  SLKKTD+   G GGGG+SRGKSL R EKKVYF KKYGFI DNFSSID
Sbjct: 17  KGGKTAAVSKEPPSLKKTDS---GSGGGGSSRGKSLCRPEKKVYFPKKYGFIADNFSSID 76

Query: 103 YVSLSSLKV----------KDFI------------------------------------- 162
            V+ +  K            DF                                      
Sbjct: 77  QVTAALRKEGLESSNLIVGMDFTKSNEWTGKVSFNNRSLHAVSDSPNPYENALSIIGKTL 136

Query: 163 ------------------------------------------CAK--------------- 208
                                                     C K               
Sbjct: 137 APFDDDSLIPCFGFGDATTHDQTVFGFHSDNTPCHGFEEVIDCYKNIIPNVQLSGPTSYG 196

[Close]

BLAST of Clc02G19860 vs. NCBI nr
Match: XP_004139915.2 (E3 ubiquitin-protein ligase RGLG4 [Cucumis sativus] >KGN46786.1 hypothetical protein Csa_021092 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 2.4e-30
Identity = 132/421 (31.35%), Postives = 145/421 (34.44%), Query Frame = 0


Query: 27  WFERRFEREVGSARL----IKGGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEK 86
           W      R   SA+     +K GK   VGKE S+KK+D+     GGGG+SRGKSL R E 
Sbjct: 5   WLSNMGSRVSSSAKRSNGGVKSGKTGGVGKEASVKKSDS-----GGGGSSRGKSLWRPET 64

Query: 87  KVYFKKKYGFITDNFSSIDYVSLSSLKVK-----------DFI----------------- 146
           KV F KKYGFI DNFSS+D V+ S+L+ +           DF                  
Sbjct: 65  KVNFPKKYGFIADNFSSVDQVT-SALRKEGLESSNLIVGIDFTKSNEWTGAVSFNKRSLH 124

Query: 147 ------------------------------------------------------------ 206
                                                                       
Sbjct: 125 ALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQLVFSFHNDNSPCHGFEEV 184

Query: 207 --CAK------------------------------------------VTRSSDIGDGALS 208
             C K                                          VTRSS   DG LS
Sbjct: 185 LDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSLFRDGELS 244

[Close]

BLAST of Clc02G19860 vs. NCBI nr
Match: XP_034211852.1 (E3 ubiquitin-protein ligase RGLG4 isoform X3 [Prunus dulcis])

HSP 1 Score: 137.9 bits (346), Expect = 1.0e-28
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  D  LS QEEKTI++I DAS YPLSI+LVGVGDGPW+D++KFDDK+PAR+FD
Sbjct: 231 QVTRSVDTSDNELSPQEEKTIRSIADASFYPLSIVLVGVGDGPWEDMRKFDDKLPAREFD 290

Query: 177 NFQ-------------------TCRECGSRLSNCHICRQPIRNQIRLYTG 208
           NFQ                   +CR+CG RLSNC ICRQPIR+++R++TG
Sbjct: 291 NFQACPVCLTNNKDLAFGCGHMSCRDCGPRLSNCPICRQPIRSRLRVFTG 340

[Close]

BLAST of Clc02G19860 vs. NCBI nr
Match: XP_023533277.1 (E3 ubiquitin-protein ligase RGLG4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 2.9e-28
Identity = 83/195 (42.56%), Postives = 88/195 (45.13%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTR S +GDG LSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDD+KKFDDKIPARDFD
Sbjct: 265 QVTRGSSVGDGELSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFD 324

Query: 177 NFQ--------------------------------------------------------- 208
           NFQ                                                         
Sbjct: 325 NFQFVNFTEIMSRNIATPEKEAAFALAALMEVPLQYKAVKEMNLLGHVTGKAKLVRPRPP 384

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BLAST of Clc02G19860 vs. ExPASy Swiss-Prot
Match: Q9SAL0 (E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.7e-19
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTR +D+ +G LS QE+ TI AIV+AS+Y LSI+LVGVGDGPW+D++KFDDKIP R+FD
Sbjct: 211 QVTRGTDMAEGELSQQEKTTIDAIVNASSYALSIVLVGVGDGPWEDMRKFDDKIPKREFD 270

Query: 177 NFQ 180
           NFQ
Sbjct: 271 NFQ 273

HSP 2 Score: 43.1 bits (100), Expect = 4.4e-03
Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 180 TCRECGSRLSNCHICRQPIRNQIRLYT 207
           TC +CGS++SNC ICR  I N+++LYT
Sbjct: 375 TCGDCGSKISNCPICRVRITNRLKLYT 401

[Close]

BLAST of Clc02G19860 vs. ExPASy Swiss-Prot
Match: Q8LB88 (E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G  S QE++TI AIV AS YPLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 225 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 284

Query: 177 NFQ 180
           NFQ
Sbjct: 285 NFQ 287

[Close]

BLAST of Clc02G19860 vs. ExPASy Swiss-Prot
Match: Q9LY87 (E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G LS QE+KT+ AIV AS  PLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 254 QVTRSVDTENGQLSPQEQKTVDAIVQASKLPLSIVLVGVGDGPWDMMREFDDNIPARAFD 313

Query: 177 NFQ 180
           NFQ
Sbjct: 314 NFQ 316

[Close]

BLAST of Clc02G19860 vs. ExPASy Swiss-Prot
Match: Q9SS90 (E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 5.3e-17
Identity = 43/63 (68.25%), Postives = 50/63 (79.37%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D   G LS QE+KT+ AIV AS  PLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 288 QVTRSVDTEHGRLSPQEQKTVDAIVKASTLPLSIVLVGVGDGPWDMMQEFDDNIPARAFD 347

Query: 177 NFQ 180
           NFQ
Sbjct: 348 NFQ 350

[Close]

BLAST of Clc02G19860 vs. ExPASy Swiss-Prot
Match: Q8RX26 (E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 9.1e-17
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTR+ D+  G LS QEE T+ +I+ AS YPLSI+LVGVGDGPWD +K+FDD IP R+FD
Sbjct: 169 QVTRNPDVPLGRLSPQEEATMNSIMAASHYPLSIVLVGVGDGPWDTMKQFDDNIPHREFD 228

Query: 177 NFQ 180
           NFQ
Sbjct: 229 NFQ 231

HSP 2 Score: 43.1 bits (100), Expect = 4.4e-03
Identity = 16/27 (59.26%), Postives = 21/27 (77.78%), Query Frame = 0


Query: 180 TCRECGSRLSNCHICRQPIRNQIRLYT 207
           TC+ECG  ++ C +CRQPI  +IRLYT
Sbjct: 341 TCKECGVVITTCPLCRQPITTRIRLYT 367

[Close]

BLAST of Clc02G19860 vs. ExPASy TrEMBL
Match: A0A1S3C2F8 (E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo OX=3656 GN=LOC103496272 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 3.8e-34
Identity = 137/421 (32.54%), Postives = 151/421 (35.87%), Query Frame = 0


Query: 27  WFERRFEREVGSARL----IKGGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEK 86
           W      R   SA+     +KGGK AAVGKE S++K+D     GGGGG+SRGKSL R  K
Sbjct: 5   WLSNMGNRVSSSAKRSDGGVKGGKTAAVGKEASVQKSD-----GGGGGSSRGKSLWRPGK 64

Query: 87  KVYFKKKYGFITDNFSSIDYVSLSSLKVK-----------DFI----------------- 146
           KV F KKYGFI DNFSSID V+ S+L+ +           DF                  
Sbjct: 65  KVDFPKKYGFIADNFSSIDQVT-SALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLH 124

Query: 147 ------------------------------------------------------------ 206
                                                                       
Sbjct: 125 ALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFSFHNDNSPCHGFEEV 184

Query: 207 --CAK------------------------------------------VTRSSDIGDGALS 208
             C K                                          VTRSS +GDG LS
Sbjct: 185 LDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSSVGDGELS 244

[Close]

BLAST of Clc02G19860 vs. ExPASy TrEMBL
Match: A0A0A0KG96 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G135420 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.2e-30
Identity = 132/421 (31.35%), Postives = 145/421 (34.44%), Query Frame = 0


Query: 27  WFERRFEREVGSARL----IKGGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEK 86
           W      R   SA+     +K GK   VGKE S+KK+D+     GGGG+SRGKSL R E 
Sbjct: 5   WLSNMGSRVSSSAKRSNGGVKSGKTGGVGKEASVKKSDS-----GGGGSSRGKSLWRPET 64

Query: 87  KVYFKKKYGFITDNFSSIDYVSLSSLKVK-----------DFI----------------- 146
           KV F KKYGFI DNFSS+D V+ S+L+ +           DF                  
Sbjct: 65  KVNFPKKYGFIADNFSSVDQVT-SALRKEGLESSNLIVGIDFTKSNEWTGAVSFNKRSLH 124

Query: 147 ------------------------------------------------------------ 206
                                                                       
Sbjct: 125 ALSDSPNPYQKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQLVFSFHNDNSPCHGFEEV 184

Query: 207 --CAK------------------------------------------VTRSSDIGDGALS 208
             C K                                          VTRSS   DG LS
Sbjct: 185 LDCYKNIIPNAQLSGPTSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSLFRDGELS 244

[Close]

BLAST of Clc02G19860 vs. ExPASy TrEMBL
Match: A0A6J1KZS5 (E3 ubiquitin-protein ligase RGLG4 OS=Cucurbita maxima OX=3661 GN=LOC111499741 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-27
Identity = 82/195 (42.05%), Postives = 87/195 (44.62%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTR S +GDG LSVQEEKTIKAIVDASAY LSIILVGVGDGPWDD+KKFDDKIPARDFD
Sbjct: 268 QVTRGSSVGDGELSVQEEKTIKAIVDASAYALSIILVGVGDGPWDDMKKFDDKIPARDFD 327

Query: 177 NFQ--------------------------------------------------------- 208
           NFQ                                                         
Sbjct: 328 NFQFVNFTEIMSRNVATPEKEAAFALAALMEVPLQYKAVKEMDLLGHVTGKAKLVHPRSP 387

[Close]

BLAST of Clc02G19860 vs. ExPASy TrEMBL
Match: A0A6J1KZS5 (E3 ubiquitin-protein ligase RGLG4 OS=Cucurbita maxima OX=3661 GN=LOC111499741 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-04
Identity = 46/141 (32.62%), Postives = 63/141 (44.68%), Query Frame = 0


Query: 44  GGKRAAVGKELSLKKTDNSSGGGGGGGNSRGKSLRRLEKKVYFKKKYGFITDNFSSIDYV 103
           GG++   GK  +     N   GGGGG   RGK  R  EKK  F++KYGFI DNFSSID V
Sbjct: 69  GGEKP--GKMTTEPSVKNMGSGGGGG---RGKGSRLSEKKASFRQKYGFIADNFSSIDQV 128

Query: 104 S----LSSLKVKDFICAKVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGP 163
           +       L+  + I       S+   G +S             + Y  ++ ++G    P
Sbjct: 129 TEALRKEGLESSNLIVGIDFTKSNEWTGKVSFNNRSLHSVSDSPNPYEKALSIIGRTLAP 188

Query: 164 WDDIKKFDDKIPARDFDNFQT 181
           +DD    D  IP   F +  T
Sbjct: 189 FDD----DGLIPCFGFGDATT 200

HSP 2 Score: 131.7 bits (330), Expect = 3.5e-27
Identity = 131/441 (29.71%), Postives = 145/441 (32.88%), Query Frame = 0


Query: 2   GRGGFGGKCEDQTCSRIDGVKAKSQWFERRFEREVGSARLIKGGKRAAVGKELSLKKTDN 61
           GRGG GG  +    +    VK+          R +G      G K   +  + S+K    
Sbjct: 38  GRGGGGGGEKPAKTAAEPSVKS-------TVRRSIGGG----GEKPGKMAAQPSVKNM-G 97

Query: 62  SSGGGGGGGNSRGKSLRRLEKKVYFKKKYGFITDNFSSIDYV------------------ 121
             GGGGGGG  RGK  R  EKK  F++KYGFI DNFSSID V                  
Sbjct: 98  GGGGGGGGGRGRGKGSRLSEKKASFRQKYGFIADNFSSIDQVTEALRKEGLESSNLIVGI 157

Query: 122 -----------------SLSSL--------KVKDFI------------------------ 181
                            SL S+        K    I                        
Sbjct: 158 DFTKSNEWTGKVSFNNRSLHSVSDSPNPYEKALSIIGRTLAPFDDDGLIPCFGFGDATTH 217

Query: 182 ----------------------CAK----------------------------------- 208
                                 C K                                   
Sbjct: 218 DQEVFSFHNDNSPCHGFEEVLDCYKRIIPNVQLSGPTSYASVVEAAMNIVEKSNGQFHIL 277

[Close]

BLAST of Clc02G19860 vs. ExPASy TrEMBL
Match: A0A5A7UIE4 (E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00260 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 6.1e-24
Identity = 57/63 (90.48%), Postives = 61/63 (96.83%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRSS +GDG LSVQEE+TIKAIVDASAYPLSIILVGVGDGPWDD+KKFDDKIPARDFD
Sbjct: 162 QVTRSSSVGDGELSVQEERTIKAIVDASAYPLSIILVGVGDGPWDDMKKFDDKIPARDFD 221

Query: 177 NFQ 180
           NFQ
Sbjct: 222 NFQ 224

[Close]

BLAST of Clc02G19860 vs. TAIR 10
Match: AT1G79380.1 (Ca(2)-dependent phospholipid-binding protein (Copine) family )

HSP 1 Score: 95.9 bits (237), Expect = 4.1e-20
Identity = 43/63 (68.25%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTR +D+ +G LS QE+ TI AIV+AS+Y LSI+LVGVGDGPW+D++KFDDKIP R+FD
Sbjct: 211 QVTRGTDMAEGELSQQEKTTIDAIVNASSYALSIVLVGVGDGPWEDMRKFDDKIPKREFD 270

Query: 177 NFQ 180
           NFQ
Sbjct: 271 NFQ 273

HSP 2 Score: 43.1 bits (100), Expect = 3.1e-04
Identity = 16/27 (59.26%), Postives = 22/27 (81.48%), Query Frame = 0


Query: 180 TCRECGSRLSNCHICRQPIRNQIRLYT 207
           TC +CGS++SNC ICR  I N+++LYT
Sbjct: 375 TCGDCGSKISNCPICRVRITNRLKLYT 401

[Close]

BLAST of Clc02G19860 vs. TAIR 10
Match: AT1G67800.1 (Copine (Calcium-dependent phospholipid-binding protein) family )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G  S QE++TI AIV AS YPLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 225 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 284

Query: 177 NFQ 180
           NFQ
Sbjct: 285 NFQ 287

[Close]

BLAST of Clc02G19860 vs. TAIR 10
Match: AT1G67800.2 (Copine (Calcium-dependent phospholipid-binding protein) family )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G  S QE++TI AIV AS YPLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 245 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 304

Query: 177 NFQ 180
           NFQ
Sbjct: 305 NFQ 307

[Close]

BLAST of Clc02G19860 vs. TAIR 10
Match: AT1G67800.3 (Copine (Calcium-dependent phospholipid-binding protein) family )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G  S QE++TI AIV AS YPLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 225 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 284

Query: 177 NFQ 180
           NFQ
Sbjct: 285 NFQ 287

[Close]

BLAST of Clc02G19860 vs. TAIR 10
Match: AT1G67800.4 (Copine (Calcium-dependent phospholipid-binding protein) family )

HSP 1 Score: 91.7 bits (226), Expect = 7.6e-19
Identity = 43/63 (68.25%), Postives = 51/63 (80.95%), Query Frame = 0


Query: 117 KVTRSSDIGDGALSVQEEKTIKAIVDASAYPLSIILVGVGDGPWDDIKKFDDKIPARDFD 176
           +VTRS D  +G  S QE++TI AIV AS YPLSI+LVGVGDGPWD +++FDD IPAR FD
Sbjct: 225 QVTRSVDTDNGGFSPQEQQTIDAIVRASEYPLSIVLVGVGDGPWDTMRQFDDNIPARAFD 284

Query: 177 NFQ 180
           NFQ
Sbjct: 285 NFQ 287

The following BLAST results are available for this feature:

BLAST of Clc02G19860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456279.1	7.9e-34	32.54	PREDICTED: E3 ubiquitin-protein ligase RGLG2 [Cucumis melo]	[more]
XP_038901341.1	2.3e-33	33.42	E3 ubiquitin-protein ligase RGLG4 [Benincasa hispida]	[more]
XP_004139915.2	2.4e-30	31.35	E3 ubiquitin-protein ligase RGLG4 [Cucumis sativus] >KGN46786.1 hypothetical pro...	[more]
XP_034211852.1	1.0e-28	59.09	E3 ubiquitin-protein ligase RGLG4 isoform X3 [Prunus dulcis]	[more]
XP_023533277.1	2.9e-28	42.56	E3 ubiquitin-protein ligase RGLG4 [Cucurbita pepo subsp. pepo]	[more]

Pages

BLAST of Clc02G19860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAL0	5.7e-19	68.25	E3 ubiquitin-protein ligase RGLG4 OS=Arabidopsis thaliana OX=3702 GN=RGLG4 PE=1 ...	[more]
Q8LB88	1.1e-17	68.25	E3 ubiquitin-protein ligase RGLG5 OS=Arabidopsis thaliana OX=3702 GN=RGLG5 PE=1 ...	[more]
Q9LY87	2.4e-17	68.25	E3 ubiquitin-protein ligase RGLG2 OS=Arabidopsis thaliana OX=3702 GN=RGLG2 PE=1 ...	[more]
Q9SS90	5.3e-17	68.25	E3 ubiquitin-protein ligase RGLG1 OS=Arabidopsis thaliana OX=3702 GN=RGLG1 PE=1 ...	[more]
Q8RX26	9.1e-17	65.08	E3 ubiquitin-protein ligase RGLG3 OS=Arabidopsis thaliana OX=3702 GN=RGLG3 PE=1 ...	[more]

BLAST of Clc02G19860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C2F8	3.8e-34	32.54	E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo OX=3656 GN=LOC103496272 PE=4 S...	[more]
A0A0A0KG96	1.2e-30	31.35	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G135420 P...	[more]
A0A6J1KZS5	1.2e-27	42.05	E3 ubiquitin-protein ligase RGLG4 OS=Cucurbita maxima OX=3661 GN=LOC111499741 PE...	[more]
A0A6J1KZS5	9.2e-04	32.62	E3 ubiquitin-protein ligase RGLG4 OS=Cucurbita maxima OX=3661 GN=LOC111499741 PE...	[more]
A0A5A7UIE4	6.1e-24	90.48	E3 ubiquitin-protein ligase RGLG2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Clc02G19860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79380.1	4.1e-20	68.25	Ca(2)-dependent phospholipid-binding protein (Copine) family	[more]
AT1G67800.1	7.6e-19	68.25	Copine (Calcium-dependent phospholipid-binding protein) family	[more]
AT1G67800.2	7.6e-19	68.25	Copine (Calcium-dependent phospholipid-binding protein) family	[more]
AT1G67800.3	7.6e-19	68.25	Copine (Calcium-dependent phospholipid-binding protein) family	[more]
AT1G67800.4	7.6e-19	68.25	Copine (Calcium-dependent phospholipid-binding protein) family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010734	Copine, C-terminal	PFAM	PF07002	Copine	coord: 124..183 e-value: 2.8E-15 score: 56.3
None	No IPR available	PANTHER	PTHR45751	COPINE FAMILY PROTEIN 1	coord: 117..179
None	No IPR available	PANTHER	PTHR45751	COPINE FAMILY PROTEIN 1	coord: 180..206
None	No IPR available	PANTHER	PTHR45751:SF16	E3 UBIQUITIN-PROTEIN LIGASE RGLG4	coord: 117..179
None	No IPR available	PANTHER	PTHR45751:SF16	E3 UBIQUITIN-PROTEIN LIGASE RGLG4	coord: 180..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19860.2	Clc02G19860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane