Clc02G19670 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTAAGAACAATTTCAAATTTTGAAAAACAAAAGAAAAAAACATTTTGAAATTAAATTTATAATTTATATAACGGCCTCTTAATTTTCTACCATATATAGAGAGGTGTGTGCAGCCATTGTACAAGAAAACCGACACTCCCATTTCTCTCTCTCTACTTTCTCTCTCTTCCTCTCCGTAAACAAAAATGGCCGCCGAAGTCAGCTCGCTCGTGCGAGTTCTTACAGGCTACAACAAAGACGACCGTCATCGGACGGTCGGAAACGAATCCGCCGCCGAGAAATTAACGCCTCTGATCACCCGAGACTTACTCAGCGGCGGCTATTCCAAGTTTACAGAGTCCCAAGAACTTGACCTCGATCTCCATGTCCCTTCCGGCTGGGAAAGAAGACTCGATTTGAAGGTACCCATTTTTCTCAATTTCATTAATCAAAACCCAAATTGGAATTCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTCCTATAATTTTAGCCGGCAATGAAACAGAGTATTAGTCAATGAAACAGAGGGTCTTTATTAATTGATTGAATATTTGAATTATTTCAGTCAGGGAAAATGTTTATACAAAGATGCAATGTTCAAGATTTCAACAATAACAATCAAACAGTGCCAAAGCTTCAAGATTTGAATTTTCCACCGTCGCCCAATTTCTCTAAATTTCAATTGTCGAATCATTTGGTCGATGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGTTATCGCCTTCGCCATCGCCATCATCGCCGAGGAGTAATTATCAGAGCGTCTGTACTTTGGATAAGGTCAAATCGGCGCTCGAACGGGCTGAGAGAAATCCCATAAAAAAGCGGTCGTCGTTGTGGAAATCGTCTCCGTCGACGTCGTATTCGTCGTCGTCGTCGTCAGCGGCGGCGGAGAAAGAGTTTCGAGAAGAAGACAACTTGAAATCTTTGTCGTCGCCGATCGCCGCCGGCTGCCCTGGGTGTTTGTCGTATGTGTTGGTGATGATGAACAATCCGACGTGTCCACGGTGTAGCTCCGTCGTGCCGTTGCCGGCGGCTAAGAAACCTCGGATTGATCTCAATATTTCGATTTGATTTTCAAAGAGATGGAAAAGTATTGTTATTGTAGATGGAGGGACAGAAATTATCGTCTTCAAGACATAGATTTTATTTTATTTTTTTCATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTAAGAACAATTTCAAATTTTGAAAAACAAAAGAAAAAAACATTTTGAAATTAAATTTATAATTTATATAACGGCCTCTTAATTTTCTACCATATATAGAGAGGTGTGTGCAGCCATTGTACAAGAAAACCGACACTCCCATTTCTCTCTCTCTACTTTCTCTCTCTTCCTCTCCGTAAACAAAAATGGCCGCCGAAGTCAGCTCGCTCGTGCGAGTTCTTACAGGCTACAACAAAGACGACCGTCATCGGACGGTCGGAAACGAATCCGCCGCCGAGAAATTAACGCCTCTGATCACCCGAGACTTACTCAGCGGCGGCTATTCCAAGTTTACAGAGTCCCAAGAACTTGACCTCGATCTCCATGTCCCTTCCGGCTGGGAAAGAAGACTCGATTTGAAGTCAGGGAAAATGTTTATACAAAGATGCAATGTTCAAGATTTCAACAATAACAATCAAACAGTGCCAAAGCTTCAAGATTTGAATTTTCCACCGTCGCCCAATTTCTCTAAATTTCAATTGTCGAATCATTTGGTCGATGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGTTATCGCCTTCGCCATCGCCATCATCGCCGAGGAGTAATTATCAGAGCGTCTGTACTTTGGATAAGGTCAAATCGGCGCTCGAACGGGCTGAGAGAAATCCCATAAAAAAGCGGTCGTCGTTGTGGAAATCGTCTCCGTCGACGTCGTATTCGTCGTCGTCGTCGTCAGCGGCGGCGGAGAAAGAGTTTCGAGAAGAAGACAACTTGAAATCTTTGTCGTCGCCGATCGCCGCCGGCTGCCCTGGGTGTTTGTCGTATGTGTTGGTGATGATGAACAATCCGACGTGTCCACGGTGTAGCTCCGTCGTGCCGTTGCCGGCGGCTAAGAAACCTCGGATTGATCTCAATATTTCGATTTGATTTTCAAAGAGATGGAAAAGTATTGTTATTGTAGATGGAGGGACAGAAATTATCGTCTTCAAGACATAGATTTTATTTTATTTTTTTCATTTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT ATGGCCGCCGAAGTCAGCTCGCTCGTGCGAGTTCTTACAGGCTACAACAAAGACGACCGTCATCGGACGGTCGGAAACGAATCCGCCGCCGAGAAATTAACGCCTCTGATCACCCGAGACTTACTCAGCGGCGGCTATTCCAAGTTTACAGAGTCCCAAGAACTTGACCTCGATCTCCATGTCCCTTCCGGCTGGGAAAGAAGACTCGATTTGAAGTCAGGGAAAATGTTTATACAAAGATGCAATGTTCAAGATTTCAACAATAACAATCAAACAGTGCCAAAGCTTCAAGATTTGAATTTTCCACCGTCGCCCAATTTCTCTAAATTTCAATTGTCGAATCATTTGGTCGATGAAACCAGTTTGGATTTGAAATTGGTTTCGTCGTTATCGCCTTCGCCATCGCCATCATCGCCGAGGAGTAATTATCAGAGCGTCTGTACTTTGGATAAGGTCAAATCGGCGCTCGAACGGGCTGAGAGAAATCCCATAAAAAAGCGGTCGTCGTTGTGGAAATCGTCTCCGTCGACGTCGTATTCGTCGTCGTCGTCGTCAGCGGCGGCGGAGAAAGAGTTTCGAGAAGAAGACAACTTGAAATCTTTGTCGTCGCCGATCGCCGCCGGCTGCCCTGGGTGTTTGTCGTATGTGTTGGTGATGATGAACAATCCGACGTGTCCACGGTGTAGCTCCGTCGTGCCGTTGCCGGCGGCTAAGAAACCTCGGATTGATCTCAATATTTCGATTTGA MAAEVSSLVRVLTGYNKDDRHRTVGNESAAEKLTPLITRDLLSGGYSKFTESQELDLDLHVPSGWERRLDLKSGKMFIQRCNVQDFNNNNQTVPKLQDLNFPPSPNFSKFQLSNHLVDETSLDLKLVSSLSPSPSPSSPRSNYQSVCTLDKVKSALERAERNPIKKRSSLWKSSPSTSYSSSSSSAAAEKEFREEDNLKSLSSPIAAGCPGCLSYVLVMMNNPTCPRCSSVVPLPAAKKPRIDLNISI Homology
BLAST of Clc02G19670 vs. NCBI nr
Match: XP_038901828.1 (uncharacterized protein LOC120088523 [Benincasa hispida]) HSP 1 Score: 459.5 bits (1181), Expect = 1.8e-125 Identity = 236/248 (95.16%), Postives = 241/248 (97.18%), Query Frame = 0
BLAST of Clc02G19670 vs. NCBI nr
Match: XP_004140015.1 (uncharacterized protein LOC101202760 [Cucumis sativus] >KGN46805.1 hypothetical protein Csa_021089 [Cucumis sativus]) HSP 1 Score: 451.4 bits (1160), Expect = 4.9e-123 Identity = 231/248 (93.15%), Postives = 238/248 (95.97%), Query Frame = 0
BLAST of Clc02G19670 vs. NCBI nr
Match: XP_008456306.1 (PREDICTED: uncharacterized protein LOC103496294 [Cucumis melo] >KAA0054671.1 putative YUP8H12R.23 protein [Cucumis melo var. makuwa] >TYK08600.1 putative YUP8H12R.23 protein [Cucumis melo var. makuwa]) HSP 1 Score: 447.6 bits (1150), Expect = 7.1e-122 Identity = 228/248 (91.94%), Postives = 236/248 (95.16%), Query Frame = 0
BLAST of Clc02G19670 vs. NCBI nr
Match: XP_022970865.1 (uncharacterized protein LOC111469711 [Cucurbita maxima]) HSP 1 Score: 366.3 bits (939), Expect = 2.1e-97 Identity = 200/257 (77.82%), Postives = 216/257 (84.05%), Query Frame = 0
BLAST of Clc02G19670 vs. NCBI nr
Match: XP_022943495.1 (uncharacterized protein LOC111448249 [Cucurbita moschata] >KAG6570588.1 hypothetical protein SDJN03_29503, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010440.1 hypothetical protein SDJN02_27233 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 363.6 bits (932), Expect = 1.3e-96 Identity = 206/257 (80.16%), Postives = 216/257 (84.05%), Query Frame = 0
BLAST of Clc02G19670 vs. ExPASy TrEMBL
Match: A0A0A0KAN5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G137580 PE=4 SV=1) HSP 1 Score: 451.4 bits (1160), Expect = 2.4e-123 Identity = 231/248 (93.15%), Postives = 238/248 (95.97%), Query Frame = 0
BLAST of Clc02G19670 vs. ExPASy TrEMBL
Match: A0A5D3CB81 (Putative YUP8H12R.23 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00220 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122 Identity = 228/248 (91.94%), Postives = 236/248 (95.16%), Query Frame = 0
BLAST of Clc02G19670 vs. ExPASy TrEMBL
Match: A0A1S3C2I3 (uncharacterized protein LOC103496294 OS=Cucumis melo OX=3656 GN=LOC103496294 PE=4 SV=1) HSP 1 Score: 447.6 bits (1150), Expect = 3.4e-122 Identity = 228/248 (91.94%), Postives = 236/248 (95.16%), Query Frame = 0
BLAST of Clc02G19670 vs. ExPASy TrEMBL
Match: A0A6J1I433 (uncharacterized protein LOC111469711 OS=Cucurbita maxima OX=3661 GN=LOC111469711 PE=4 SV=1) HSP 1 Score: 366.3 bits (939), Expect = 1.0e-97 Identity = 200/257 (77.82%), Postives = 216/257 (84.05%), Query Frame = 0
BLAST of Clc02G19670 vs. ExPASy TrEMBL
Match: A0A6J1FXV9 (uncharacterized protein LOC111448249 OS=Cucurbita moschata OX=3662 GN=LOC111448249 PE=4 SV=1) HSP 1 Score: 363.6 bits (932), Expect = 6.5e-97 Identity = 206/257 (80.16%), Postives = 216/257 (84.05%), Query Frame = 0
BLAST of Clc02G19670 vs. TAIR 10
Match: AT1G79160.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16500.1); Has 104 Blast hits to 102 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 104; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 209.9 bits (533), Expect = 2.3e-54 Identity = 139/261 (53.26%), Postives = 168/261 (64.37%), Query Frame = 0
BLAST of Clc02G19670 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 181.8 bits (460), Expect = 6.7e-46 Identity = 133/279 (47.67%), Postives = 168/279 (60.22%), Query Frame = 0
BLAST of Clc02G19670 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 43.5 bits (101), Expect = 2.9e-04 Identity = 23/61 (37.70%), Postives = 40/61 (65.57%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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