Clc02G19620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cyclin-T1-3-like
Location	ClcChr02: 32217049 .. 32222012 (-)
RNA-Seq Expression	Clc02G19620
Synteny	Clc02G19620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCATCATTAATTATTTTTGTTTTTGGAGGGTTCGTCCCATCGTACGAAAGAAAGGAAAAGCAGCGTGAAGATGGCGAGCCTCGAACTCGAACTCGAAGCACCAACAAAATTCTTCAGCTTACCTCACTCTCCACTGCTTTTCATTCTTTCTTCCTCATAAACCCTAACCCTCCATTGCCAAATTTTTCTTCTTCTTCTTCTGGGCATTTTCATCAGCCCTCATTTTCCCTCCCTTAATTTATCTCCGTCCAGTCCAGCAATTGCTCGACTCTTCGCAATTTTCCCACAATTCTTTCTCTGCTCTTTAGCCGCTTTATAAAAGGTATTCTTAATCGCATCATTACGCCCTACTTCTGTAACTTCGATTACTTGCCCATCAATCTCGTATGTAAACGAGCTATTCTTTTGTTTACGCAATCTCTGTTTGTTTGAATCTGAATTTTTAGTTTGGGAACCACTCGTTTATCTTCTGTTAGGATTGTTGTATTTATTTGTTTTTTTTTATTGGGTGATTGCTGGTTGTGTTGCTTGGAATTTTGGGTTTTCTTTTGAATGTTTTTTGCCCGGAAGTCAATGGAAAGATTTGTTCCAATCCAGGGAAGGGGGTAATTAAATGTTTTCTTTGGCTATGGGTGTTGGGGTCGGACATTTTTCCATTTCTTTGTTTTTCTTCGTGGAGCTTGAAGTTGGGGTGTTGGGGATTTGATGAGCACTGCTGTTTTCATCTTGGTTAGCCGCTTTACATGGGGATATACTCATACTGTCCTTTAAATATTGTTCCGAGAGAAATTGTTTTGTGATTTGTCAGCGTCATAAGGTTTCTAGTTTCTCCTTCCAAAACTATCAGTAAAAAATACTATTTGTTTGAGTTATGAACATGTCTTGTGGATTTATGATTGTAATTTGTAAATTACTGGATCTTTCTGTTTTCCTGAATAAGCTATCATTGTCTATGAATCTTGGGTAACAGGATATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAAGCGTTGTATGAAAATAGTGATTCAAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATTCTCACCTTCTAAACAAGATGGGATTGACTTGAAGAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTGTGAGTATTCTAACAATCTGTAACTGTGCTATTGCCTTAAGGCTTATGTCTTCCATTTTGTTTTCCTCAGTGAAAGGCATTCAGTTCTATTGCTGCCTTTTCTTCTGTTCGTCCTTTTAACTGTTGTTTCACTTTCTTTAGAACCTTCTCATGAAACTATTCCATTCACTCCTTGATTTGATTTATTTCCAAGTGTTGTTAAAGAGAGACGTTAAATAGACTCTAAATCTTTTTCTATTGTCTGATTTTGATGTTGCACTATTTATTAACCCAGGTTGCTTTGGGGACATCCATAGTGCTAACACAAATTATTTATCTTTCAAAGAGAGAAATTAAGAATTTTCAGTTTACTCTTCTTTGTCTCCAGCTATCCTCAATTAATTATTCTGTTATCTCAATCCAATATTCAGTGCGTTGTGGTTTTTGTTTTTATTATGCAGTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGGTAAGTTAATTCTTCCAGTTTTTGTTGGGAAATATTTATTTCGTGTGCGTAAGACTAAGAGAATTGTTCTCTCAAGGTGGACAAATTATATTCTTTGTTGATTTCGTTTGCTGGCATTTTTCTATCAACCCTTTGTTGAGAATTTTCAGATGCTCATGCTCAAGGATAAAAGATCTTTTTAAAGCTGGCTTTTTATGTTTTCAATCTTGATATTTTTTCATAGAAGATTATGGAGCTTCAGTGATCTATAGATTGCAAATTCAATTTTTATAACAGGAGCTTTTGTTCTGTTTCTTTTCACACTGTGATGGGTTGGATGGCTTTCTTTTGAAATACACTTTTCATGTTTGAGTGACCAGTTTTGTGAAAAAAGCCAAAGCCTCTTGTCGGAAATTTAATGTCCTTGGACCACGATCATGGACATCTATTATTCTGGTGCTCATGTAGGAATTCCAAATCCATTCTATGTTGGAATTTCATAGATATATAAATAGTGCAATCTCTGATATTGTTCTATAAAAAAATTTGTGCCCGCCCCAAGGCAATGGAATCTCTACCATTTACTGACACATAATAAGTGAGATTACATAACCCTTTTTATCCTCACTCTATGTTTAAGTTTGTTCACTGGAATGTGAAACCAAAATTTATCTGTCCCCATAAATAAAAGCCTCAATAATTTTACACTTCCAAGCTTCCATTCAAAATTATCCATTTTTTAAATGATTAAACTCTTGGCTTGTCTATGTTGTAGGAATTCATTTTGGATCTTCTCTCCCCATACTAGGGCCACTTTGGCAATATTTTTGAGCTTTATAGGTCATGGGAAGAGGTTTAGGGTTTGACGCATGTTAAAATACTTTTTGTTTTGATATCCCCGAGCGTCTGGGCCAGCTTATGCACGTCTGGACTAATTTCATGAGACAACCTGCTTGACCCTACAACATTTGGGTGTTGAAACTCGTAGGATATTAAATCTTAGGTAGGTGACCACCATGTATTGAACCCATGACCTCTTAGCCATTTATTGAAACTATGTCTCCTTTTTTTACCACAAAGCCAACCCATGATGGTTGACGCATGTTAACATACTTGTAAACTCATTTGGAGTTATTCTTTGTTTATGATTGCTATTGGGTGAGGATTTTGAAAAGTTCGTACATTTTTTCAAAAATAATTCCAAGGAATGCAATTCTCTATTATTTTTCCAATTGCTCCTTTGTTTGGGCCATTCTTTTTTGTAGGTTCATTTTCTTTGTACCTTCATTAGTCTTTGAAAATTAGTTTCTTATCTAAAAAGAAAAACGTCACCTTCTGGTCTTCTAATCAAAACTTTGGTTGTTTCTTTCAATTAATATATACCGTACGTTCTTCAAAAGCCAAGTGAAATCTTATGGTCCAATGGGTGATTGTGCTTTGGAAGGTAAAAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCTTCTTCTACTAGGGAAGACACTAGCCAAGTCACCTTTTGGGACCTTGTTAGAATTCAGACACTAGCCAAGTCACCTTTTGGGACCTTGTTAGAATTCTTACTTGCTCTACATATAAGACTTTTGTAATTATTGTGTAATGATCTGACTTCCTAGGACTTGTACTAAGCCATTACTATATGTATGCACAATTTTAACTAAAAATCAAGGAATTTTATTAAGGTAAATAATTTTTGCAAAATCTAAATAATTGAACATTTTTGATCGGGGTACCCCTAAAAGAAACTTATAAATTAACTAGGATCTTTGCATAAAGTGTCTAACAATGTGAATGAAAAAAAAAAGGTTTTGAATTTAAACGACAAGATCATAATTTTTAAACATGAAAACATGAAAACTTGAGTGGAAGTAGCTGAGTAGTCCCAAAGGCACGGTAATGGATTTCTTCCTTCATTCACCGAGGTGTGCTTTCCCATACTTGAAAAACATAACATAAAAAGGATGAGTATAAAATACTCGGTAAGTGCAACATACTAGTGGGACATGCATAAATAAACTAATTCTGGATGACCATTTATTGAGTGATTTAACCCAATGCAACATGCATCTAGTGGCCCGAAGGCTCACAAAAAAAGGCTCACAAGCATAGTAGGGCACCCTCGGCACTTGGTAACATAGTAGGAAACTCGTCGGTTTTCGGGAACATAGTAGGATGTAGGCTTTTGGTAACATAGTAGGAAACCTCTAGGCTTTTGGTAACATAGTAGGAAACCCATTGGCTTCCAATAACATAGTAGTGTTAGGAGGGTAAACCGTCATTTTTTTCTCAAGATATAACATGCTCATAGTAAATTCACATCATAAATCATAGTACATGTCTCAAAGTACCACACATAATCATATCAATCACATGCTAATATCATCATGCTCATAAAACAATTTCAATCATGCCAGGCTTCTCAATTTCATCCAAACTAATCAAATCAGTCAAACTGTCAAAATCACCTGGCTCAAGGGTGGTTCTAGTAATAAAATTACTTACCTTGAGATTAAGCCCAAATAATTGTCCAACAACCAATCCTTCTAATTTCCCCAAACTTGAATTAAATCCTAGGACATGAACCAAAATTAAATTTTAACTTTTAAGTTCAAATTCTAAATCGCAAGTTACCTTAGATGTGTTCAATGAACTTACCCAACTGGAGGCTTGATCCCAAGACCACCTCCAAACTTCCTCACAACACAACTCCAAGTCAAACATCAATATTTGAGGATTAGAACCCAAAAGTACAGTATAATTAGTCCAAAAGGGTTCCAAACTTGGATACTTACAAAAAAAAAAAAAAAAAAACCTGAAAACGGTCCATAACACTTGATGAACAATACGCTAACGCCCTCCAAGTCTTGAATCTAAAACCCAACCAATGGGTGTTGATAGACCAATGCCAAACATTAGTGGGGTATTCAAGATTTTCTAAGAAAATCTATAAAACTCACCTAAACAACCAACTTACTTGAATCTCAAGATTCCAGCGAGATTCGATGACTTGAACAGTGAAAAACCTCAAGGCGAACAGGCGGCACAACTGACAGAAACCGACGACGGCACCTCAAACATTTGGCGAATTGTTGCTGATGAGCGGTGGTGCAAAGTGCGCACGACGAGTGACAACCCAACTCGCGAGATGGCTGTTGGCGAGATCCGGCGGCGGCGTGGCTGGTCGTAGTGATGGGAGCGCAACGTCGAGCAGTTGA

mRNA sequence

GTCATCATTAATTATTTTTGTTTTTGGAGGGTTCGTCCCATCGTACGAAAGAAAGGAAAAGCAGCGTGAAGATGGCGAGCCTCGAACTCGAACTCGAAGCACCAACAAAATTCTTCAGCTTACCTCACTCTCCACTGCTTTTCATTCTTTCTTCCTCATAAACCCTAACCCTCCATTGCCAAATTTTTCTTCTTCTTCTTCTGGGCATTTTCATCAGCCCTCATTTTCCCTCCCTTAATTTATCTCCGTCCAGTCCAGCAATTGCTCGACTCTTCGCAATTTTCCCACAATTCTTTCTCTGCTCTTTAGCCGCTTTATAAAAGGATATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAAGCGTTGTATGAAAATAGTGATTCAAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATTCTCACCTTCTAAACAAGATGGGATTGACTTGAAGAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGAAACCGACGACGGCACCTCAAACATTTGGCGAATTGTTGCTGATGAGCGGTGGTGCAAAGTGCGCACGACGAGTGACAACCCAACTCGCGAGATGGCTGTTGGCGAGATCCGGCGGCGGCGTGGCTGGTCGTAGTGATGGGAGCGCAACGTCGAGCAGTTGA

Coding sequence (CDS)

ATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAAGCGTTGTATGAAAATAGTGATTCAAAGCACTCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATTCTCACCTTCTAAACAAGATGGGATTGACTTGAAGAAGGAGACATATTTACGCAAATCATACTGTACATTTCTCCAAGATTTGGGAATGAGACTTAAAGTTCCCCAGGTAACCATTGCTACAGCTATAATTTTTTGCCATAGGTTCTTTCTACGGCAGTCTCATGCAAAGAATGACCGAAGGAAACCGACGACGGCACCTCAAACATTTGGCGAATTGTTGCTGATGAGCGGTGGTGCAAAGTGCGCACGACGAGTGACAACCCAACTCGCGAGATGGCTGTTGGCGAGATCCGGCGGCGGCGTGGCTGGTCGTAGTGATGGGAGCGCAACGTCGAGCAGTTGA

Protein sequence

MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTTAPQTFGELLLMSGGAKCARRVTTQLARWLLARSGGGVAGRSDGSATSSS

Homology

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BLAST of Clc02G19620 vs. NCBI nr
Match: XP_038901562.1 (cyclin-T1-3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSHQ +YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHQVMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. NCBI nr
Match: XP_038901559.1 (cyclin-T1-3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSHQ +YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHQVMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. NCBI nr
Match: XP_008456310.1 (PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-3-like [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 2.4e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSH A+YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. NCBI nr
Match: XP_011656978.1 (cyclin-T1-3 [Cucumis sativus] >KAE8646875.1 hypothetical protein Csa_020609 [Cucumis sativus])

HSP 1 Score: 212.6 bits (540), Expect = 2.4e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSH A+YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. NCBI nr
Match: XP_022947953.1 (cyclin-T1-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-49
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSS++PSHQA+YENSDSK SQDGLEDGSRWYFSRKELEE+SPS+QDGIDLKKETY
Sbjct: 1   MHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot
Match: Q2QQS5 (Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.5e-35
Identity = 75/105 (71.43%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 9   SDPSHQALYENSDSKHSQDGLED----GSRWYFSRKELEEFSPSKQDGIDLKKETYLRKS 68
           SD SH  + ENS  + +Q   E+    G+ WYFSRKE+EE SPS++DGIDLKKE+YLRKS
Sbjct: 6   SDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYLRKS 65

Query: 69  YCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           YCTFLQDLGMRLKVPQVTIATAI+FCHRF+LRQSHAKNDRR   T
Sbjct: 66  YCTFLQDLGMRLKVPQVTIATAIVFCHRFYLRQSHAKNDRRTIAT 110

[Close]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot
Match: Q2RAC5 (Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 4.3e-35
Identity = 76/111 (68.47%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 3   MENLSSSDPSHQALYENSDSKHSQD----GLEDGSRWYFSRKELEEFSPSKQDGIDLKKE 62
           M+ + +SD SH  + ENS  +   D    G + G+ WYFSRKE+EE S S++DGIDLKKE
Sbjct: 1   MDGIQTSDSSHHGIVENSPYRTPYDRYAEGGQLGASWYFSRKEIEENSLSRRDGIDLKKE 60

Query: 63  TYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           +YLRKSYCTFLQDLGMRLKVPQVTIATAI+FCHRFFLRQSHAKNDRR   T
Sbjct: 61  SYLRKSYCTFLQDLGMRLKVPQVTIATAIVFCHRFFLRQSHAKNDRRTIAT 111

[Close]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot
Match: Q9FKE6 (Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 3.7e-34
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 3   MENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLR 62
           M  + + + S+     +S S++S +  E+ SRWYF RKE+EE SPS+ DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 63  KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF RQSHAKNDRR   T
Sbjct: 61  KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIAT 107

[Close]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot
Match: Q8GYM6 (Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 6.9e-33
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 19  NSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKV 78
           +S S++S +  ++ +RWYF RKE+EE SPS+ D IDLKKETYLRKSYCTFLQDLGMRLKV
Sbjct: 17  SSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKV 76

Query: 79  PQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           PQVTIATAIIFCHRFF+RQSHA+NDRR   T
Sbjct: 77  PQVTIATAIIFCHRFFIRQSHARNDRRTIAT 107

[Close]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot
Match: Q56YF8 (Cyclin-T1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-2 PE=2 SV=2)

HSP 1 Score: 119.8 bits (299), Expect = 2.8e-26
Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 14  QALYEN-----SDSKHSQDGLEDGS--RWYFSRKELEEFSPSKQDGIDLKKETYLRKSYC 73
           +AL EN     SD+      L D     W+FSR+E+E  SPS++DGIDLK ET LR SYC
Sbjct: 3   EALNENASGSESDASSVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYC 62

Query: 74  TFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           TFL+ LG RLKVPQVTIATAI FCHRFFLRQSHAKNDR+   T
Sbjct: 63  TFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIAT 105

[Close]

BLAST of Clc02G19620 vs. ExPASy TrEMBL
Match: A0A0A0KD81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138110 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSH A+YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 20  MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 79

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 80  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 128

[Close]

BLAST of Clc02G19620 vs. ExPASy TrEMBL
Match: A0A1S3C474 (LOW QUALITY PROTEIN: cyclin-T1-3-like OS=Cucumis melo OX=3656 GN=LOC103496297 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.2e-51
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDPSH A+YENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHSAMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. ExPASy TrEMBL
Match: A0A6J1D8M6 (cyclin-T1-3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018042 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.4e-50
Identity = 101/109 (92.66%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSSSDP H A YENSDSKHSQDGLEDGSRWYFSRKELEE+SPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPLHHATYENSDSKHSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSH KNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHVKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. ExPASy TrEMBL
Match: A0A6J1G7W8 (cyclin-T1-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451681 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.4e-50
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSS++PSHQA+YENSDSK SQDGLEDGSRWYFSRKELEE+SPS+QDGIDLKKETY
Sbjct: 1   MHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKETY 60

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 109

[Close]

BLAST of Clc02G19620 vs. ExPASy TrEMBL
Match: A0A6J1I6S4 (cyclin-T1-3-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469683 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.4e-50
Identity = 100/109 (91.74%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MHMENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60
           MHMENLSS++PSHQA+YENSDSK SQDGLEDGSRWYFSRKELEE+SPS+QDGIDLKKETY
Sbjct: 14  MHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKETY 73

Query: 61  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRR   T
Sbjct: 74  LRKSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRTIAT 122

[Close]

BLAST of Clc02G19620 vs. TAIR 10
Match: AT5G45190.1 (Cyclin family protein )

HSP 1 Score: 146.0 bits (367), Expect = 2.6e-35
Identity = 74/107 (69.16%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 3   MENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLR 62
           M  + + + S+     +S S++S +  E+ SRWYF RKE+EE SPS+ DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 63  KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFF RQSHAKNDRR   T
Sbjct: 61  KSYCTFLQDLGMRLKVPQVTIATAIIFCHRFFFRQSHAKNDRRTIAT 107

[Close]

BLAST of Clc02G19620 vs. TAIR 10
Match: AT4G19600.1 (Cyclin family protein )

HSP 1 Score: 141.7 bits (356), Expect = 4.9e-34
Identity = 68/91 (74.73%), Postives = 79/91 (86.81%), Query Frame = 0


Query: 19  NSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKV 78
           +S S++S +  ++ +RWYF RKE+EE SPS+ D IDLKKETYLRKSYCTFLQDLGMRLKV
Sbjct: 17  SSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLRKSYCTFLQDLGMRLKV 76

Query: 79  PQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           PQVTIATAIIFCHRFF+RQSHA+NDRR   T
Sbjct: 77  PQVTIATAIIFCHRFFIRQSHARNDRRTIAT 107

[Close]

BLAST of Clc02G19620 vs. TAIR 10
Match: AT5G45190.2 (Cyclin family protein )

HSP 1 Score: 131.3 bits (329), Expect = 6.6e-31
Identity = 71/118 (60.17%), Postives = 83/118 (70.34%), Query Frame = 0


Query: 3   MENLSSSDPSHQALYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETYLR 62
           M  + + + S+     +S S++S +  E+ SRWYF RKE+EE SPS+ DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 63  KSYCTFLQDLGMRLKV-----------PQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           KSYCTFLQDLGMRLK+             VTIATAIIFCHRFF RQSHAKNDRR   T
Sbjct: 61  KSYCTFLQDLGMRLKLAWFLDIIAYVCTDVTIATAIIFCHRFFFRQSHAKNDRRTIAT 118

[Close]

BLAST of Clc02G19620 vs. TAIR 10
Match: AT4G19560.1 (Cyclin family protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 65/103 (63.11%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 14  QALYEN-----SDSKHSQDGLEDGS--RWYFSRKELEEFSPSKQDGIDLKKETYLRKSYC 73
           +AL EN     SD+      L D     W+FSR+E+E  SPS++DGIDLK ET LR SYC
Sbjct: 3   EALNENASGSESDASSVASNLHDDEIIPWFFSREEIERNSPSRRDGIDLKTETRLRDSYC 62

Query: 74  TFLQDLGMRLKVPQVTIATAIIFCHRFFLRQSHAKNDRRKPTT 110
           TFL+ LG RLKVPQVTIATAI FCHRFFLRQSHAKNDR+   T
Sbjct: 63  TFLEILGERLKVPQVTIATAIFFCHRFFLRQSHAKNDRQTIAT 105

[Close]

BLAST of Clc02G19620 vs. TAIR 10
Match: AT1G27630.1 (cyclin T 1;3 )

HSP 1 Score: 115.2 bits (287), Expect = 4.9e-26
Identity = 50/71 (70.42%), Postives = 63/71 (88.73%), Query Frame = 0


Query: 33  SRWYFSRKELEEFSPSKQDGIDLKKETYLRKSYCTFLQDLGMRLKVPQVTIATAIIFCHR 92
           S+WYFSR+E+E FSPS++DGIDL KE++LR SYCTFLQ LGM+L V QVTI+ A++ CHR
Sbjct: 32  SKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHVSQVTISCAMVMCHR 91

Query: 93  FFLRQSHAKND 104
           F++RQSHAKND
Sbjct: 92  FYMRQSHAKND 102

The following BLAST results are available for this feature:

BLAST of Clc02G19620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901562.1	1.9e-51	95.41	cyclin-T1-3-like isoform X3 [Benincasa hispida]	[more]
XP_038901559.1	1.9e-51	95.41	cyclin-T1-3-like isoform X1 [Benincasa hispida]	[more]
XP_008456310.1	2.4e-51	95.41	PREDICTED: LOW QUALITY PROTEIN: cyclin-T1-3-like [Cucumis melo]	[more]
XP_011656978.1	2.4e-51	95.41	cyclin-T1-3 [Cucumis sativus] >KAE8646875.1 hypothetical protein Csa_020609 [Cuc...	[more]
XP_022947953.1	1.7e-49	91.74	cyclin-T1-3-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Clc02G19620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QQS5	2.5e-35	71.43	Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1	[more]
Q2RAC5	4.3e-35	68.47	Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2	[more]
Q9FKE6	3.7e-34	69.16	Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2	[more]
Q8GYM6	6.9e-33	74.73	Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1	[more]
Q56YF8	2.8e-26	63.11	Cyclin-T1-2 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-2 PE=2 SV=2	[more]

BLAST of Clc02G19620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KD81	1.2e-51	95.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G138110 PE=3 SV=1	[more]
A0A1S3C474	1.2e-51	95.41	LOW QUALITY PROTEIN: cyclin-T1-3-like OS=Cucumis melo OX=3656 GN=LOC103496297 PE...	[more]
A0A6J1D8M6	8.4e-50	92.66	cyclin-T1-3-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111018042 PE=3 ...	[more]
A0A6J1G7W8	8.4e-50	91.74	cyclin-T1-3-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111451681 PE=3 S...	[more]
A0A6J1I6S4	8.4e-50	91.74	cyclin-T1-3-like isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111469683 PE=3 SV=...	[more]

BLAST of Clc02G19620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G45190.1	2.6e-35	69.16	Cyclin family protein	[more]
AT4G19600.1	4.9e-34	74.73	Cyclin family protein	[more]
AT5G45190.2	6.6e-31	60.17	Cyclin family protein	[more]
AT4G19560.1	2.0e-27	63.11	Cyclin family protein	[more]
AT1G27630.1	4.9e-26	70.42	cyclin T 1;3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 23..119 e-value: 5.9E-27 score: 96.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR10026:SF134	SUBFAMILY NOT NAMED	coord: 3..108
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 36..104 e-value: 3.2E-7 score: 30.1
IPR043198	Cyclin/Cyclin-like subunit Ssn8	PANTHER	PTHR10026	CYCLIN	coord: 3..108
IPR013763	Cyclin-like	CDD	cd00043	CYCLIN	coord: 61..103 e-value: 2.00114E-4 score: 36.4477
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 32..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19620.2	Clc02G19620.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity