Clc02G19590 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19590
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LOB domain-containing protein
Location	ClcChr02: 32178586 .. 32181293 (+)
RNA-Seq Expression	Clc02G19590
Synteny	Clc02G19590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGAATTCTTCTTTGGTAGGTCCCTCTAAAGATTTGCCGTCACTTCTCTATATAACATCTTCCATCTTCTTCCTCGTCGCCCCCTCCATTTCTCATCTCTTTTCTTTCACTTCTTGAAAAAGAAAACCTCTAACTCGCGTTTTCAAAACCCAGTTACACCAGAAAATTGGGGTAGAAATTAAAACTATCTCAATTTGCATTCATTGAAGAGAAATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGTTAGTAACTCAAATTATGTTTTCTTATATTACAAATTGTTTTTAATTTAACTAACTGGAGACTCTCAAATTTTCGTCTAATTAACTAATGGAACTATACATTGGTTGACGGTTAAATTAGTTAGCTCCTTTGTCAAAGACAGTAGAGAGGTAGGTTTTCAAATTGTCTATGATTGTATGAACAATGAACCAACAATCCTACTATCCTACTATCCTATTATTTCTACAAACCACACAAATTGACAAAAGAGCCCACATTTACGGACAAAAGAAGGAGAAAAAAAAAAAATTAGGGTTTCATAAAATTATTCTATTTTTTTTAATTAAAAAAAAAATGACATGACACTCTCTTTCATTGGTGTTCCATCTTTTTCTTCAACTTTTTTCACTTTGATTATAAGCCACGACAAGATTAAACGTCCCTATCTCTCTCTTTCACACATTAATTAGTAATTTAGTACACTAATTACTAGTTACTATGGCATTAACTTTTTCAAGGCAAAGTAAAATATCTTGTTGAAAGAAAAAAATAAAAAATAAAAAATACAGTTTCCAACATTTTCAAAACTCACGAGTTCACAATTTAAACACAAGTACAACTATAGGAAACTAATTATCATACGTCCTACCAAGGAAAAAAAAAAAAAAAAACCCACGAGTTAAATTAGGATTAAACAACTAATATACATAAATTCAACTTCTAACAGGAAACACTGAATAAAGTTGAATAATTAAATAAGAGGGTAATGTAAATGTTAGGTATCTTTTATTTATTTCCGTTATAGTGGTTGATTACAGTTGAGGAGCCCACCCTATAGACAAAAATTAAATAAATAAAAAAAAAGTGTCTCAAATATTTCTACTTTTTGAAAAAGCAAACCCCAAAATTGGTTGGAAGACCAATTCAGGAGATTCCTTAGCGTATGAAAGAGTAAAGGGCATGGTTTAATTTGTACTAAATAATTAATCAAACCATGCTTTAATTAACCATAGCCTTTGGTTAATTAACACTTAACTAAAGCAAAGTATAATTTATGTTTTAATTAATTATTTAATCCCCTCAACTTTAACCCATTAGCCTTCTAACTTTTCGAGAAATTACAAGATCAACCTGAACTTTTTTTCCCCTAGCTCCAAAAGAAAGGCAAGATTCTAAATGTTTTTATTTATTTCACTATATTATAAATCAATATTATTTGTGTCATTCTAACGTCACCATGACATCTAAAATCCTTTCTTCTTATAAAAGCAATGTAAATAGTTGGTATGAGTACGTTTCTTTTTAATATTGTAATAACTAATAAAATATATTTGGTTGCATTTTGGTTTGTAGCTATTTTTGTGCGACTCACTCAATTTCAATCTCAGTTTACCATGTGGTAAACTTATTTCATTTTTATATAATTAGTAAAAATTAGAAAATTCTCAATATACTCCTAAAGATGGTTTCTCTTTGGGTTTACCATTCTTTAGTGGAATTTTTTTTCCTAAATACTCATTTGGATTTTATGGGCTATGATATATCCATATTAGATCATAAAGTTTTATTTCAAAACTAATTGACGAGAGAGAGTGAAATAACCATATTTCTTATATAGATTGTGACGTTTTTCCATGGTTAACAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAGCTAATTAATTTAAGCTTTTAGGCGTGCGCTCTTTTGCCTTCACTTTTTATTTTTATTTTTTTCTTTTTTCCTTCTTAATTTTCCTAATTATCATTATAATGTGCTTTTCTTTATCATTATAATGGGGCTTGCTTTATTGTACGTTTGCTTTTATTAATACTTTTTTTTTTCTTCGTTGTCTCTTTATATATATATATGTAAGTACTTTGTAGAAAAGAAAACAGGGCTACGCGGAGAGATCATTATGATGATTATTGATAACCATATTGTAAATGCTTAAACAATATAATGTAATTAATTATGAGGTGTCACATATCTATATGTTTAATTTTAATCTATACTATTCA

mRNA sequence

AAAGAATTCTTCTTTGGTAGGTCCCTCTAAAGATTTGCCGTCACTTCTCTATATAACATCTTCCATCTTCTTCCTCGTCGCCCCCTCCATTTCTCATCTCTTTTCTTTCACTTCTTGAAAAAGAAAACCTCTAACTCGCGTTTTCAAAACCCAGTTACACCAGAAAATTGGGGTAGAAATTAAAACTATCTCAATTTGCATTCATTGAAGAGAAATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAGCTAATTAATTTAAGCTTTTAGGCGTGCGCTCTTTTGCCTTCACTTTTTATTTTTATTTTTTTCTTTTTTCCTTCTTAATTTTCCTAATTATCATTATAATGTGCTTTTCTTTATCATTATAATGGGGCTTGCTTTATTGTACGTTTGCTTTTATTAATACTTTTTTTTTTCTTCGTTGTCTCTTTATATATATATATGTAAGTACTTTGTAGAAAAGAAAACAGGGCTACGCGGAGAGATCATTATGATGATTATTGATAACCATATTGTAAATGCTTAAACAATATAATGTAATTAATTATGAGGTGTCACATATCTATATGTTTAATTTTAATCTATACTATTCA

Coding sequence (CDS)

ATGAAGGAGATCGGTGGAAGAAAACAAGGCACATCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCAATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCGGTGTACGGTTGCGTTGGAGCAATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCTACCTCCTGCAACCCGACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG

Protein sequence

MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC

Homology

[Close]

BLAST of Clc02G19590 vs. NCBI nr
Match: XP_038902133.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 167/173 (96.53%), Postives = 169/173 (97.69%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEINGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPS+SCN T GHSPET SPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC
Sbjct: 121 RQFPSSSCNLTIGHSPETASPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173

[Close]

BLAST of Clc02G19590 vs. NCBI nr
Match: XP_004150042.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical protein Csa_020952 [Cucumis sativus])

HSP 1 Score: 335.1 bits (858), Expect = 3.6e-88
Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R FPS+S NPTAGHSPET SPS KMNIPAPNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of Clc02G19590 vs. NCBI nr
Match: KAA0054642.1 (LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB domain-containing protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 1.7e-85
Identity = 161/173 (93.06%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R  PS+S NPT GHS ET SPS KMNIP PNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of Clc02G19590 vs. NCBI nr
Match: XP_022149611.1 (LOB domain-containing protein 4 [Momordica charantia])

HSP 1 Score: 300.8 bits (769), Expect = 7.4e-78
Identity = 154/173 (89.02%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE  GRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPSTS  P+A HSPET   +GK+NIPA NKS+F+MDMV HDNMGESLWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPET---AGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of Clc02G19590 vs. NCBI nr
Match: XP_023533072.1 (LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 296.2 bits (757), Expect = 1.8e-76
Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE  GRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF S+S NPTAGHSPET SPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETVSPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.1e-59
Identity = 124/173 (71.68%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE   RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 RQFPSTSCNPTAGHSPETT-SPSGKMNIPAPNKSYFS-MDMVDHDNMGESLWS 172
           RQ  +   +     SP ++ SPS K   P  NK  FS MD+VD  ++GES+WS
Sbjct: 121 RQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.9e-44
Identity = 98/170 (57.65%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R     
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRI 124

Query: 126 STSCNPTAGHSPETTSPSGKMNIPAPNKSYFS---MDMVDHDNMGESLWS 172
            T   P    +   T PS        NK ++S   M +   D+ G+ LWS
Sbjct: 125 HTKPPPYTAST--VTFPS--------NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 178.7 bits (452), Expect = 5.6e-44
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.9e-39
Identity = 75/120 (62.50%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPT 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+  +T   P+
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

[Close]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot
Match: Q9LQR0 (LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-37
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

[Close]

BLAST of Clc02G19590 vs. ExPASy TrEMBL
Match: A0A0A0KBA8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 1.7e-88
Identity = 165/173 (95.38%), Postives = 168/173 (97.11%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R FPS+S NPTAGHSPET SPS KMNIPAPNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHFPSSSYNPTAGHSPETASPSSKMNIPAPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of Clc02G19590 vs. ExPASy TrEMBL
Match: A0A5D3CBA3 (LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3734G00510 PE=3 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 8.0e-86
Identity = 161/173 (93.06%), Postives = 164/173 (94.80%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKEI GRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           R  PS+S NPT GHS ET SPS KMNIP PNKSYFSMDMVDHD+MGE+LWSSC
Sbjct: 121 RHIPSSSYNPTMGHSSETASPSSKMNIPVPNKSYFSMDMVDHDSMGETLWSSC 173

[Close]

BLAST of Clc02G19590 vs. ExPASy TrEMBL
Match: A0A6J1D8X3 (LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 PE=3 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.6e-78
Identity = 154/173 (89.02%), Postives = 160/173 (92.49%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE  GRKQGT LSPCAACKLLRRRCA DCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKESSGRKQGT-LSPCAACKLLRRRCAHDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANAR+RDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARMRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQFPSTS  P+A HSPET   +GK+NIPA NKS+F+MDMV HDNMGESLWSSC
Sbjct: 121 RQFPSTS-TPSAAHSPET---AGKLNIPAQNKSFFTMDMVGHDNMGESLWSSC 168

[Close]

BLAST of Clc02G19590 vs. ExPASy TrEMBL
Match: A0A6J1I1K8 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.9e-77
Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE  GRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF S+S NPTAGHSPET SPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of Clc02G19590 vs. ExPASy TrEMBL
Match: A0A6J1G6E3 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111451283 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.9e-77
Identity = 153/173 (88.44%), Postives = 159/173 (91.91%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE  GRKQG +++PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML
Sbjct: 1   MKE-SGRKQG-AVAPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELPE QRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQT+LAIAQAEVVHMRM
Sbjct: 61  QELPEHQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTELAIAQAEVVHMRM 120

Query: 121 RQFPSTSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 174
           RQF S+S NPTAGHSPET SPSGK+NIP  NKSYFSM     DNMGESLWSSC
Sbjct: 121 RQFTSSSSNPTAGHSPETASPSGKINIPPQNKSYFSM-----DNMGESLWSSC 166

[Close]

BLAST of Clc02G19590 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 229.9 bits (585), Expect = 1.5e-60
Identity = 124/173 (71.68%), Postives = 140/173 (80.92%), Query Frame = 0


Query: 1   MKEIGGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKML 60
           MKE   RKQG + SPCAACKLLRRRCAQDCVF+PYFPADEP KFA+VH+VFGASNVNKML
Sbjct: 1   MKE-SSRKQGAA-SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKML 60

Query: 61  QELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRM 120
           QELP  QR DAVSSMVYEANARVRDPVYGCVGAISSLQQQID+LQ QLA+AQAEVVH+R+
Sbjct: 61  QELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRV 120

Query: 121 RQFPSTSCNPTAGHSPETT-SPSGKMNIPAPNKSYFS-MDMVDHDNMGESLWS 172
           RQ  +   +     SP ++ SPS K   P  NK  FS MD+VD  ++GES+WS
Sbjct: 121 RQSTNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMWS 171

[Close]

BLAST of Clc02G19590 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 180.3 bits (456), Expect = 1.4e-45
Identity = 98/170 (57.65%), Postives = 119/170 (70.00%), Query Frame = 0


Query: 6   GRKQGTSLSPCAACKLLRRRCAQD-CVFAPYFPADEPHKFASVHKVFGASNVNKMLQELP 65
           G + G ++SPCA CKLLRR+C +D CVFAPYFPA EP+KFA VHK+FGASNVNKMLQEL 
Sbjct: 5   GHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELS 64

Query: 66  EQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFP 125
           E  RSDAV SMVYEANAR++DPVYGCVG ISSL +Q++ LQTQLA AQAE++H+R     
Sbjct: 65  ENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRI 124

Query: 126 STSCNPTAGHSPETTSPSGKMNIPAPNKSYFS---MDMVDHDNMGESLWS 172
            T   P    +   T PS        NK ++S   M +   D+ G+ LWS
Sbjct: 125 HTKPPPYTAST--VTFPS--------NKDFYSDIDMAVAYTDDAGDFLWS 164

[Close]

BLAST of Clc02G19590 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 178.7 bits (452), Expect = 4.0e-45
Identity = 84/116 (72.41%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 10  GTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRS 69
           G   SPCA+CKLLRRRCA+DC+FAPYFP D+PHKFA VHKVFGASNV+KMLQELP  QR+
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPS 126
           DAV+S+V+EANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++M+  P+
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPT 118

[Close]

BLAST of Clc02G19590 vs. TAIR 10
Match: AT2G40470.1 (LOB domain-containing protein 15 )

HSP 1 Score: 163.7 bits (413), Expect = 1.3e-40
Identity = 75/120 (62.50%), Postives = 98/120 (81.67%), Query Frame = 0


Query: 12  SLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDA 71
           +++PCAACKLLRRRCAQ+C F+PYF   EPHKFASVHKVFGASNV+KML E+PE QR+DA
Sbjct: 42  TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADA 101

Query: 72  VSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSTSCNPT 131
            +S+VYEAN R+RDPVYGC+GAIS+LQQQ+  LQ +L   ++E++  + R+  +T   P+
Sbjct: 102 ANSLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

[Close]

BLAST of Clc02G19590 vs. TAIR 10
Match: AT1G07900.1 (LOB domain-containing protein 1 )

HSP 1 Score: 155.6 bits (392), Expect = 3.6e-38
Identity = 74/110 (67.27%), Postives = 89/110 (80.91%), Query Frame = 0


Query: 13  LSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAV 72
           LSPCAACK+LRRRCA+ CV APYFP  +P KF   H+VFGASN+ K LQELPE QR+DAV
Sbjct: 31  LSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAV 90

Query: 73  SSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQ 123
           +SMVYEA AR+RDPVYGC GAI  LQ+Q+  LQ QLA AQ E+V+M+ ++
Sbjct: 91  NSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQR 140

The following BLAST results are available for this feature:

BLAST of Clc02G19590 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902133.1	1.4e-89	96.53	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_004150042.1	3.6e-88	95.38	LOB domain-containing protein 4 [Cucumis sativus] >KGN46813.1 hypothetical prote...	[more]
KAA0054642.1	1.7e-85	93.06	LOB domain-containing protein 4-like [Cucumis melo var. makuwa] >TYK08620.1 LOB ...	[more]
XP_022149611.1	7.4e-78	89.02	LOB domain-containing protein 4 [Momordica charantia]	[more]
XP_023533072.1	1.8e-76	88.44	LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc02G19590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	2.1e-59	71.68	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q9SA51	1.9e-44	57.65	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q8LBW3	5.6e-44	72.41	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q8L5T5	1.9e-39	62.50	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]
Q9LQR0	5.1e-37	67.27	LOB domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=LBD1 PE=2 SV=...	[more]

BLAST of Clc02G19590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBA8	1.7e-88	95.38	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G139130 PE=3 SV...	[more]
A0A5D3CBA3	8.0e-86	93.06	LOB domain-containing protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1D8X3	3.6e-78	89.02	LOB domain-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111017996 P...	[more]
A0A6J1I1K8	8.9e-77	88.44	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111469678...	[more]
A0A6J1G6E3	8.9e-77	88.44	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114512...	[more]

BLAST of Clc02G19590 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	1.5e-60	71.68	LOB domain-containing protein 4	[more]
AT1G16530.1	1.4e-45	57.65	ASYMMETRIC LEAVES 2-like 9	[more]
AT2G30130.1	4.0e-45	72.41	Lateral organ boundaries (LOB) domain family protein	[more]
AT2G40470.1	1.3e-40	62.50	LOB domain-containing protein 15	[more]
AT1G07900.1	3.6e-38	67.27	LOB domain-containing protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..146
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 2..169
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 2..169
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 1.0E-43 score: 147.9
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..115 score: 27.38965

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19590.1	Clc02G19590.1	mRNA