Clc02G19235 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19235
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	WLM domain-containing protein
Location	ClcChr02: 31811151 .. 31811452 (+)
RNA-Seq Expression	Clc02G19235
Synteny	Clc02G19235

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTATTACAGCTTAATCCCATTATCTAGAAGAATGTTGCCAACTATAAAGGTTAGTTTTGTGTGCATCTGTATTCAGTAGTACTTAAAAGCAACAAAAGAAGGAAAACCAACTAATAATTCAATTCTTGTATATTTTTTAATGCAGCTGCATTGGAGATCCTGTTCTTGATAGGTTTCATTGAAGATGCACTGCTAGATGAAATCGGGAAGGCAGAAACATTCCTTGTACTGAAGCGCAATGATCCTGGCTTATTGTGGCTTGCGAAATCTACCATTGAAACATGCAATGCCCCGTAG

mRNA sequence

ATGATCTTAATCCCATTATCTAGAAGAATGTTGCCAACTATAAAGGTTACTGCATTGGAGATCCTGTTCTTGATAGGTTTCATTGAAGATGCACTGCTAGATGAAATCGGGAAGGCAGAAACATTCCTTGTACTGAAGCGCAATGATCCTGGCTTATTGTGGCTTGCGAAATCTACCATTGAAACATGCAATGCCCCGTAG

Coding sequence (CDS)

ATGATCTTAATCCCATTATCTAGAAGAATGTTGCCAACTATAAAGGTTACTGCATTGGAGATCCTGTTCTTGATAGGTTTCATTGAAGATGCACTGCTAGATGAAATCGGGAAGGCAGAAACATTCCTTGTACTGAAGCGCAATGATCCTGGCTTATTGTGGCTTGCGAAATCTACCATTGAAACATGCAATGCCCCGTAG

Protein sequence

MILIPLSRRMLPTIKVTALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNAP

Homology

[Close]

BLAST of Clc02G19235 vs. NCBI nr
Match: XP_004143191.3 (uncharacterized protein LOC101220832 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 642 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 689

[Close]

BLAST of Clc02G19235 vs. NCBI nr
Match: KAE8646929.1 (hypothetical protein Csa_021071 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 857 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 904

[Close]

BLAST of Clc02G19235 vs. NCBI nr
Match: XP_008456391.1 (PREDICTED: uncharacterized protein LOC103496343 [Cucumis melo] >KAA0054508.1 putative Ubiquitin and WLM domain-containing protein [Cucumis melo var. makuwa] >TYJ98287.1 putative Ubiquitin and WLM domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 642 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 689

[Close]

BLAST of Clc02G19235 vs. NCBI nr
Match: XP_038901675.1 (uncharacterized protein LOC120088443 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 8.1e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 637 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 684

[Close]

BLAST of Clc02G19235 vs. NCBI nr
Match: XP_022149685.1 (uncharacterized protein LOC111018052 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 8   RRMLPTIK------VTALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIE 66
           R+  PTI+        ALEILFLIGFIED LLDEIGK ETFLVLKRNDPGLLWLAKST+E
Sbjct: 655 RKANPTIQKNVANYKAALEILFLIGFIEDVLLDEIGKTETFLVLKRNDPGLLWLAKSTLE 714

[Close]

BLAST of Clc02G19235 vs. ExPASy TrEMBL
Match: A0A5A7UHQ6 (Putative Ubiquitin and WLM domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold203G00330 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 642 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 689

[Close]

BLAST of Clc02G19235 vs. ExPASy TrEMBL
Match: A0A0A0KF59 (WLM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169280 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 711 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 758

[Close]

BLAST of Clc02G19235 vs. ExPASy TrEMBL
Match: A0A1S3C3T6 (uncharacterized protein LOC103496343 OS=Cucumis melo OX=3656 GN=LOC103496343 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.9e-17
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCNA 66
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ETCNA
Sbjct: 642 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETCNA 689

[Close]

BLAST of Clc02G19235 vs. ExPASy TrEMBL
Match: A0A6J1D6E8 (uncharacterized protein LOC111018052 OS=Momordica charantia OX=3673 GN=LOC111018052 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.6e-16
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 8   RRMLPTIK------VTALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIE 66
           R+  PTI+        ALEILFLIGFIED LLDEIGK ETFLVLKRNDPGLLWLAKST+E
Sbjct: 655 RKANPTIQKNVANYKAALEILFLIGFIEDVLLDEIGKTETFLVLKRNDPGLLWLAKSTLE 714

[Close]

BLAST of Clc02G19235 vs. ExPASy TrEMBL
Match: A0A6J1JF11 (uncharacterized protein LOC111483826 OS=Cucurbita maxima OX=3661 GN=LOC111483826 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIETCN 65
           ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKST+ET N
Sbjct: 640 ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTLETFN 686

[Close]

BLAST of Clc02G19235 vs. TAIR 10
Match: AT5G35690.1 (CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR018997), PUG domain (InterPro:IPR006567); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT1G55915.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 3.9e-09
Identity = 25/44 (56.82%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 18  ALEILFLIGFIEDALLDEIGKAETFLVLKRNDPGLLWLAKSTIE 62
           A+EIL ++GF+++ + +  G  E +LVLKRNDPGLLW+AKS IE
Sbjct: 553 AVEILSVVGFVDEMVSESTGAQEPYLVLKRNDPGLLWIAKSMIE 596

The following BLAST results are available for this feature:

BLAST of Clc02G19235 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143191.3	8.1e-17	97.92	uncharacterized protein LOC101220832 [Cucumis sativus]	[more]
KAE8646929.1	8.1e-17	97.92	hypothetical protein Csa_021071 [Cucumis sativus]	[more]
XP_008456391.1	8.1e-17	97.92	PREDICTED: uncharacterized protein LOC103496343 [Cucumis melo] >KAA0054508.1 put...	[more]
XP_038901675.1	8.1e-17	97.92	uncharacterized protein LOC120088443 [Benincasa hispida]	[more]
XP_022149685.1	5.3e-16	76.56	uncharacterized protein LOC111018052 [Momordica charantia]	[more]

BLAST of Clc02G19235 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G19235 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHQ6	3.9e-17	97.92	Putative Ubiquitin and WLM domain-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A0A0KF59	3.9e-17	97.92	WLM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G169280 PE=4 SV...	[more]
A0A1S3C3T6	3.9e-17	97.92	uncharacterized protein LOC103496343 OS=Cucumis melo OX=3656 GN=LOC103496343 PE=...	[more]
A0A6J1D6E8	2.6e-16	76.56	uncharacterized protein LOC111018052 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1JF11	2.2e-15	95.74	uncharacterized protein LOC111483826 OS=Cucurbita maxima OX=3661 GN=LOC111483826...	[more]

BLAST of Clc02G19235 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35690.1	3.9e-09	56.82	CONTAINS InterPro DOMAIN/s: WLM (InterPro:IPR013536), PUB domain (InterPro:IPR01...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47796	ZINC METALLOPROTEINASE-LIKE PROTEIN	coord: 17..64

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19235.1	Clc02G19235.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006850	mitochondrial pyruvate transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane