Clc02G19080 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G19080
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Small ubiquitin-related modifier
Location	ClcChr02: 31623873 .. 31625966 (-)
RNA-Seq Expression	Clc02G19080
Synteny	Clc02G19080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGTTGGTTTCTTTCTTGAGAAATTAAGTTCGTGCTTGAACCTTTTTAATGCTGATGTTTCTTTCATTTGATTTTGATCGCTTGACGTTTTCTGGCTTCTGATCTTTTCTTTCTCTTTTGGATATGTCGGTTAGGCAGCAGGCACCCAAGTAGTAGTATAAATTCTAGGCTTGTGGGGTTTTATTATTGAATCGGTTTTTGGTTGTTCGCGAAATTTGAAGTCCGAAAAAAGGGAAGAAATGGTTAATTGTTTTGAAATTGGAGTTATATGTGACAGGTGCGATAGTTATATTTTGCAATTATAATCTTTCTAAAACTTTCCCTCTGAGAATCTTGCAAATCAAATTAAGTGAAGGGTGGAATTCTTGTTTCCATGTTTGTGTTATATTTGCAGTTCTTTTACGCATTTGGACTGTTCCATTTTTTTCTTTCTGTTTGTTATACTCACTCTGGGGAACAAAATCCTGTCGTAGCTTTGATTGATCTCTTGGAAAAGATTTCGAAGCTGCCCTGCTGTTATAAACTACTATCTGGAATACAAGACTGAGTGTTGGTCCTCCCGTCATGTCCCAGATAAGCTAGTGATTCTTTGATGTCCTAATATACTTTTCTTGGGATGGATTTTGCTGGGATTATTGATTTTTGGGTCTATTGACTACAGATTGACCTTTTGATTCTTTTGAATAGCGCTTTAGGTGTGTTTGTTTAGAATGAATACTAAATCAGTTGTGGGGTTTCTGTGAATTATGGTAGTTTTCTTTTGTTCATTTTGTTGAAATCTATTACGAAATAATCTTCTTCTTCCTTCTGCCTTTTTCTTTTTCTTTTTCTTTTTCCTTTTTCTTAATGTCACTTCCAATGAAGTAGTCTTGATGTATTTTAAAGATTCCAATATATGTGTTTTCAACCAAGCCTTAAAAAATAGAAAGGATATTTTAAGCTCCTATAGTTTCAGTTGAGCCACTTTATTATATTAAATAATAAGAATTGTACTGTAAAACCTGCCACATGCCGAAGAAAGTCTGTCAGCCATCTAAATAGTTTATATACCATGGAAATGTACATTTGTGCGGTCTGTTTTTTTTTTTTTTTTTTAGAAAGAAAGAAAAAAAAAAACCTTGATTCAAATGATACAAATGATGATGATTTAATTGGAGGACTTGTTTAATCTATAAATTAAGTTTTTTTTTTTTTTAATTAAGGCAAGGAAGGGCATGGAGATTGAAGTGTTTATGAATGTTTTAGCTCCATTTCTGTCTCAATCTGTCCTGGAGTGCTTGATCCAATCTTTTTTCTTGTTTCATTGCGATTTTCTAGGGACTGAACCAAATGCTTAGCTCCATTTCTTGTTCTGACATACGTCTCAGTTTCTTTTTTCTTCTTTGTTTCACTTTATCTTTTACCGTTTCCTTTCAACCTCTTTCTTCTTTATCACGTTCTTCCTGCAATTATCAAACTCCTTTTTCCTTTTCGTTTCTTGTTGTTAATTACACCAATTAGTTGGTTAGAAATATGGTTCGGGAGCGTGATGTTTTTCTTGATCTCTTCCTGCAGTGTGGGATTCCTGTTGTAGCCTTATTTTTTGTACCCTTTAGTACATTCTTTCATTTTCTCAATAAAAGCTCAGTTTTTCACCAAAAAAATTATGAGTTTATATTCATGAAAGACTAACCCCTTAGTCCTCAATTTTTATTTACTTTAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGGTAATCCTTTTCTCTTATTATTTAAGCAATCCTATGCTAAATTCATGTATTTTTTCTTTTTTTTTTTAATAAAAGCATGTACTTTTACCAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

mRNA sequence

ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

Coding sequence (CDS)

ATGTCGGGGGTCACAAACACGCAGCAGGAGGAAGACAAGAAGCCCAACGACCAGTCGGCGCATATCAACCTGAAGGTCAAAGGCCAGGACGGAAATGAGGTGTTCTTCAGGATTAAAAGGAGCACTCAGCTGAAGAAACTAATGAATGCTTACTGTGATCGACAATCTGTGGATCTGAACTCCATTGCTTTTCTATTCGACGGACGTCGTCTTCGAGCAGAGCAAACCCCCGATGAGCTAGAGATGGAGGATGGGGATGAGATAGATGCAATGTTGCACCAGACTGGTGGATCTACTCGTTGA

Protein sequence

MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR

Homology

[Close]

BLAST of Clc02G19080 vs. NCBI nr
Match: XP_004150752.1 (small ubiquitin-related modifier 1 [Cucumis sativus] >XP_038902909.1 small ubiquitin-related modifier 1-like [Benincasa hispida] >KGN46994.1 hypothetical protein Csa_020805 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 4.6e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]

BLAST of Clc02G19080 vs. NCBI nr
Match: XP_008456407.1 (PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo] >KAA0054458.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa] >TYK14581.1 small ubiquitin-related modifier 1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.4e-47
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+R
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSR 100

[Close]

BLAST of Clc02G19080 vs. NCBI nr
Match: KAG6570548.1 (Tyrosine-protein phosphatase DSP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 243 MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 302

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 303 SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 341

[Close]

BLAST of Clc02G19080 vs. NCBI nr
Match: XP_022943304.1 (small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022944672.1 small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022986048.1 small ubiquitin-related modifier 1 [Cucurbita maxima] >XP_023512038.1 small ubiquitin-related modifier 1 [Cucurbita pepo subsp. pepo] >XP_023513384.1 small ubiquitin-related modifier 1 [Cucurbita pepo subsp. pepo] >KAG6570547.1 Small ubiquitin-related modifier 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010405.1 Small ubiquitin-related modifier 2 [Cucurbita argyrosperma subsp. argyrosperma] >KAG7010406.1 Small ubiquitin-related modifier 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Clc02G19080 vs. NCBI nr
Match: XP_022970791.1 (small ubiquitin-related modifier 1-like [Cucurbita maxima] >XP_023533825.1 small ubiquitin-related modifier 1-like [Cucurbita pepo subsp. pepo] >KAG6604755.1 Small ubiquitin-related modifier 2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7034883.1 Small ubiquitin-related modifier 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 197.2 bits (500), Expect = 6.7e-47
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGV NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVANTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 99

[Close]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot
Match: P55852 (Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 1.4e-42
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot
Match: Q9FLP6 (Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.5e-41
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 10  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 69
           EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6   EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 70  RLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           RLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  RLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 95

[Close]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot
Match: P55857 (Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.1e-39
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 10 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLF 69
          EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+N+IAFLF
Sbjct: 6  EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLF 65

Query: 70 DGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
          DGRRLR EQTPDELEMEDGDEIDAMLHQTGG
Sbjct: 66 DGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 96

[Close]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot
Match: O13351 (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pmt3 PE=1 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 3.1e-23
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 0


Query: 5   TNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAF 64
           T    ++D KP+ +  HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ F
Sbjct: 21  TGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRF 80

Query: 65  LFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           L DG R+R +QTP EL+MEDGD+I+A+L Q GG T
Sbjct: 81  LVDGERIRPDQTPAELDMEDGDQIEAVLEQLGGCT 113

[Close]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot
Match: Q9FLP5 (Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-20
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 11 EDKKPND--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]

BLAST of Clc02G19080 vs. ExPASy TrEMBL
Match: A0A0A0KDV8 (Small ubiquitin-related modifier OS=Cucumis sativus OX=3659 GN=Csa_6G157680 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 100

[Close]

BLAST of Clc02G19080 vs. ExPASy TrEMBL
Match: A0A5A7UHK7 (Small ubiquitin-related modifier OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00760 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+R
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSR 100

[Close]

BLAST of Clc02G19080 vs. ExPASy TrEMBL
Match: A0A1S3C3V0 (Small ubiquitin-related modifier OS=Cucumis melo OX=3656 GN=LOC103496358 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 99/100 (99.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+R
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSSR 100

[Close]

BLAST of Clc02G19080 vs. ExPASy TrEMBL
Match: A0A6J1FTW7 (Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111448116 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Clc02G19080 vs. ExPASy TrEMBL
Match: A0A6J1JFC9 (Small ubiquitin-related modifier OS=Cucurbita maxima OX=3661 GN=LOC111483904 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.5e-47
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60
           MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN
Sbjct: 1   MSGVTNTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLN 60

Query: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGST 100
           SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS+
Sbjct: 61  SIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSS 99

[Close]

BLAST of Clc02G19080 vs. TAIR 10
Match: AT4G26840.1 (small ubiquitin-like modifier 1 )

HSP 1 Score: 173.3 bits (438), Expect = 9.7e-44
Identity = 85/93 (91.40%), Postives = 88/93 (94.62%), Query Frame = 0


Query: 6  NTQQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFL 65
          +  QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD+NSIAFL
Sbjct: 2  SANQEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFL 61

Query: 66 FDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGS 99
          FDGRRLRAEQTPDEL+MEDGDEIDAMLHQTGGS
Sbjct: 62 FDGRRLRAEQTPDELDMEDGDEIDAMLHQTGGS 94

[Close]

BLAST of Clc02G19080 vs. TAIR 10
Match: AT5G55160.1 (small ubiquitin-like modifier 2 )

HSP 1 Score: 169.9 bits (429), Expect = 1.1e-42
Identity = 85/91 (93.41%), Postives = 86/91 (94.51%), Query Frame = 0


Query: 10  EEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGR 69
           EEDKKP DQ AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVD NSIAFLFDGR
Sbjct: 6   EEDKKP-DQGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNSIAFLFDGR 65

Query: 70  RLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           RLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  RLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 95

[Close]

BLAST of Clc02G19080 vs. TAIR 10
Match: AT5G55160.2 (small ubiquitin-like modifier 2 )

HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40
Identity = 85/104 (81.73%), Postives = 86/104 (82.69%), Query Frame = 0


Query: 10  EEDKKPNDQSAHINLKVKGQ-------------DGNEVFFRIKRSTQLKKLMNAYCDRQS 69
           EEDKKP DQ AHINLKVKGQ             DGNEVFFRIKRSTQLKKLMNAYCDRQS
Sbjct: 6   EEDKKP-DQGAHINLKVKGQAFFVVGTWLVIDTDGNEVFFRIKRSTQLKKLMNAYCDRQS 65

Query: 70  VDLNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGSTR 101
           VD NSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG  +
Sbjct: 66  VDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGGAK 108

[Close]

BLAST of Clc02G19080 vs. TAIR 10
Match: AT5G55170.1 (small ubiquitin-like modifier 3 )

HSP 1 Score: 97.8 bits (242), Expect = 5.2e-21
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 11 EDKKPND--QSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDG 70
          +D KP D  Q AH+ LKVK QDG+EV F+ K+S  LKKLM  YCDR+ + L++ AF+F+G
Sbjct: 5  QDDKPIDQEQEAHVILKVKSQDGDEVLFKNKKSAPLKKLMYVYCDRRGLKLDAFAFIFNG 64

Query: 71 RRLRAEQTPDELEMEDGDEIDAMLHQTGG 98
           R+   +TPDEL+MEDGD IDA    +GG
Sbjct: 65 ARIGGLETPDELDMEDGDVIDACRAMSGG 93

[Close]

BLAST of Clc02G19080 vs. TAIR 10
Match: AT5G55856.1 (Ubiquitin-like superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 7.4e-20
Identity = 45/86 (52.33%), Postives = 63/86 (73.26%), Query Frame = 0


Query: 12 DKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDLNSIAFLFDGRRL 71
          DKKP   S+HI +KVK QD   V+FRIKR  +L+K+M+AY D+  V+++++ FLFDG R+
Sbjct: 5  DKKPLIPSSHITVKVKNQDDICVYFRIKRDVELRKMMHAYSDKVGVEMSTLRFLFDGNRI 64

Query: 72 RAEQTPDELEMEDGDEIDAMLHQTGG 98
          +  QTP+EL +ED DEI+A   Q GG
Sbjct: 65 KLNQTPNELGLEDEDEIEAFGEQLGG 90

The following BLAST results are available for this feature:

BLAST of Clc02G19080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150752.1	4.6e-48	100.00	small ubiquitin-related modifier 1 [Cucumis sativus] >XP_038902909.1 small ubiqu...	[more]
XP_008456407.1	1.4e-47	99.00	PREDICTED: small ubiquitin-related modifier 1 [Cucumis melo] >KAA0054458.1 small...	[more]
KAG6570548.1	5.1e-47	98.99	Tyrosine-protein phosphatase DSP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022943304.1	5.1e-47	98.99	small ubiquitin-related modifier 1 [Cucurbita moschata] >XP_022944672.1 small ub...	[more]
XP_022970791.1	6.7e-47	98.99	small ubiquitin-related modifier 1-like [Cucurbita maxima] >XP_023533825.1 small...	[more]

BLAST of Clc02G19080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P55852	1.4e-42	91.40	Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1...	[more]
Q9FLP6	1.5e-41	93.41	Small ubiquitin-related modifier 2 OS=Arabidopsis thaliana OX=3702 GN=SUMO2 PE=1...	[more]
P55857	9.1e-39	89.01	Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=S...	[more]
O13351	3.1e-23	55.79	Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe (strain 972 / ATCC...	[more]
Q9FLP5	7.3e-20	55.06	Small ubiquitin-related modifier 3 OS=Arabidopsis thaliana OX=3702 GN=SUMO3 PE=1...	[more]

BLAST of Clc02G19080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDV8	2.2e-48	100.00	Small ubiquitin-related modifier OS=Cucumis sativus OX=3659 GN=Csa_6G157680 PE=3...	[more]
A0A5A7UHK7	6.5e-48	99.00	Small ubiquitin-related modifier OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3C3V0	6.5e-48	99.00	Small ubiquitin-related modifier OS=Cucumis melo OX=3656 GN=LOC103496358 PE=3 SV...	[more]
A0A6J1FTW7	2.5e-47	98.99	Small ubiquitin-related modifier OS=Cucurbita moschata OX=3662 GN=LOC111448116 P...	[more]
A0A6J1JFC9	2.5e-47	98.99	Small ubiquitin-related modifier OS=Cucurbita maxima OX=3661 GN=LOC111483904 PE=...	[more]

BLAST of Clc02G19080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G26840.1	9.7e-44	91.40	small ubiquitin-like modifier 1	[more]
AT5G55160.1	1.1e-42	93.41	small ubiquitin-like modifier 2	[more]
AT5G55160.2	6.5e-40	81.73	small ubiquitin-like modifier 2	[more]
AT5G55170.1	5.2e-21	55.06	small ubiquitin-like modifier 3	[more]
AT5G55856.1	7.4e-20	52.33	Ubiquitin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 22..93 e-value: 2.5E-14 score: 63.6
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 20..97 score: 15.906139
IPR022617	Rad60/SUMO-like domain	PFAM	PF11976	Rad60-SLD	coord: 22..92 e-value: 5.3E-25 score: 87.0
None	No IPR available	GENE3D	3.10.20.90		coord: 1..97 e-value: 4.7E-41 score: 141.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR10562	SMALL UBIQUITIN-RELATED MODIFIER	coord: 5..98
None	No IPR available	PANTHER	PTHR10562:SF87	SMALL UBIQUITIN-RELATED MODIFIER	coord: 5..98
None	No IPR available	CDD	cd16116	Ubl_Smt3_like	coord: 20..93 e-value: 8.1392E-48 score: 145.064
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 10..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G19080.1	Clc02G19080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016925	protein sumoylation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031386	protein tag
molecular_function	GO:0044389	ubiquitin-like protein ligase binding
molecular_function	GO:0005515	protein binding