Clc02G18610 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18610
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	riboflavin synthase-like
Location	ClcChr02: 31144816 .. 31148283 (-)
RNA-Seq Expression	Clc02G18610
Synteny	Clc02G18610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACTTTTTCTTCTCTCTCTACTGCCACATCACTATCCAATGTCCCCAAAATGATTCCTCCCAGGGGGAATACAGTCCTCAATCTTCATCTCCCATCCTCCCAATTTTGCCCTAACTTCAATTTCAATACCAACAGATCTCTTTTCACTCTATTCACCTCCACCCACAAGCCTCAATTGCGGTGTAAATTTCGGTCGAGGAGCTCCATTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTTAAACACTTGGGTGTTGCTGAACATGGAGGATTTGATTTGGAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAATCTTGGAGACAGCATTGCTGTCAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTATCGAAATTCAAGGTGGGGTTAGCGCCTGAGACGCTCAGGAAGACTTCTTTGGTGGAACTCACGCCTGGTTCACCTGTGAATTTGGAGAGGGCGCTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAAGGGCATGTGGATGGGACTGGGGAGATCATCTCAATGGATCCTGAGGGGGATTCGTTGTGGATTAAGGTGAAGACATCAGAGGCTTTGCTCAATTACATTGTACCAAAAGGATTTATTGCAGTGGATGGAACAAGCTTGACTGTGGTGGATGTTTTTGATGAGGAGAATGCTTTTAACTTCATGTTGGTTGCTTATACTCAGAAAAACGTGGTCATTCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGGTAGATATTCTTGGCAAGTATGTGCAAAGACTCCTCAGCAATGGTGCCATCGATCCCGTCGAGTCTCCGTGATTACAAAGCCTGGAAAAAAAGAGGTCTCAATAGTTGCAATCTTCTTCTGCATAAAGGCTATAACCTGCTTTGTTATTATTTTTTTTTTTAACCATTATCAAATTTGAGATTGGGAATGAATAAATGGCTGATTTCTATTGTCTTATTATCTCTGTTGTATTAAAACACGATTAGGGAAGGAGACTACTTGTTGTTTATGGAATTGAACACTTTTTCTTAGCAAAGTAATGCTTTAACACTTTTCAGTGCGGTTAGGGATGAATAAAGGGCCTGATGTTCTTGATAGAGTCCAAACTAGAACCAAACTATGTTGAGATATAAAGGATTAAAACAGACAAGATAAACCAAATAATTTGAGGACTTAGACCCTCCCTTTCTTGAGATCTGGTGTAAAACTAAAGACTAAATTTGAATGAATATGAATCTCTACCTCTTAATGAGGGGAGATGGCCTTTATTTATAGGGAAAATGTGATTACAAGTTTGTAAAGAATGCAAACAAATCAAAATAAAAAACTTATTATCAACTAACTAACTATTCCAACCGACTCTCAGCTAGTTACAACAATAAAGCCTCACACTACATCAAGATCACTCAAGCCCTAAACCAACTGAATTAATCACTGTCTTATTGTCTTTGTTGCACTGGAAACATGGCTAGACAAGGATACTATTCTCTGTATTATGAATCTCAACATTTTTTTCAGCAAGGCAATGCTTCTACTCTTTCCATATTTTGCTGTTACACACTCCCAGGAAATTTGAGTAGAATAGTTTATCTTGTCATTTGTCGATATTAAAGTGATTAGATAAAGATAGATATAAATAACCAGCTGAGACTTGAGTATTGAATTGTATATGTATTGAGACAGGTCAATCTTAGGTTAGATCAACAACTCAAAGGAGAGAACTTTTTCAATCAAGTGAAGAATGAAGATGGTTGATGTCGTGTTACCATCTTTAGTGCCTGAACTAGATGGAGACCATAGAAGAAGGTGTATATCGTATTGTGATGGAGTGTATATTCTGTTTTACAGTGGAACAGTTACAACTTAATGATTCCAGGCTTCAACTCTACGATGGATGATTGGCTTATTGAAGAATTAGGTGAAGGGTTTAATGTGCATTTTTTTGCTACCCTGGTGTATGTTTTAGCTTTGATAATTGAACTGCTATTTCTTTTTGTGTTCGTGTGCTAGCTGAGTACATGGAGTTCTCTTTCCATTGATCTTTCTATTTTCTTTTCTCAGCTGAGAAGGATTTCCCTGTTATTTCGTGCCTTTGGCATTTTCAGGTCTGCATCCCATTCTATAAGGTGCGAGTGGTGACTGCAGATAAATTTATTTGGTCCTATTCAAGACTGCATGTTATTTTCAGAGAGTAGGGTTGATTATGGTTAGGAGGTAGATAAGATTTTATTCAATGAGCCGAACATAATATGGCTCGTGCTTTATTAATTGACGGATATTATAGAATCTTCATACGTACAAGTAAAGCACGAGCTACATTATAGTTACCTTCCTGAGTATATATCTTATAAGTTTGATGGATGATTTAGGACATTGCCACTCGTAATCTAAAGTGGGAATGGGAATAGATAGTATTGAGTTGCGTCAAGACAAGTGGATATATATTTTATTGATTAACTTAAGTTTATCTGTTTGAGTTGATAATATCCAATCCAACCCACATTAATTTGAAGAGAAGCATGAATTAGCTCAATTTATTTAATCTAGATATCAAACAAAAGATGAAGCAAACTTTGAAAGATGAGCCAAGTCTTTGTTCAAAGACAAACTTTGAGAGTCAATTCGATTGTCTGATTAGAAGGATGGCTGAAACTCTTGTCATGTTTTTCATGTTTGGTTTCTCAATTACTTAATTCCTTGAGTTCTCTCAAGTGCCCGATCTCTTATAAGGTTTCGTCTACGCTTTGTCTGTTTTCAAAAGGATATCCTATAGTATATTATTTTGACCATTAAGAAGTAATCCATCTTTGCTTTTTATATACTTTTCTTTTTTCTTTTTATGGATAATCATGAATCTCTGGCATGTTTGCAATAGTCTAGGTGAGATACTAATCTTATATGACAATTGATCGATTACCTTGCAACATTTAACATAGGAAAACTTGTAAGGTATTTAAGGGACAAAAAAAGGAAGAAGAGAAGTTTGCTTAAATTTCCTTAGTTTCATATAGAATTATCTTTTTGAATGATTTAGTTTGGATATGAGGCAGGGGAAGATGAAGATGATTGGTTTTTTTTTTTTAATGTGAGGTTGTGGAGAGGCCAGATATTTGGAGCCAATCTACTACAGGGAACTACTATTGTTCACACAAAATAAGTTGACCACTAACCCAATACTCTTGCAATAATTAGTATCACAGGGTGCAAGGGAATGAGAGGTCGGGGTCGGGTCGGTATCAGTGATGGATGGGACATAGATTTTTCATTCTGGTTATCCTCATATGAATTGTAATGAATATTCTAAAACTTAGAGTTGGATTATGTATCAATCAATGTAAATTTTGATGAAAATACAGTACGAATAAAAGTTGTCTTTGTAGTTTTATTTACTTCGTTGCAGTGGATAAATGTAATTGCAGAATACACTTTGA

mRNA sequence

ATGTCTACTTTTTCTTCTCTCTCTACTGCCACATCACTATCCAATGTCCCCAAAATGATTCCTCCCAGGGGGAATACAGTCCTCAATCTTCATCTCCCATCCTCCCAATTTTGCCCTAACTTCAATTTCAATACCAACAGATCTCTTTTCACTCTATTCACCTCCACCCACAAGCCTCAATTGCGGTGTAAATTTCGGTCGAGGAGCTCCATTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTTAAACACTTGGGTGTTGCTGAACATGGAGGATTTGATTTGGAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAATCTTGGAGACAGCATTGCTGTCAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTATCGAAATTCAAGGTGGGGTTAGCGCCTGAGACGCTCAGGAAGACTTCTTTGGTGGAACTCACGCCTGGTTCACCTGTGAATTTGGAGAGGGCGCTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAAGGGCATGTGGATGGGACTGGGGAGATCATCTCAATGGATCCTGAGGGGGATTCGTTGTGGATTAAGAAAAACGTGGTCATTCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGACTCCTCAGCAATGGTGCCATCGATCCCGTCGAGTCTCCGTGATTACAAAGCCTGGAAAAAAAGAGGTCAATCTTAGGTTAGATCAACAACTCAAAGGAGAGAACTTTTTCAATCAATGGAACAGTTACAACTTAATGATTCCAGGCTTCAACTCTACGATGGATGATTGGCTTATTGAAGAATTAGCTGAGAAGGATTTCCCTGTTATTTCGTGCCTTTGGCATTTTCAGGTCTGCATCCCATTCTATAAGAATACACTTTGA

Coding sequence (CDS)

ATGTCTACTTTTTCTTCTCTCTCTACTGCCACATCACTATCCAATGTCCCCAAAATGATTCCTCCCAGGGGGAATACAGTCCTCAATCTTCATCTCCCATCCTCCCAATTTTGCCCTAACTTCAATTTCAATACCAACAGATCTCTTTTCACTCTATTCACCTCCACCCACAAGCCTCAATTGCGGTGTAAATTTCGGTCGAGGAGCTCCATTCAATGCCTTTTCACTGGCATTGTTGAAGAAATAGGCCATGTTAAACACTTGGGTGTTGCTGAACATGGAGGATTTGATTTGGAGATTACTGCCAAAACTGTTCTTGAAGGTGTAAATCTTGGAGACAGCATTGCTGTCAACGGAACTTGTCTTACTGTGACTGCTTTTGATCACCAACTATCGAAATTCAAGGTGGGGTTAGCGCCTGAGACGCTCAGGAAGACTTCTTTGGTGGAACTCACGCCTGGTTCACCTGTGAATTTGGAGAGGGCGCTTCAACCAATCAGCCGAATGGGTGGGCATTTTGTGCAAGGGCATGTGGATGGGACTGGGGAGATCATCTCAATGGATCCTGAGGGGGATTCGTTGTGGATTAAGAAAAACGTGGTCATTCCATTGAAGAAAGTTGGGCAGTTGGTGAATTTGGAGACTCCTCAGCAATGGTGCCATCGATCCCGTCGAGTCTCCGTGATTACAAAGCCTGGAAAAAAAGAGGTCAATCTTAGGTTAGATCAACAACTCAAAGGAGAGAACTTTTTCAATCAATGGAACAGTTACAACTTAATGATTCCAGGCTTCAACTCTACGATGGATGATTGGCTTATTGAAGAATTAGCTGAGAAGGATTTCCCTGTTATTTCGTGCCTTTGGCATTTTCAGGTCTGCATCCCATTCTATAAGAATACACTTTGA

Protein sequence

MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQLRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEGDSLWIKKNVVIPLKKVGQLVNLETPQQWCHRSRRVSVITKPGKKEVNLRLDQQLKGENFFNQWNSYNLMIPGFNSTMDDWLIEELAEKDFPVISCLWHFQVCIPFYKNTL

Homology

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BLAST of Clc02G18610 vs. NCBI nr
Match: XP_038902777.1 (riboflavin synthase [Benincasa hispida])

HSP 1 Score: 387.5 bits (994), Expect = 1.1e-103
Identity = 199/259 (76.83%), Postives = 208/259 (80.31%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           MST SSLSTATSLSN+PKM+PPRGNT+LNLHLPSSQFCPN NFNTNRSLFTLFTSTHKPQ
Sbjct: 1   MSTLSSLSTATSLSNIPKMVPPRGNTLLNLHLPSSQFCPNLNFNTNRSLFTLFTSTHKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
            RCK R R+S+QCLFTGIVEEIG VKHLG+AEHGGFDLEITAKTVLEGVNLGDSIAVNGT
Sbjct: 61  FRCKSRPRTSVQCLFTGIVEEIGRVKHLGIAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELTPG+PVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTPGTPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVKTSEALLNYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

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BLAST of Clc02G18610 vs. NCBI nr
Match: XP_022986014.1 (riboflavin synthase-like [Cucurbita maxima])

HSP 1 Score: 357.5 bits (916), Expect = 1.2e-94
Identity = 186/259 (71.81%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           M+TFSSLSTA SLSN+PKM+PPR + +LN+H  SSQFCP F  NTNRSLFTLFTS  KPQ
Sbjct: 1   MATFSSLSTAISLSNIPKMVPPRRDAILNVHPSSSQFCPRFELNTNRSLFTLFTSCRKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           LRCK R RSS+QCLFTGIVEEIGHVK +G+AEHGGFDL+ITAKTVLEGVNLGDSI+VNGT
Sbjct: 61  LRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELT GSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

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BLAST of Clc02G18610 vs. NCBI nr
Match: XP_023513296.1 (riboflavin synthase-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.4 bits (908), Expect = 9.9e-94
Identity = 185/259 (71.43%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           M+TFSSLSTA SLSN+PKM+PPR + +LN+H  SSQFCP F  N NRSLFTLFTS  KPQ
Sbjct: 1   MATFSSLSTAISLSNIPKMVPPRRDAILNVHPSSSQFCPRFELNMNRSLFTLFTSCRKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           LRCK R RSS+QCLFTGIVEEIGHVK +G+AEHGGFDL+ITAKTVLEGVNLGDSI+VNGT
Sbjct: 61  LRCKPRQRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELT GSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPE DSLWIK                                           
Sbjct: 181 TGEIISMDPEEDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

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BLAST of Clc02G18610 vs. NCBI nr
Match: KAG7010374.1 (rib5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 354.0 bits (907), Expect = 1.3e-93
Identity = 185/259 (71.43%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           M+TFSSLSTA SLSN+PKM+PPR + +LN+H  SSQFCP    NTNRSLFTLFTS  KPQ
Sbjct: 1   MATFSSLSTAISLSNIPKMVPPRRDAILNVHPSSSQFCPRLELNTNRSLFTLFTSCRKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           LRCK R RSS+QCLFTGIVEEIGHVK +G+AEHGGFDL+ITAKTVLEGVNLGDSI+VNGT
Sbjct: 61  LRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELT GSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPE DSLWIK                                           
Sbjct: 181 TGEIISMDPEEDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

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BLAST of Clc02G18610 vs. NCBI nr
Match: TYK04945.1 (riboflavin synthase [Cucumis melo var. makuwa])

HSP 1 Score: 351.3 bits (900), Expect = 8.4e-93
Identity = 186/259 (71.81%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           MSTFSSLSTATSLSN+P+M+PP G    NLHLPSSQF PNFNFNT  SLFTLFTSTHKPQ
Sbjct: 1   MSTFSSLSTATSLSNIPRMLPPMG----NLHLPSSQFFPNFNFNTKTSLFTLFTSTHKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           L  + R R+S+QCLFTGIVEEIGHVK+LG+ E+GG+DLEI AKTVLEGVNLGDSIAVNGT
Sbjct: 61  LCYRSRPRASVQCLFTGIVEEIGHVKNLGIGENGGYDLEINAKTVLEGVNLGDSIAVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVEL+PGSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELSPGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVKTSEALLNYIVPKGFIAVDGTSLTVVDVFDDEKAFNFMLVAY 240

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BLAST of Clc02G18610 vs. ExPASy Swiss-Prot
Match: Q9Y7P0 (Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rib5 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-27
Identity = 63/121 (52.07%), Postives = 82/121 (67.77%), Query Frame = 0


Query: 74  LFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLSK 133
           +FTG+VE IG VK +      GF ++I A  +L+  + GDSIAVNGTCLTVT FD     
Sbjct: 1   MFTGLVEAIGVVKDVQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRY--H 60

Query: 134 FKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEGDS 193
           F VG+APE+LR T+L +   G PVNLERA+   +RMGGHFVQGHVD   EI+    +G++
Sbjct: 61  FTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEA 119

Query: 194 L 195
           +
Sbjct: 121 I 119

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BLAST of Clc02G18610 vs. ExPASy Swiss-Prot
Match: P50854 (Riboflavin synthase OS=Actinobacillus pleuropneumoniae OX=715 GN=ribE PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.7e-25
Identity = 61/125 (48.80%), Postives = 82/125 (65.60%), Query Frame = 0


Query: 74  LFTGIVEEIGHVKHLGVAEHGGFD-LEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLS 133
           +FTGI+EE+G +    + + G F  + I A  VL+ V+LGD+IAVNG CLTVT+F    +
Sbjct: 1   MFTGIIEEVGKIAQ--IHKQGEFAVVTINATKVLQDVHLGDTIAVNGVCLTVTSFSS--N 60

Query: 134 KFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEGD 193
           +F   +  ETL++TSL EL   SPVNLERA+    R GGH V GH+DGTGEI  + P  +
Sbjct: 61  QFTADVMSETLKRTSLGELKSNSPVNLERAMAANGRFGGHIVSGHIDGTGEIAEITPAHN 120

Query: 194 SLWIK 198
           S W +
Sbjct: 121 STWYR 121

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BLAST of Clc02G18610 vs. ExPASy Swiss-Prot
Match: P16440 (Riboflavin synthase OS=Bacillus subtilis (strain 168) OX=224308 GN=ribE PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 3.5e-25
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 0


Query: 74  LFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLSK 133
           +FTGI+EE G ++ +  A H    L I    +LE V+LGDSIAVNG CLTVT  D   ++
Sbjct: 1   MFTGIIEETGTIESMKKAGH-AMALTIKCSKILEDVHLGDSIAVNGICLTVT--DFTKNQ 60

Query: 134 FKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEGDS 193
           F V + PET++ TSL +LT GS VNLERA+    R GGHFV GHVDGT EI  ++ + ++
Sbjct: 61  FTVDVMPETVKATSLNDLTKGSKVNLERAMAANGRFGGHFVSGHVDGTAEITRIEEKSNA 119

Query: 194 LW 196
           ++
Sbjct: 121 VY 119

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BLAST of Clc02G18610 vs. ExPASy Swiss-Prot
Match: A5DB51 (Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) OX=294746 GN=RIB5 PE=2 SV=3)

HSP 1 Score: 116.3 bits (290), Expect = 5.9e-25
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 74  LFTGIVEEIG---HVKHLGVAEHGGFDLEIT---AKTVLEGVNLGDSIAVNGTCLTVTAF 133
           +FTG+VE IG    V        GG  + +       +LE V LGDSI  NG CLTVT F
Sbjct: 1   MFTGLVEHIGTVLQVTEKDTTASGGDGVSMVIGDCSKILEDVQLGDSICTNGVCLTVTEF 60

Query: 134 DHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISM 193
           D   S+FKVG++PETLR++ L EL PGS VNLERA++   RMGGH VQGHVD    I++ 
Sbjct: 61  DMARSQFKVGISPETLRRSDLGELKPGSKVNLERAVKADVRMGGHVVQGHVDTIATIVNR 120

Query: 194 DPEGDSL 195
             +G+++
Sbjct: 121 RGDGNAI 127

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BLAST of Clc02G18610 vs. ExPASy Swiss-Prot
Match: Q44680 (Riboflavin synthase OS=Bacillus amyloliquefaciens OX=1390 GN=ribE PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 60/123 (48.78%), Postives = 79/123 (64.23%), Query Frame = 0


Query: 74  LFTGIVEEIGHVKHLGVAEHG-GFDLEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQLS 133
           +FTGIVEE G ++   + + G    L I A  V   V LGDSIAVNG CLTVT F    +
Sbjct: 1   MFTGIVEETGTIQ--AIKKTGLSMALTIAASKVTSDVRLGDSIAVNGICLTVTGFSD--N 60

Query: 134 KFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEGD 193
           +F V + PET++ TSL  L+ GS VNLERA+    R GGHFV GHVDGT EI  ++ + +
Sbjct: 61  QFTVDVMPETVKATSLNGLSKGSKVNLERAMSANGRFGGHFVSGHVDGTAEITRIEKKSN 119

Query: 194 SLW 196
           +++
Sbjct: 121 AVY 119

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BLAST of Clc02G18610 vs. ExPASy TrEMBL
Match: A0A6J1JEW8 (riboflavin synthase-like OS=Cucurbita maxima OX=3661 GN=LOC111483877 PE=4 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 5.6e-95
Identity = 186/259 (71.81%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           M+TFSSLSTA SLSN+PKM+PPR + +LN+H  SSQFCP F  NTNRSLFTLFTS  KPQ
Sbjct: 1   MATFSSLSTAISLSNIPKMVPPRRDAILNVHPSSSQFCPRFELNTNRSLFTLFTSCRKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           LRCK R RSS+QCLFTGIVEEIGHVK +G+AEHGGFDL+ITAKTVLEGVNLGDSI+VNGT
Sbjct: 61  LRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELT GSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

[Close]

BLAST of Clc02G18610 vs. ExPASy TrEMBL
Match: A0A5D3C0R4 (Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001590 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 4.0e-93
Identity = 186/259 (71.81%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           MSTFSSLSTATSLSN+P+M+PP G    NLHLPSSQF PNFNFNT  SLFTLFTSTHKPQ
Sbjct: 1   MSTFSSLSTATSLSNIPRMLPPMG----NLHLPSSQFFPNFNFNTKTSLFTLFTSTHKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           L  + R R+S+QCLFTGIVEEIGHVK+LG+ E+GG+DLEI AKTVLEGVNLGDSIAVNGT
Sbjct: 61  LCYRSRPRASVQCLFTGIVEEIGHVKNLGIGENGGYDLEINAKTVLEGVNLGDSIAVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVEL+PGSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELSPGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVKTSEALLNYIVPKGFIAVDGTSLTVVDVFDDEKAFNFMLVAY 240

[Close]

BLAST of Clc02G18610 vs. ExPASy TrEMBL
Match: A0A5D3C0R6 (Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G001790 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 9.0e-93
Identity = 185/259 (71.43%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           MSTFSSLSTAT+LSN+P+M+PP G    NLHLPSSQF PNFNFNT  SLFTLFTSTHKPQ
Sbjct: 1   MSTFSSLSTATALSNIPRMLPPMG----NLHLPSSQFFPNFNFNTKTSLFTLFTSTHKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           L  + R R+S+QCLFTGIVEEIGHVK+LG+ E+GG+DLEI AKTVLEGVNLGDSIAVNGT
Sbjct: 61  LCYRSRPRASVQCLFTGIVEEIGHVKNLGIGENGGYDLEINAKTVLEGVNLGDSIAVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVEL+PGSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELSPGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPEGDSLWIK                                           
Sbjct: 181 TGEIISMDPEGDSLWIKVKTSEALLNYIVPKGFIAVDGTSLTVVDVFDDEKAFNFMLVAY 240

[Close]

BLAST of Clc02G18610 vs. ExPASy TrEMBL
Match: A0A5A7V850 (Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G004220 PE=4 SV=1)

HSP 1 Score: 349.7 bits (896), Expect = 1.2e-92
Identity = 185/259 (71.43%), Postives = 199/259 (76.83%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           MSTFSSLSTATSLSN+P+M+PP G    NLHLPSSQF PNFNFNT  SLFTLFTSTHKPQ
Sbjct: 1   MSTFSSLSTATSLSNIPRMLPPMG----NLHLPSSQFFPNFNFNTKTSLFTLFTSTHKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           L  + R R+S+QCLFTGIVEEIGHVK+LG+ E+GG+DLEI AKTVLEGVNLGDSIAVNGT
Sbjct: 61  LCYRSRPRASVQCLFTGIVEEIGHVKNLGIGENGGYDLEINAKTVLEGVNLGDSIAVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVEL+PGSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELSPGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIIS+DPEGDSLWIK                                           
Sbjct: 181 TGEIISVDPEGDSLWIKVKTSEALLNYIVPKGFIAVDGTSWTVVDVFDDEKAFNFMLVAY 240

[Close]

BLAST of Clc02G18610 vs. ExPASy TrEMBL
Match: A0A6J1FU46 (riboflavin synthase-like OS=Cucurbita moschata OX=3662 GN=LOC111448156 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.6e-92
Identity = 183/259 (70.66%), Postives = 196/259 (75.68%), Query Frame = 0


Query: 1   MSTFSSLSTATSLSNVPKMIPPRGNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQ 60
           M+TFSSLSTA SLSN+PKM+PP  + +LN+   SSQFCP F  NTNRSLFT FTS  KPQ
Sbjct: 1   MATFSSLSTAISLSNIPKMVPPTRDAILNVRPSSSQFCPKFELNTNRSLFTQFTSCRKPQ 60

Query: 61  LRCKFRSRSSIQCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGT 120
           LRCK R RSS+QCLFTGIVEEIGHVK +G+AEHGGFDL+ITAKTVLEGVNLGDSI+VNGT
Sbjct: 61  LRCKPRPRSSVQCLFTGIVEEIGHVKQVGIAEHGGFDLKITAKTVLEGVNLGDSISVNGT 120

Query: 121 CLTVTAFDHQLSKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDG 180
           CLTVTAFDHQLS+FKVGLAPETLRKTSLVELT GSPVNLERA+QPISRMGGHFVQGHVDG
Sbjct: 121 CLTVTAFDHQLSEFKVGLAPETLRKTSLVELTAGSPVNLERAVQPISRMGGHFVQGHVDG 180

Query: 181 TGEIISMDPEGDSLWIK------------------------------------------- 215
           TGEIISMDPE DSLWIK                                           
Sbjct: 181 TGEIISMDPEEDSLWIKVRTSEALLKYIVPKGFIAVDGTSLTVVDVFDEEKAFNFMLVAY 240

[Close]

BLAST of Clc02G18610 vs. TAIR 10
Match: AT2G20690.1 (lumazine-binding family protein )

HSP 1 Score: 197.6 bits (501), Expect = 1.4e-50
Identity = 122/248 (49.19%), Postives = 147/248 (59.27%), Query Frame = 0


Query: 16  VPKMIPPR----GNTVLNLHLPSSQFCPNFNFNTNRSLFTLFTSTHKPQLRCKFRSRSSI 75
           +PK+  P+    G +V NL          F+  +  S  +L TS  + +   + R   SI
Sbjct: 12  IPKVCLPQSFRTGESVTNL---------RFDCVSKSSKLSLKTSCGRSRTHHR-RQNLSI 71

Query: 76  QCLFTGIVEEIGHVKHLGVAEHGGFDLEITAKTVLEGVNLGDSIAVNGTCLTVTAFDHQL 135
           + +FTGIVEE+G VK LG+A+HGGFDL+I A+ VLE V LGDSIAVNGTCLTVT F+ + 
Sbjct: 72  RSVFTGIVEEMGEVKDLGMADHGGFDLKIGARVVLEDVKLGDSIAVNGTCLTVTEFNAE- 131

Query: 136 SKFKVGLAPETLRKTSLVELTPGSPVNLERALQPISRMGGHFVQGHVDGTGEIISMDPEG 195
            +F VGLAPETLRKTSL EL  GSPVNLERALQP+SRMGGH VQGHVDGTG I SM+ EG
Sbjct: 132 -EFTVGLAPETLRKTSLEELKKGSPVNLERALQPVSRMGGHVVQGHVDGTGVIESMEVEG 191

Query: 196 DSLWIK---------------------------------------------KNVVIPLKK 215
           DSLW+K                                             +NVVIP KK
Sbjct: 192 DSLWVKVKADKGLLKYIVPKGFVAVDGTSLTVVDVFDEESCFNFMMIAYTQQNVVIPTKK 247

The following BLAST results are available for this feature:

BLAST of Clc02G18610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902777.1	1.1e-103	76.83	riboflavin synthase [Benincasa hispida]	[more]
XP_022986014.1	1.2e-94	71.81	riboflavin synthase-like [Cucurbita maxima]	[more]
XP_023513296.1	9.9e-94	71.43	riboflavin synthase-like [Cucurbita pepo subsp. pepo]	[more]
KAG7010374.1	1.3e-93	71.43	rib5, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
TYK04945.1	8.4e-93	71.81	riboflavin synthase [Cucumis melo var. makuwa]	[more]

BLAST of Clc02G18610 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Y7P0	3.7e-27	52.07	Riboflavin synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=28...	[more]
P50854	2.7e-25	48.80	Riboflavin synthase OS=Actinobacillus pleuropneumoniae OX=715 GN=ribE PE=3 SV=1	[more]
P16440	3.5e-25	50.00	Riboflavin synthase OS=Bacillus subtilis (strain 168) OX=224308 GN=ribE PE=1 SV=...	[more]
A5DB51	5.9e-25	48.82	Riboflavin synthase OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566 / D...	[more]
Q44680	1.2e-22	48.78	Riboflavin synthase OS=Bacillus amyloliquefaciens OX=1390 GN=ribE PE=3 SV=1	[more]

BLAST of Clc02G18610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JEW8	5.6e-95	71.81	riboflavin synthase-like OS=Cucurbita maxima OX=3661 GN=LOC111483877 PE=4 SV=1	[more]
A0A5D3C0R4	4.0e-93	71.81	Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G...	[more]
A0A5D3C0R6	9.0e-93	71.43	Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G...	[more]
A0A5A7V850	1.2e-92	71.43	Riboflavin synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G0...	[more]
A0A6J1FU46	2.6e-92	70.66	riboflavin synthase-like OS=Cucurbita moschata OX=3662 GN=LOC111448156 PE=4 SV=1	[more]

BLAST of Clc02G18610 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20690.1	1.4e-50	49.19	lumazine-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	GENE3D	2.40.30.20		coord: 74..164 e-value: 7.0E-26 score: 91.9
IPR026017	Lumazine-binding domain	PFAM	PF00677	Lum_binding	coord: 76..162 e-value: 1.7E-21 score: 76.0
IPR026017	Lumazine-binding domain	PROSITE	PS51177	LUMAZINE_BIND	coord: 74..172 score: 24.643877
None	No IPR available	PANTHER	PTHR21098:SF0	RIBOFLAVIN SYNTHASE	coord: 67..197
IPR001783	Lumazine-binding protein	PANTHER	PTHR21098	RIBOFLAVIN SYNTHASE ALPHA CHAIN	coord: 67..197
IPR001783	Lumazine-binding protein	CDD	cd00402	Riboflavin_synthase_like	coord: 75..215 e-value: 6.60977E-59 score: 184.898
IPR017938	Riboflavin synthase-like beta-barrel	SUPERFAMILY	63380	Riboflavin synthase domain-like	coord: 74..165
IPR017938	Riboflavin synthase-like beta-barrel	SUPERFAMILY	63380	Riboflavin synthase domain-like	coord: 168..218

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18610.1	Clc02G18610.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009231	riboflavin biosynthetic process
molecular_function	GO:0004746	riboflavin synthase activity