Clc02G18580 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18580
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type domain-containing protein
Location	ClcChr02: 31110609 .. 31111367 (-)
RNA-Seq Expression	Clc02G18580
Synteny	Clc02G18580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAGCAGTACCTTGAAGAGACTTTGATGCAAAACAACAATTCATTTGGAGGAGACAAGTTCTGTTTAGACAACCAAACATATGTTTCAGATGGTGATGATGGAGCTTCCCATGGCTTTGACTGCAACATATGCTTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCTTGCATTTATAAATGGCTTCATTACAATAACTTATCTGCACAGCAACAATGCGAACCAGAGGAATGCCGTTGCCCCGTTTGCAAGGCCGAAGTCTCCCACACAACTCTCATCCCGCTCTACGGAGAATTCCAGACTAAAAATGCCTCCAAAGCTAAAGCACCATCAAATCTTGGCCCAACCATCCCTCGGAGGCCACTTGGCCGTGCCTGTGGAACAGAGGCACCAGCATCTCCAAGTCCCCGACTTCATCCTCACAACTATTCTCCTCAGTCACACTCATACTACTCACGAACACAAAACGACTACATCGCATCGTCGATGCTCAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCGATTTACGCAAGAACATTCGGAAACACAACAACAAACCTATACACTTATCCAAATTCATATGGTCATGTGAGCAACAGTAGTGTAAGGCTAAGGAGGCACATAATGCAGGCTGATGAATCACTAAGCAGAATCTGTTTCTTCCTTTTTTGCTGCTTAGTTATATGTCTTCTGTTATTCTAA

mRNA sequence

ATGGAACAGCAGTACCTTGAAGAGACTTTGATGCAAAACAACAATTCATTTGGAGGAGACAAGTTCTGTTTAGACAACCAAACATATGTTTCAGATGGTGATGATGGAGCTTCCCATGGCTTTGACTGCAACATATGCTTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCTTGCATTTATAAATGGCTTCATTACAATAACTTATCTGCACAGCAACAATGCGAACCAGAGGAATGCCGTTGCCCCGTTTGCAAGGCCGAAGTCTCCCACACAACTCTCATCCCGCTCTACGGAGAATTCCAGACTAAAAATGCCTCCAAAGCTAAAGCACCATCAAATCTTGGCCCAACCATCCCTCGGAGGCCACTTGGCCGTGCCTGTGGAACAGAGGCACCAGCATCTCCAAGTCCCCGACTTCATCCTCACAACTATTCTCCTCAGTCACACTCATACTACTCACGAACACAAAACGACTACATCGCATCGTCGATGCTCAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCGATTTACGCAAGAACATTCGGAAACACAACAACAAACCTATACACTTATCCAAATTCATATGGTCATGTGAGCAACAGTAGTGTAAGGCTAAGGAGGCACATAATGCAGGCTGATGAATCACTAAGCAGAATCTGTTTCTTCCTTTTTTGCTGCTTAGTTATATGTCTTCTGTTATTCTAA

Coding sequence (CDS)

ATGGAACAGCAGTACCTTGAAGAGACTTTGATGCAAAACAACAATTCATTTGGAGGAGACAAGTTCTGTTTAGACAACCAAACATATGTTTCAGATGGTGATGATGGAGCTTCCCATGGCTTTGACTGCAACATATGCTTAGACTCAGTTCAAGATCCTGTTGTAACACTTTGTGGTCATCTCTTCTGTTGGCCTTGCATTTATAAATGGCTTCATTACAATAACTTATCTGCACAGCAACAATGCGAACCAGAGGAATGCCGTTGCCCCGTTTGCAAGGCCGAAGTCTCCCACACAACTCTCATCCCGCTCTACGGAGAATTCCAGACTAAAAATGCCTCCAAAGCTAAAGCACCATCAAATCTTGGCCCAACCATCCCTCGGAGGCCACTTGGCCGTGCCTGTGGAACAGAGGCACCAGCATCTCCAAGTCCCCGACTTCATCCTCACAACTATTCTCCTCAGTCACACTCATACTACTCACGAACACAAAACGACTACATCGCATCGTCGATGCTCAGCTCAAGCAGTATCACAACAAACATTATCCATCCAGTGATCGGAATGTTCGGTGACGCGATTTACGCAAGAACATTCGGAAACACAACAACAAACCTATACACTTATCCAAATTCATATGGTCATGTGAGCAACAGTAGTGTAAGGCTAAGGAGGCACATAATGCAGGCTGATGAATCACTAAGCAGAATCTGTTTCTTCCTTTTTTGCTGCTTAGTTATATGTCTTCTGTTATTCTAA

Protein sequence

MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPSNLGPTIPRRPLGRACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF

Homology

[Close]

BLAST of Clc02G18580 vs. NCBI nr
Match: XP_038901529.1 (E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida])

HSP 1 Score: 466.5 bits (1199), Expect = 1.5e-127
Identity = 224/252 (88.89%), Postives = 235/252 (93.25%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           ME QY+EETL+QNNNS  G+K CLDNQT +SD DDGASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEHQYVEETLIQNNNSLRGNKLCLDNQTCISDADDGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWL Y NLSAQQQC+  ECRCPVCKAEVSHTTL+P+YG+FQT N SKAKAPS
Sbjct: 61  LFCWPCIYKWLQYKNLSAQQQCQQAECRCPVCKAEVSHTTLVPIYGKFQTINPSKAKAPS 120

Query: 121 NLGPTIPRRPLGRACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITT 180
           NLGP IPRRPLGRACGTEAPASPSP+LHP NYSPQS+SYYSRTQN+YIASSMLSSSSITT
Sbjct: 121 NLGPAIPRRPLGRACGTEAPASPSPQLHPRNYSPQSNSYYSRTQNNYIASSMLSSSSITT 180

Query: 181 NIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFF 240
           NIIHPVIGMFGDAIY RTF NTT NLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFF
Sbjct: 181 NIIHPVIGMFGDAIYTRTFRNTTPNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFF 240

Query: 241 LFCCLVICLLLF 253
           LFCCLVICLLLF
Sbjct: 241 LFCCLVICLLLF 252

[Close]

BLAST of Clc02G18580 vs. NCBI nr
Match: XP_004139942.1 (E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031742415.1 E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >KGN46743.1 hypothetical protein Csa_020992 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 2.4e-117
Identity = 209/253 (82.61%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEETLMQN+NS GGD+ CLDNQ Y+SD +D ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLH   LSA Q+C+  ECRCPVCKA+VS  TL+P+YG+FQT +ASKA+AP 
Sbjct: 61  LFCWPCIYKWLHCKKLSA-QRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120

Query: 121 NLGPTIPRRPLGR-ACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSIT 180
           NLGP IPRRPLGR AC  E PASP+P+LH  NYSPQSHSYY++TQN+YIASSMLSSSSIT
Sbjct: 121 NLGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSIT 180

Query: 181 TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 240
           TNIIHPVIGMFGD IYARTFGNTTTNLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF
Sbjct: 181 TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICF 240

Query: 241 FLFCCLVICLLLF 253
           F FCCLVICLLLF
Sbjct: 241 FFFCCLVICLLLF 252

[Close]

BLAST of Clc02G18580 vs. NCBI nr
Match: XP_008448288.1 (PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_016900554.1 PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo])

HSP 1 Score: 425.2 bits (1092), Expect = 3.8e-115
Identity = 209/253 (82.61%), Postives = 224/253 (88.54%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQQYLEE LM N+NS GGDK  LD QTY+SD +D ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLH   LSA QQC+  ECRCPVCKA+VS  TLIP+YG+FQT +ASKAKAP 
Sbjct: 61  LFCWPCIYKWLHSKKLSA-QQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPP 120

Query: 121 NLGPTIPRRPLG-RACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSIT 180
           NLGP IPRRPLG  AC  E PASP+P+LH HNYSPQSHSYYS+TQN+YI+SSMLSSSSIT
Sbjct: 121 NLGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSIT 180

Query: 181 TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 240
           TNIIHPVIGMFGD IY RT GNTTTNLY+YPNSYG+VSNSSVRLRRHIMQADESLSRICF
Sbjct: 181 TNIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICF 240

Query: 241 FLFCCLVICLLLF 253
           F FCCLVICLLLF
Sbjct: 241 FFFCCLVICLLLF 252

[Close]

BLAST of Clc02G18580 vs. NCBI nr
Match: XP_022140292.1 (E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia])

HSP 1 Score: 414.1 bits (1063), Expect = 8.8e-112
Identity = 205/254 (80.71%), Postives = 221/254 (87.01%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQQYLEET+M+ +NSFG DKFCLDNQT VSD D GASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEETVMR-SNSFGEDKFCLDNQTCVSDADGGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLHY NLSAQQQC+P+E  CPVCKAEVSH +L+PLYG FQT N S+ KA S
Sbjct: 61  LFCWPCIYKWLHYKNLSAQQQCQPQENCCPVCKAEVSHASLVPLYGRFQTTNPSETKA-S 120

Query: 121 NLGPTIPRRPLGRACG-TEAPASPSPRLHPHN-YSPQSHSYYSRTQNDYIASSMLSSSSI 180
            LGP IPRRPLG ACG  EAPASPSP+LHPHN Y P +HSY+ RT  DYI SSML SSSI
Sbjct: 121 QLGPAIPRRPLGPACGAAEAPASPSPQLHPHNYYLPHAHSYHPRTTQDYITSSMLGSSSI 180

Query: 181 TTNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRIC 240
           TTNIIHPVIG FG+AIYAR FGNTTT+L+TYPNSYGHVSNSS RLRRH+MQADESLSRIC
Sbjct: 181 TTNIIHPVIGTFGEAIYARAFGNTTTSLHTYPNSYGHVSNSSARLRRHMMQADESLSRIC 240

Query: 241 FFLFCCLVICLLLF 253
           FF FCCLV+C L F
Sbjct: 241 FFFFCCLVLCFLSF 252

[Close]

BLAST of Clc02G18580 vs. NCBI nr
Match: XP_023513341.1 (E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.5 bits (981), Expect = 2.8e-102
Identity = 185/223 (82.96%), Postives = 197/223 (88.34%), Query Frame = 0


Query: 30  VSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRC 89
           V D D+G SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+HY +LS+QQQC+ EECRC
Sbjct: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66

Query: 90  PVCKAEVSHTTLIPLYGEFQTKNASKAKAPSNLGPTIPRRPLGRACGTEAPASPSPRLHP 149
           PVCKAEVSH TL+PLYG+FQT   SK K PSNLGP IPRRPLG ACG E PASPS +LH 
Sbjct: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSAQLHH 126

Query: 150 HNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTFGNTTTNLYTY 209
           HNYS QSH       +DYIASSMLSSSSITTNIIHPVIGMFGDA+Y RTFGNTTTNLYTY
Sbjct: 127 HNYS-QSH-------DDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTY 186

Query: 210 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV+CLLLF
Sbjct: 187 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot
Match: Q6R567 (E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-54
Identity = 112/225 (49.78%), Postives = 146/225 (64.89%), Query Frame = 0


Query: 34  DDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCK 93
           ++  S GFDCNICLD V +PV+TLCGHL+CWPCIYKW+++ ++S++   + ++ +CPVCK
Sbjct: 32  EENISGGFDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENS-DQQQPQCPVCK 91

Query: 94  AEVSHTTLIPLYGE-FQTKNASKAKAPSNLGPTIPRRPLGRACG-----TEAPASPSPRL 153
           AEVS  TLIPLYG   Q+   S+ KAP NLG  IP+RP    CG         ++PS  L
Sbjct: 92  AEVSEKTLIPLYGRGGQSTKPSEGKAP-NLGIVIPQRPPSPRCGGHFLLPTTDSNPSQLL 151

Query: 154 HPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTFGNTTTNLY 213
               Y  QS +     Q  Y++S MLS    T N++     M G+  YAR FGN++T +Y
Sbjct: 152 QRRGYQQQSQTRQPAYQGSYMSSPMLSPGGATANMLQH--SMIGEVAYARIFGNSSTTMY 211

Query: 214 TYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           TYPNSY    +SS R+RR + QAD SL RICFFLFCC V CL+LF
Sbjct: 212 TYPNSYNLAISSSPRMRRQLSQADRSLGRICFFLFCCFVTCLILF 252

[Close]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot
Match: O64425 (E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.8e-43
Identity = 103/266 (38.72%), Postives = 149/266 (56.02%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQ-----TYVSDGDDGASHGFDCNICLDSVQDPVV 60
           ++Q + +  L+     +G   FC  ++     T     DD     FDCNICLDSVQ+PVV
Sbjct: 3   LDQSFEDAALL--GELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVV 62

Query: 61  TLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASK 120
           TLCGHLFCWPCI+KWL   + S   + +    +CPVCK++VSH+TL+PLYG  +     +
Sbjct: 63  TLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVCKSKVSHSTLVPLYGRGRCTTQEE 122

Query: 121 AKAPSNLGPTIPRRPLGRACGTEAPASP--------SPRLHPHNYSPQSHSYYSRTQNDY 180
            K       ++P+RP+G     E P SP        S R+H          + S  +  Y
Sbjct: 123 GK------NSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVH----------FNSPQEGYY 182

Query: 181 IASSMLSSSSIT-TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRH 240
             S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP++Y     S  R+RR 
Sbjct: 183 PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRR 242

Query: 241 IMQADESLSRICFFLFCCLVICLLLF 253
           IMQAD+SL RI FF  CC+V+CLLLF
Sbjct: 243 IMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot
Match: Q8GUK7 (E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 3.7e-36
Identity = 91/233 (39.06%), Postives = 126/233 (54.08%), Query Frame = 0


Query: 33  GDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVC 92
           G    S  FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH    S     +  +  CPVC
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSV--SVDQHQNNCPVC 93

Query: 93  KAEVSHTTLIPLYGEFQTKNASK--AKAPSNLGPTIPRRPLGRACGTEAPASP------- 152
           K+ ++ T+L+PLYG   +  +S   +K    L   IPRRP   A      ++        
Sbjct: 94  KSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQ 153

Query: 153 ----SPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTF 212
               SP  H H YSP+    ++ T++  +A++++ S       ++PVIGMFGD +Y R F
Sbjct: 154 HQTLSPSFHNHQYSPRG---FTTTESTDLANAVMMS------FLYPVIGMFGDLVYTRIF 213

Query: 213 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           G T TN    P              + +MQ ++SL+R+  F  CC+++CLLLF
Sbjct: 214 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot
Match: P93030 (E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.1e-31
Identity = 88/233 (37.77%), Postives = 119/233 (51.07%), Query Frame = 0


Query: 25  DNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQ---- 84
           D+ T V  G D     FDCNICLD V+DPVVTLCGHLFCWPCI+KW + +N S Q+    
Sbjct: 8   DDTTLVDSGGD-----FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQY 67

Query: 85  QCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPSN-LGPTIPRRPLGRACGTEA 144
             + E  +CPVCK++VS  TL+P+YG  Q    S +  PS   GP    R +G+  G   
Sbjct: 68  DHKREPPKCPVCKSDVSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLG--- 127

Query: 145 PASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTF 204
                          +S  Y  R  +                   PV+G+  + +Y R F
Sbjct: 128 -------------EGESQRYMYRMPD-------------------PVMGVVCEMVYRRLF 187

Query: 205 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           G +++N+  Y        + +VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 188 GESSSNMAPY-------RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot
Match: Q568Y3 (E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.4e-16
Identity = 43/96 (44.79%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 15  NSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYN 74
           NS  G      N T  S G D     F+CNICLD+ +D V++LCGHLFCWPC+++WL   
Sbjct: 14  NSSAGGPSGSSNGTGESGGQDST---FECNICLDTAKDAVISLCGHLFCWPCLHQWL--- 73

Query: 75  NLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQT 111
                 +  P    CPVCKA +S   +IPLYG   T
Sbjct: 74  ------ETRPNRQVCPVCKAGISRDKVIPLYGRGST 97

[Close]

BLAST of Clc02G18580 vs. ExPASy TrEMBL
Match: A0A0A0KB39 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.2e-117
Identity = 209/253 (82.61%), Postives = 229/253 (90.51%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQ+YLEETLMQN+NS GGD+ CLDNQ Y+SD +D ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQEYLEETLMQNDNSLGGDRLCLDNQIYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLH   LSA Q+C+  ECRCPVCKA+VS  TL+P+YG+FQT +ASKA+AP 
Sbjct: 61  LFCWPCIYKWLHCKKLSA-QRCQQVECRCPVCKAKVSRATLVPIYGKFQTTDASKAEAPP 120

Query: 121 NLGPTIPRRPLGR-ACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSIT 180
           NLGP IPRRPLGR AC  E PASP+P+LH  NYSPQSHSYY++TQN+YIASSMLSSSSIT
Sbjct: 121 NLGPAIPRRPLGRHACEAETPASPTPQLHSDNYSPQSHSYYAQTQNEYIASSMLSSSSIT 180

Query: 181 TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 240
           TNIIHPVIGMFGD IYARTFGNTTTNLYTYPNSYG+V+NSSVRLRRHIMQADESLSRICF
Sbjct: 181 TNIIHPVIGMFGDTIYARTFGNTTTNLYTYPNSYGNVNNSSVRLRRHIMQADESLSRICF 240

Query: 241 FLFCCLVICLLLF 253
           F FCCLVICLLLF
Sbjct: 241 FFFCCLVICLLLF 252

[Close]

BLAST of Clc02G18580 vs. ExPASy TrEMBL
Match: A0A1S3BJB6 (E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 1.8e-115
Identity = 209/253 (82.61%), Postives = 224/253 (88.54%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQQYLEE LM N+NS GGDK  LD QTY+SD +D ASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEEALMPNDNSLGGDKLRLDIQTYISDAEDEASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLH   LSA QQC+  ECRCPVCKA+VS  TLIP+YG+FQT +ASKAKAP 
Sbjct: 61  LFCWPCIYKWLHSKKLSA-QQCQQVECRCPVCKAKVSRATLIPIYGKFQTTDASKAKAPP 120

Query: 121 NLGPTIPRRPLG-RACGTEAPASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSIT 180
           NLGP IPRRPLG  AC  E PASP+P+LH HNYSPQSHSYYS+TQN+YI+SSMLSSSSIT
Sbjct: 121 NLGPAIPRRPLGWHACEAETPASPTPQLHSHNYSPQSHSYYSQTQNEYISSSMLSSSSIT 180

Query: 181 TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICF 240
           TNIIHPVIGMFGD IY RT GNTTTNLY+YPNSYG+VSNSSVRLRRHIMQADESLSRICF
Sbjct: 181 TNIIHPVIGMFGDTIYPRTLGNTTTNLYSYPNSYGNVSNSSVRLRRHIMQADESLSRICF 240

Query: 241 FLFCCLVICLLLF 253
           F FCCLVICLLLF
Sbjct: 241 FFFCCLVICLLLF 252

[Close]

BLAST of Clc02G18580 vs. ExPASy TrEMBL
Match: A0A6J1CHP4 (E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111010997 PE=4 SV=1)

HSP 1 Score: 414.1 bits (1063), Expect = 4.3e-112
Identity = 205/254 (80.71%), Postives = 221/254 (87.01%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGH 60
           MEQQYLEET+M+ +NSFG DKFCLDNQT VSD D GASHGFDCNICLDSVQDPVVTLCGH
Sbjct: 1   MEQQYLEETVMR-SNSFGEDKFCLDNQTCVSDADGGASHGFDCNICLDSVQDPVVTLCGH 60

Query: 61  LFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPS 120
           LFCWPCIYKWLHY NLSAQQQC+P+E  CPVCKAEVSH +L+PLYG FQT N S+ KA S
Sbjct: 61  LFCWPCIYKWLHYKNLSAQQQCQPQENCCPVCKAEVSHASLVPLYGRFQTTNPSETKA-S 120

Query: 121 NLGPTIPRRPLGRACG-TEAPASPSPRLHPHN-YSPQSHSYYSRTQNDYIASSMLSSSSI 180
            LGP IPRRPLG ACG  EAPASPSP+LHPHN Y P +HSY+ RT  DYI SSML SSSI
Sbjct: 121 QLGPAIPRRPLGPACGAAEAPASPSPQLHPHNYYLPHAHSYHPRTTQDYITSSMLGSSSI 180

Query: 181 TTNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRIC 240
           TTNIIHPVIG FG+AIYAR FGNTTT+L+TYPNSYGHVSNSS RLRRH+MQADESLSRIC
Sbjct: 181 TTNIIHPVIGTFGEAIYARAFGNTTTSLHTYPNSYGHVSNSSARLRRHMMQADESLSRIC 240

Query: 241 FFLFCCLVICLLLF 253
           FF FCCLV+C L F
Sbjct: 241 FFFFCCLVLCFLSF 252

[Close]

BLAST of Clc02G18580 vs. ExPASy TrEMBL
Match: A0A6J1FXR1 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC111448157 PE=4 SV=1)

HSP 1 Score: 378.6 bits (971), Expect = 2.0e-101
Identity = 183/223 (82.06%), Postives = 197/223 (88.34%), Query Frame = 0


Query: 30  VSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRC 89
           V + D+G SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+HY +LS+QQQC+ EECRC
Sbjct: 7   VPEADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66

Query: 90  PVCKAEVSHTTLIPLYGEFQTKNASKAKAPSNLGPTIPRRPLGRACGTEAPASPSPRLHP 149
           PVCKAEVSH TL+PLYG+FQT   SK K PSNLGP IPRRPLG ACG E PASPS +LH 
Sbjct: 67  PVCKAEVSHATLVPLYGKFQTTPPSKTKPPSNLGPAIPRRPLGPACGGEPPASPSAQLHH 126

Query: 150 HNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTFGNTTTNLYTY 209
           HNYS QSH       +DYIASSMLSSSSITTNIIHPVIGMFGDA+Y RTFGNTT+NLYTY
Sbjct: 127 HNYS-QSH-------DDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTSNLYTY 186

Query: 210 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV+CLLLF
Sbjct: 187 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVLCLLLF 221

[Close]

BLAST of Clc02G18580 vs. ExPASy TrEMBL
Match: A0A6J1J9X8 (E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111483889 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.8e-101
Identity = 183/221 (82.81%), Postives = 193/221 (87.33%), Query Frame = 0


Query: 30  VSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRC 89
           V D D+G SHGF+CNICLDSVQDPVVTLCGHLFCWPCIYKW+HY +LS+QQQC+ EECRC
Sbjct: 7   VPDADEGVSHGFECNICLDSVQDPVVTLCGHLFCWPCIYKWIHYKSLSSQQQCQQEECRC 66

Query: 90  PVCKAEVSHTTLIPLYGEFQTKNASKAKAPSNLGPTIPRRPLGRACGTEAPASPSPRLHP 149
           PVCKAEVSH TL+PLYG+FQT   SK K PSNLGP IPRRPLG ACG E PASPS +LH 
Sbjct: 67  PVCKAEVSHATLVPLYGKFQTTAPSKTKPPSNLGPAIPRRPLGPACGAEPPASPSSQLHH 126

Query: 150 HNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTFGNTTTNLYTY 209
           HNYS QSH       NDYIASSMLSSSSITTNIIHPVIGMFGDA+Y RTFGNTTTNLYTY
Sbjct: 127 HNYS-QSH-------NDYIASSMLSSSSITTNIIHPVIGMFGDAVYTRTFGNTTTNLYTY 186

Query: 210 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLL 251
           PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLV  LL
Sbjct: 187 PNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVFLLL 219

[Close]

BLAST of Clc02G18580 vs. TAIR 10
Match: AT4G03510.1 (RING membrane-anchor 1 )

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 103/266 (38.72%), Postives = 149/266 (56.02%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQ-----TYVSDGDDGASHGFDCNICLDSVQDPVV 60
           ++Q + +  L+     +G   FC  ++     T     DD     FDCNICLDSVQ+PVV
Sbjct: 3   LDQSFEDAALL--GELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVV 62

Query: 61  TLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASK 120
           TLCGHLFCWPCI+KWL   + S   + +    +CPVCK++VSH+TL+PLYG  +     +
Sbjct: 63  TLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVCKSKVSHSTLVPLYGRGRCTTQEE 122

Query: 121 AKAPSNLGPTIPRRPLGRACGTEAPASP--------SPRLHPHNYSPQSHSYYSRTQNDY 180
            K       ++P+RP+G     E P SP        S R+H          + S  +  Y
Sbjct: 123 GK------NSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVH----------FNSPQEGYY 182

Query: 181 IASSMLSSSSIT-TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRH 240
             S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP++Y     S  R+RR 
Sbjct: 183 PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRR 242

Query: 241 IMQADESLSRICFFLFCCLVICLLLF 253
           IMQAD+SL RI FF  CC+V+CLLLF
Sbjct: 243 IMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc02G18580 vs. TAIR 10
Match: AT4G03510.2 (RING membrane-anchor 1 )

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-44
Identity = 103/266 (38.72%), Postives = 149/266 (56.02%), Query Frame = 0


Query: 1   MEQQYLEETLMQNNNSFGGDKFCLDNQ-----TYVSDGDDGASHGFDCNICLDSVQDPVV 60
           ++Q + +  L+     +G   FC  ++     T     DD     FDCNICLDSVQ+PVV
Sbjct: 3   LDQSFEDAALL--GELYGEGAFCFKSKKPEPITVSVPSDDTDDSNFDCNICLDSVQEPVV 62

Query: 61  TLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASK 120
           TLCGHLFCWPCI+KWL   + S   + +    +CPVCK++VSH+TL+PLYG  +     +
Sbjct: 63  TLCGHLFCWPCIHKWLDVQSFSTSDEYQRHR-QCPVCKSKVSHSTLVPLYGRGRCTTQEE 122

Query: 121 AKAPSNLGPTIPRRPLGRACGTEAPASP--------SPRLHPHNYSPQSHSYYSRTQNDY 180
            K       ++P+RP+G     E P SP        S R+H          + S  +  Y
Sbjct: 123 GK------NSVPKRPVGPVYRLEMPNSPYASTDLRLSQRVH----------FNSPQEGYY 182

Query: 181 IASSMLSSSSIT-TNIIHPVIGMFGDAIYARTFGNTTTNLYTYPNSYGHVSNSSVRLRRH 240
             S ++SS+S++ + ++ PV+ M G+ +  R FG    + + YP++Y     S  R+RR 
Sbjct: 183 PVSGVMSSNSLSYSAVLDPVMVMVGEMVATRLFGTRVMDRFAYPDTYNLAGTSGPRMRRR 242

Query: 241 IMQADESLSRICFFLFCCLVICLLLF 253
           IMQAD+SL RI FF  CC+V+CLLLF
Sbjct: 243 IMQADKSLGRIFFFFMCCVVLCLLLF 249

[Close]

BLAST of Clc02G18580 vs. TAIR 10
Match: AT4G27470.1 (RING membrane-anchor 3 )

HSP 1 Score: 153.3 bits (386), Expect = 2.6e-37
Identity = 91/233 (39.06%), Postives = 126/233 (54.08%), Query Frame = 0


Query: 33  GDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRCPVC 92
           G    S  FDCNICLD+  DPVVTLCGHLFCWPCIYKWLH    S     +  +  CPVC
Sbjct: 34  GQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHVQLSSV--SVDQHQNNCPVC 93

Query: 93  KAEVSHTTLIPLYGEFQTKNASK--AKAPSNLGPTIPRRPLGRACGTEAPASP------- 152
           K+ ++ T+L+PLYG   +  +S   +K    L   IPRRP   A      ++        
Sbjct: 94  KSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRPAPSALRNPITSASSLNPSLQ 153

Query: 153 ----SPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTF 212
               SP  H H YSP+    ++ T++  +A++++ S       ++PVIGMFGD +Y R F
Sbjct: 154 HQTLSPSFHNHQYSPRG---FTTTESTDLANAVMMS------FLYPVIGMFGDLVYTRIF 213

Query: 213 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           G T TN    P              + +MQ ++SL+R+  F  CC+++CLLLF
Sbjct: 214 G-TFTNTIAQPYQ-----------SQRMMQREKSLNRVSIFFLCCIILCLLLF 243

[Close]

BLAST of Clc02G18580 vs. TAIR 10
Match: AT4G28270.1 (RING membrane-anchor 2 )

HSP 1 Score: 137.5 bits (345), Expect = 1.5e-32
Identity = 88/233 (37.77%), Postives = 119/233 (51.07%), Query Frame = 0


Query: 25  DNQTYVSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQ---- 84
           D+ T V  G D     FDCNICLD V+DPVVTLCGHLFCWPCI+KW + +N S Q+    
Sbjct: 8   DDTTLVDSGGD-----FDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQY 67

Query: 85  QCEPEECRCPVCKAEVSHTTLIPLYGEFQTKNASKAKAPSN-LGPTIPRRPLGRACGTEA 144
             + E  +CPVCK++VS  TL+P+YG  Q    S +  PS   GP    R +G+  G   
Sbjct: 68  DHKREPPKCPVCKSDVSEATLVPIYGRGQKAPQSGSNVPSRPTGPVYDLRGVGQRLG--- 127

Query: 145 PASPSPRLHPHNYSPQSHSYYSRTQNDYIASSMLSSSSITTNIIHPVIGMFGDAIYARTF 204
                          +S  Y  R  +                   PV+G+  + +Y R F
Sbjct: 128 -------------EGESQRYMYRMPD-------------------PVMGVVCEMVYRRLF 187

Query: 205 GNTTTNLYTYPNSYGHVSNSSVRLRRHIMQADESLSRICFFLFCCLVICLLLF 253
           G +++N+  Y        + +VR RR  MQA+ESLSR+  FL C + +CL LF
Sbjct: 188 GESSSNMAPY-------RDMNVRSRRRAMQAEESLSRVYLFLLCFMFMCLFLF 193

[Close]

BLAST of Clc02G18580 vs. TAIR 10
Match: AT1G74990.1 (RING/U-box superfamily protein )

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-25
Identity = 52/111 (46.85%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 30  VSDGDDGASHGFDCNICLDSVQDPVVTLCGHLFCWPCIYKWLHYNNLSAQQQCEPEECRC 89
           +++ +D AS+ F CNICL+  ++P+VTLCGHLFCWPC+YKWLHY++ S           C
Sbjct: 6   ITNEEDDASNNFGCNICLELAREPIVTLCGHLFCWPCLYKWLHYHSKSN---------HC 65

Query: 90  PVCKAEVSHTTLIPLYGEFQTKNASKAKAPSNLGPTIPRRPLGRACGTEAP 141
           PVCKA V   TL+PLYG    K +S  ++  N G T+P RP      T  P
Sbjct: 66  PVCKALVKEDTLVPLYG--MGKPSSDPRSKLNSGVTVPNRPAATRTETARP 105

The following BLAST results are available for this feature:

BLAST of Clc02G18580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901529.1	1.5e-127	88.89	E3 ubiquitin-protein ligase RMA1H1-like [Benincasa hispida]	[more]
XP_004139942.1	2.4e-117	82.61	E3 ubiquitin-protein ligase RMA1H1 [Cucumis sativus] >XP_031742415.1 E3 ubiquiti...	[more]
XP_008448288.1	3.8e-115	82.61	PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Cucumis melo] >XP_008448289.1 PRE...	[more]
XP_022140292.1	8.8e-112	80.71	E3 ubiquitin-protein ligase RMA1H1-like [Momordica charantia] >XP_022140293.1 E3...	[more]
XP_023513341.1	2.8e-102	82.96	E3 ubiquitin-protein ligase RMA1H1-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc02G18580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6R567	2.3e-54	49.78	E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=...	[more]
O64425	1.8e-43	38.72	E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana OX=3702 GN=RMA1 PE=1 SV...	[more]
Q8GUK7	3.7e-36	39.06	E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana OX=3702 GN=RMA3 PE=1 SV...	[more]
P93030	2.1e-31	37.77	E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana OX=3702 GN=RMA2 PE=1 SV...	[more]
Q568Y3	1.4e-16	44.79	E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus OX=10116 GN=Rnf185 PE=2 ...	[more]

BLAST of Clc02G18580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KB39	1.2e-117	82.61	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G128040 P...	[more]
A0A1S3BJB6	1.8e-115	82.61	E3 ubiquitin-protein ligase RMA1H1 OS=Cucumis melo OX=3656 GN=LOC103490524 PE=4 ...	[more]
A0A6J1CHP4	4.3e-112	80.71	E3 ubiquitin-protein ligase RMA1H1-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FXR1	2.0e-101	82.06	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J9X8	5.8e-101	82.81	E3 ubiquitin-protein ligase RMA1H1-like OS=Cucurbita maxima OX=3661 GN=LOC111483...	[more]

BLAST of Clc02G18580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03510.1	1.3e-44	38.72	RING membrane-anchor 1	[more]
AT4G03510.2	1.3e-44	38.72	RING membrane-anchor 1	[more]
AT4G27470.1	2.6e-37	39.06	RING membrane-anchor 3	[more]
AT4G28270.1	1.5e-32	37.77	RING membrane-anchor 2	[more]
AT1G74990.1	5.1e-25	46.85	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 43..92 e-value: 3.2E-8 score: 43.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 43..93 score: 12.681067
None	No IPR available	PFAM	PF13923	zf-C3HC4_2	coord: 43..75 e-value: 3.1E-9 score: 36.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..152
None	No IPR available	PANTHER	PTHR12313:SF75	SUBFAMILY NOT NAMED	coord: 1..252
None	No IPR available	CDD	cd16745	RING-HC_AtRMA_like	coord: 41..94 e-value: 1.62228E-23 score: 87.7448
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 39..105
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 24..125 e-value: 4.0E-17 score: 64.1
IPR045103	E3 ubiquitin-protein ligase RNF5/RNF185-like	PANTHER	PTHR12313	E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED	coord: 1..252
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 58..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18580.1	Clc02G18580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071712	ER-associated misfolded protein catabolic process
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0044390	ubiquitin-like protein conjugating enzyme binding
molecular_function	GO:0061630	ubiquitin protein ligase activity