Clc02G18470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Epidermal patterning factor-like protein
Location	ClcChr02: 31041407 .. 31042175 (-)
RNA-Seq Expression	Clc02G18470
Synteny	Clc02G18470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAACTTACATCCGATTTCATGTCTATGGAACAATAACTCTGATGCAGAGTAGTATTTCTTCAAAATGAACCCACATTCTCTCATGCAACCCCAATATTATTATTCCATTGAACCACAAGAAATTCGAGTTTTGCAATCAAAACCCCCCACACCATCTTCTTCCTTCTTCATGTGATTCTCTCCAATAAACAAATTAACTAATCCACTTCCATCATCCATCCTTTCCTGTGATTTGCTTCAATTCAATATGCATATTTCACCCTCCCCTTCTTTATATATTCCCCTTATATGCTTCTTCATCCTCTCATTTTCACCAACTCACTTGGGATTATAATTTCCAAAAATATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCGTACCTATCTTTTCTTTTTCCAAACATTATTATTATAAAGACAACATTTAAATTGCATTTTTAAACAAACCCATATCACAAAATTGATTCTATTTTTATTATGCAGATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGATTTAATTTCATTTTTTT

mRNA sequence

GGAACTTACATCCGATTTCATGTCTATGGAACAATAACTCTGATGCAGAGTAGTATTTCTTCAAAATGAACCCACATTCTCTCATGCAACCCCAATATTATTATTCCATTGAACCACAAGAAATTCGAGTTTTGCAATCAAAACCCCCCACACCATCTTCTTCCTTCTTCATGTGATTCTCTCCAATAAACAAATTAACTAATCCACTTCCATCATCCATCCTTTCCTGTGATTTGCTTCAATTCAATATGCATATTTCACCCTCCCCTTCTTTATATATTCCCCTTATATGCTTCTTCATCCTCTCATTTTCACCAACTCACTTGGGATTATAATTTCCAAAAATATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGATTTAATTTCATTTTTTT

Coding sequence (CDS)

ATGCTTCTTCATCCTCTCATTTTCACCAACTCACTTGGGATTATAATTTCCAAAAATATGAAATCCACAAAGGCTTTACTACTTCTGGTCGCTGCTGTACTCCTGATCCTCCTAGTCGCACCAGCCATGCCCGCCAGACAACTCTCAACTCATAACAATAATAGTCGCAAGCGAATGAGAGGAGAGACGGTGGAAATTGCAGGATCGAGGTTACCAGATTGTTCTCACGCTTGTGGGTCGTGCTCCCCATGCAGGCTCGTGATGGTTAGGTTCTTTTGTGCTTCGGTTGAAGACTCAGAGGCTTGCCCCTTGGCTTACAAGTGCATGTGCAGCCATAAATCCTTTCCTGTTCCATGA

Protein sequence

MLLHPLIFTNSLGIIISKNMKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP

Homology

[Close]

BLAST of Clc02G18470 vs. NCBI nr
Match: KAG7034925.1 (Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.4 bits (381), Expect = 5.0e-33
Identity = 75/100 (75.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAP-AMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHAC 79
           M  TKA +L+VA +L+++L  P AMPAR L  H  NS KR+RGETVE+AGSRLPDCSHAC
Sbjct: 1   MTPTKASILVVAVLLIVILQVPTAMPARHLPPH--NSPKRVRGETVEVAGSRLPDCSHAC 60

Query: 80  GSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           GSC+PCRLVMVR+FC+SVEDSE CPLAYKCMCSHKSFPVP
Sbjct: 61  GSCAPCRLVMVRYFCSSVEDSETCPLAYKCMCSHKSFPVP 98

[Close]

BLAST of Clc02G18470 vs. NCBI nr
Match: XP_006409026.2 (protein EPIDERMAL PATTERNING FACTOR 1 [Eutrema salsugineum])

HSP 1 Score: 115.2 bits (287), Expect = 4.0e-22
Identity = 60/127 (47.24%), Postives = 83/127 (65.35%), Query Frame = 0


Query: 1   MLLHPLIFTNSLGIIISKNMKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNS----- 60
           +LLHP    +S  I+   +MKS   L+L ++  L  L      P     +H++       
Sbjct: 19  ILLHPNSQFSSFTILTISHMKSLLVLVLFLSFFLCSLFATRHFPKPPYPSHHHVGMTSTT 78

Query: 61  ----RKRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCS 119
               +++ R +TV++AGSRLPDCSHACGSCSPCRLVMV F CAS+E++E CP+AYKCMC+
Sbjct: 79  GTLLKRQRRPDTVQVAGSRLPDCSHACGSCSPCRLVMVSFVCASLEEAETCPMAYKCMCN 138

[Close]

BLAST of Clc02G18470 vs. NCBI nr
Match: XP_009117463.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa] >XP_013664293.1 protein EPIDERMAL PATTERNING FACTOR 1 [Brassica napus] >RID48142.1 hypothetical protein BRARA_I04679 [Brassica rapa] >CAF2050050.1 unnamed protein product [Brassica napus] >CAG7866665.1 unnamed protein product [Brassica rapa] >CDY13853.1 BnaA09g43550D [Brassica napus] >VDC63642.1 unnamed protein product [Brassica rapa])

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNN---SRKRMRGETVEIAGSRLPDCSH 79
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 80  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

[Close]

BLAST of Clc02G18470 vs. NCBI nr
Match: XP_022140689.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 18  KNMKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHA 77
           K+MK      ++V  V++ LLV     AR ++      R   RGETV+IAGSRLPDCSHA
Sbjct: 2   KSMKRASIDHVVVVLVIVGLLVQTVTSARHITRSGKGIR---RGETVKIAGSRLPDCSHA 61

Query: 78  CGSCSPCRLVMVRFFC-ASVEDSEACPLAYKCMCSHKSFPVP 119
           CG CSPCRLVMVR+ C A+VEDSE CP AYKCMC+ KSFPVP
Sbjct: 62  CGWCSPCRLVMVRYICGAAVEDSETCPTAYKCMCTFKSFPVP 100

[Close]

BLAST of Clc02G18470 vs. NCBI nr
Match: XP_031106759.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Ipomoea triloba])

HSP 1 Score: 113.2 bits (282), Expect = 1.5e-21
Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAP-AMPARQLSTHNNNSR-------------------KRM 79
           MK   A LL    ++++LL +P AMPAR++   N N R                    + 
Sbjct: 2   MKGCAATLL----IIILLLFSPFAMPARRIGKFNPNERHGGEESSAAAQLGRKTTMMMQK 61

Query: 80  RGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           RG+T+EIAGSRLPDCSHACGSC PCRLVMV F C+++E++E CP+AYKCMC +KS+P+P
Sbjct: 62  RGDTLEIAGSRLPDCSHACGSCHPCRLVMVSFVCSTLEEAETCPMAYKCMCHNKSYPIP 116

[Close]

BLAST of Clc02G18470 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.3e-23
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 24  KALLLLVAAVLLIL--LVAPAMPARQLSTHNN------NSRKRMRGETVEIAGSRLPDCS 83
           K+LLLL   +      L+A  +P     +H++        R+R R +TV++AGSRLPDCS
Sbjct: 2   KSLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCS 61

Query: 84  HACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           HACGSCSPCRLVMV F CASVE++E CP+AYKCMC++KS+PVP
Sbjct: 62  HACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of Clc02G18470 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 67  AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           +GS +PDCS+ACG C PC+LV++   C++   SEACPL YKC+C  K + VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of Clc02G18470 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-09
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 47  QLSTHNNNSRKRMRGETVEI--AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPL 106
           Q  TH+     +  G  +E+   GS LPDCS+ACG+CSPC+ VM+ F C+    +E+C +
Sbjct: 47  QAQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSV 106

Query: 107 AYKCMCSHKSFPVP 119
            Y+C C  + + VP
Sbjct: 107 IYRCTCRGRYYHVP 117

[Close]

BLAST of Clc02G18470 vs. ExPASy TrEMBL
Match: A0A397Y3J3 (Epidermal patterning factor-like protein OS=Brassica campestris OX=3711 GN=BRAA09T41253Z PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNN---SRKRMRGETVEIAGSRLPDCSH 79
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 80  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

[Close]

BLAST of Clc02G18470 vs. ExPASy TrEMBL
Match: M4EQS2 (Epidermal patterning factor-like protein OS=Brassica rapa subsp. pekinensis OX=51351 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNN---SRKRMRGETVEIAGSRLPDCSH 79
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 80  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

[Close]

BLAST of Clc02G18470 vs. ExPASy TrEMBL
Match: A0A078FNB7 (Epidermal patterning factor-like protein OS=Brassica napus OX=3708 GN=BnaA09g43550D PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 3.3e-22
Identity = 54/102 (52.94%), Postives = 74/102 (72.55%), Query Frame = 0


Query: 20  MKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNN---SRKRMRGETVEIAGSRLPDCSH 79
           MKS   L+L ++  +  +  +   P     +HNN+    +++ R +TV++AGSRLPDCSH
Sbjct: 1   MKSFLLLVLFLSFFVGSIFASRHFPTHPYPSHNNHHVGMKRQRRPDTVQVAGSRLPDCSH 60

Query: 80  ACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           ACGSCSPCRLVMV F CAS+E++E CP+AYKCMC +KS+PVP
Sbjct: 61  ACGSCSPCRLVMVSFVCASIEEAETCPMAYKCMCKNKSYPVP 102

[Close]

BLAST of Clc02G18470 vs. ExPASy TrEMBL
Match: A0A6J1CGD5 (Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC111011291 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 61/102 (59.80%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 18  KNMKSTKALLLLVAAVLLILLVAPAMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHA 77
           K+MK      ++V  V++ LLV     AR ++      R   RGETV+IAGSRLPDCSHA
Sbjct: 2   KSMKRASIDHVVVVLVIVGLLVQTVTSARHITRSGKGIR---RGETVKIAGSRLPDCSHA 61

Query: 78  CGSCSPCRLVMVRFFC-ASVEDSEACPLAYKCMCSHKSFPVP 119
           CG CSPCRLVMVR+ C A+VEDSE CP AYKCMC+ KSFPVP
Sbjct: 62  CGWCSPCRLVMVRYICGAAVEDSETCPTAYKCMCTFKSFPVP 100

[Close]

BLAST of Clc02G18470 vs. ExPASy TrEMBL
Match: A0A7I8JFV2 (Epidermal patterning factor-like protein OS=Spirodela intermedia OX=51605 GN=SI7747_11015205 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 50/77 (64.94%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 42  AMPARQLSTHNNNSRKRMRGETVEIAGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEA 101
           A P+ + +T     R R   ETV+IAGS LPDCSHACGSCSPCRLVMV F CAS+E++E 
Sbjct: 48  AGPSEERTTEGWTQRGRSGPETVQIAGSSLPDCSHACGSCSPCRLVMVSFVCASLEEAET 107

Query: 102 CPLAYKCMCSHKSFPVP 119
           CP+AYKCMC+ KS+PVP
Sbjct: 108 CPMAYKCMCNSKSYPVP 124

[Close]

BLAST of Clc02G18470 vs. TAIR 10
Match: AT2G20875.1 (epidermal patterning factor 1 )

HSP 1 Score: 110.5 bits (275), Expect = 9.1e-25
Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 0


Query: 24  KALLLLVAAVLLIL--LVAPAMPARQLSTHNN------NSRKRMRGETVEIAGSRLPDCS 83
           K+LLLL   +      L+A  +P     +H++        R+R R +TV++AGSRLPDCS
Sbjct: 2   KSLLLLAFFLSFFFGSLLARHLPTSSHPSHHHVGMTGALKRQRRRPDTVQVAGSRLPDCS 61

Query: 84  HACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           HACGSCSPCRLVMV F CASVE++E CP+AYKCMC++KS+PVP
Sbjct: 62  HACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

[Close]

BLAST of Clc02G18470 vs. TAIR 10
Match: AT1G71866.1 (LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT1G34245.1). )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 67  AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPLAYKCMCSHKSFPVP 119
           +GS +PDCS+ACG C PC+LV++   C++   SEACPL YKC+C  K + VP
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSA---SEACPLVYKCLCKGKYYHVP 169

[Close]

BLAST of Clc02G18470 vs. TAIR 10
Match: AT1G34245.1 (Putative membrane lipoprotein )

HSP 1 Score: 63.9 bits (154), Expect = 9.7e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 0


Query: 47  QLSTHNNNSRKRMRGETVEI--AGSRLPDCSHACGSCSPCRLVMVRFFCASVEDSEACPL 106
           Q  TH+     +  G  +E+   GS LPDCS+ACG+CSPC+ VM+ F C+    +E+C +
Sbjct: 47  QAQTHHKKEISKNGGVEMEMYPTGSSLPDCSYACGACSPCKRVMISFECSV---AESCSV 106

Query: 107 AYKCMCSHKSFPVP 119
            Y+C C  + + VP
Sbjct: 107 IYRCTCRGRYYHVP 117

The following BLAST results are available for this feature:

BLAST of Clc02G18470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7034925.1	5.0e-33	75.00	Protein EPIDERMAL PATTERNING FACTOR 1, partial [Cucurbita argyrosperma subsp. ar...	[more]
XP_006409026.2	4.0e-22	47.24	protein EPIDERMAL PATTERNING FACTOR 1 [Eutrema salsugineum]	[more]
XP_009117463.1	6.7e-22	52.94	protein EPIDERMAL PATTERNING FACTOR 1 [Brassica rapa] >XP_013664293.1 protein EP...	[more]
XP_022140689.1	1.1e-21	59.80	protein EPIDERMAL PATTERNING FACTOR 1-like [Momordica charantia]	[more]
XP_031106759.1	1.5e-21	49.58	protein EPIDERMAL PATTERNING FACTOR 1 [Ipomoea triloba]	[more]

BLAST of Clc02G18470 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S8I4	1.3e-23	55.34	Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE...	[more]
C4B8C5	2.1e-10	53.85	EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP...	[more]
Q8LC53	1.4e-09	40.54	Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE...	[more]

BLAST of Clc02G18470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A397Y3J3	3.3e-22	52.94	Epidermal patterning factor-like protein OS=Brassica campestris OX=3711 GN=BRAA0...	[more]
M4EQS2	3.3e-22	52.94	Epidermal patterning factor-like protein OS=Brassica rapa subsp. pekinensis OX=5...	[more]
A0A078FNB7	3.3e-22	52.94	Epidermal patterning factor-like protein OS=Brassica napus OX=3708 GN=BnaA09g435...	[more]
A0A6J1CGD5	5.6e-22	59.80	Epidermal patterning factor-like protein OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A7I8JFV2	2.1e-21	64.94	Epidermal patterning factor-like protein OS=Spirodela intermedia OX=51605 GN=SI7...	[more]

BLAST of Clc02G18470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20875.1	9.1e-25	55.34	epidermal patterning factor 1	[more]
AT1G71866.1	1.5e-11	53.85	LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Put...	[more]
AT1G34245.1	9.7e-11	40.54	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 67..116 e-value: 7.1E-15 score: 54.7
None	No IPR available	PANTHER	PTHR33109:SF41	PROTEIN EPIDERMAL PATTERNING FACTOR 1	coord: 47..118
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 47..118

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18470.2	Clc02G18470.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010052	guard cell differentiation
biological_process	GO:2000122	negative regulation of stomatal complex development
biological_process	GO:0010375	stomatal complex patterning
biological_process	GO:0010374	stomatal complex development
cellular_component	GO:0005576	extracellular region