Clc02G18380 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18380
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	H/ACA ribonucleoprotein complex non-core subunit NAF1
Location	ClcChr02: 30902615 .. 30906091 (-)
RNA-Seq Expression	Clc02G18380
Synteny	Clc02G18380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAATAAAAATAAGGAGCAAACCCTAAAAATAACTATTTGCCTCTTCACTCTCGCAGTCTCACGTGTTCCGCGCCTCTTTCTTCTTCCTCTTCTCGCCATCACCTCCTCTGTTTCTGCAGCTCAGTGGCGCCGCCGGCTCTCTCCCGCCGCTGTCGTCTTTCTTCCACTCTTGCCGTTGCTGCCGTCTTCTTTTTTAAGCTCATGCGGCTGTAACCTCCCTTGTTGTTACTCTGTTGTTGTCTGTCACTGGTATTCTCTCAATCTCCATCTGTCTTCCTTTCTCAATTGAAAAACATAAATTACCCAATACAATAACTTATCACACTTTGAATTTACTGGAAACAGCGGCCTATATGCTTTGTATTTCGAGATAATATCTAAAGTTGAGATTCTCCGTTTTAGCTGCATTTATATATAGTATAAATAGATATAGATATAGATATAGATGTTTACCCTTGCTCCCTCTCAATCAAGTCTCAATTTTGGAGCTCTCCAATGGTAGAGTTTGCTCCCAACTCCAACGCTGCGTCTGCCCCCGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACGCGGAGCCACTTGACTCTTTCGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGTTGATGCACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCGTTGTTGTCAGGTCTGAAGACTTTAAACCAGAAGTGCAGGCGAGTGAGGCTTGTAGTAAGTCTACAGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAAGTTAGCTTGGTTCTTGACGGTGGGTGCACTGCCAACGTTGAGTTGGAGTCTCAAGAGGATGATGGTGTAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAGAATTCATCGTCTTCCAGTAGTGGCGACAGCAATTGCGATGATGAAGAAGAGGAGTACATGGTAAAAGCAGAGGGACAGAGAGAAATTGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTAACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAAACTTCGATGGTGATGGTGATGGTGATGGTGAAGACTTCGAGGGAGAAGATGAAGAGGCTGGGGTTGAAGGAGGGCCAATTATTTCTAAAAATGAGCTTAAGGTTCGTTTTCTGTTTTCATCCTGATGCTTGCAAGTAGCCTTTTTGCATTTTCTATATGATTATATGGAGGCTGTATTGGATGCCCATGGTTGATGTTGCAATTAATTAATAATCTATACTGGTGCATTACTTCTTTTTGGCTTGGTTGCAGGTTCTTCCTCCAGTTCCTCAAGTGCACGCGTCACTGCAGCCGCACCACCAAATGCTTCCTGTTGGAGTTGTTTTGTCAGTAAGTACCTCGATTTTAATAGAATTAAGTGCTGCAATTCTTTCTTCGTTTTCCCTTTCCATGGTTTTCATTGTTTATTCAACTAAATGATCTTTAAGAGGCAGCCCTTTTGAGTATTCTTGTTATGCAATTTTACTCAAGTTGTTATTAATTTAATGTTCTGTTACTACTTTTCAGATAATAGGCAATCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAACGAAGGCTCTATCCTCTGGATAACTGAAGCTAGATCCCCATTGGGGTTGGTAGATGAGATCTTTGGACCGGTAAAAAATCCTTATTATTCTGTAAGGTACAATTCTGAAAGTGAAGTTCCTCATGGAATTAGTGGTGGCACTCACGTCTCCTTCGTTCTTGAGTTTGCCGATTATGTGCTAAATAACAAAGACCTGTACAAGAAGGGGTATGATGCATCCGGAGTGAATGATGAAGAGGTGTCAGATAATGATGAGTTCTCAGATGATGAGAAAGAGCTTGAGTTCAAGAAAATGCAAAAGTTGGCTAAGAGGGCTATGAATGACAACCAACAGATTAATGCCAACAGAAATAATGTTAGGAAGAAGAAAAACAATGCTAAAGCCAGGAAATTTGGTCAGCGTACATTTGAGACTGCAAATGTACCTGATGAGTCCAGGAAATTTTACCGCCAGCACACACCCGAGCAAGCAACAATACCTGAAGGCAGGAAATTTGATCAGCCAACACCACAGCAAGCAAAGATGGATATGGTTCAGCCATCCCCCAATCAAAACCAGCAGACGGGCCCTCCTTTGGCACCGTTTGTATATCACGGTGGTTGCCCAAACCCTTCAGTTGCAGAACAATGTTTTATCAATGGAACTGGTGTTATGCCATCTTTTCCACCAACGTACAACCCCTACTTTACACCAGCAATGAATGGAATTAGGCCCGCAGAAATGGCATTTCAGTTTCAGCAGCAGCAGCAGAATCCGTTCTTTCCCAACGGTCTTCCAATGAATGGCATGCCTTGGCTATTACAGAATCCTGCACAGCAATTGCCTCAAATGTCTATGCCGAATACATTTGCCGGAGCAGCGTATCCGCAAGGATTCGCAGGTCCATCATCTGCCCTACCTAATCTCTTGACAAGCGTAGGGGCACAAGCAATCCAATCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAACACAACAATTCAATCCCCCAAACTCGTGCCCACCATTTACATTTCCAGGAAACATATCACCACAACAGTTTAACCAAAACTCATCTTCAAACCAGGGAAGGAAATCTTATGGTCGCGGTCGTGGTGGACCTCATTTTAGAGGTAGAAGAGGTGGGCGACAAACTAGATGAACCTTTACTCATTCAGCTTCATGCTTATTTAGGAATTAGGATATAGGTTGTTTGCATATGTGCAATTACTACATTTTGATTGAAATCTGTCGTGTACCTTTCACTGATTTAGGTGGGATGAGAATTATTTAAGGGGCTAGTATCTTTTTTTTAATCGCTTGGTTGCTCAATGTCTGGCAGAAATTAAAGAACGTAGTTGCGGAAATGATTGTACTGCAAATTCCAAAATCAGTAGATAAAACTGTTGAATTCAAAGAGACAATACTGGGTGTTCAAGTAAAAACTTGTGGGTGGGAAAAGCCTCAAGCTTTTTGCATTCTTGTGAAGTCAACGCAGGCCTTGCGATTGGCTTTCTCGTCATCTTCATCGCATTTTATACAGTTGCTATGTCAAAGCTTTTGAAGAAAAACCACAAGAGATCATATTTTCTCATAGAAATTTTCAGCGGTACAAATTTCTGATTTTACACGTCTAGCAATGTTAATCACTACAATAAGTAACACTTTTCATAGTATTGTATAAAAATGACTATG

mRNA sequence

TGGAAATAAAAATAAGGAGCAAACCCTAAAAATAACTATTTGCCTCTTCACTCTCGCAGTCTCACGTGTTCCGCGCCTCTTTCTTCTTCCTCTTCTCGCCATCACCTCCTCTGTTTCTGCAGCTCAGTGGCGCCGCCGGCTCTCTCCCGCCGCTGTCGTCTTTCTTCCACTCTTGCCGTTGCTGCCGTCTTCTTTTTTAAGCTCATGCGGCTGTAACCTCCCTTGTTGTTACTCTGTTGTTGTCTGTCACTGTCTCAATTTTGGAGCTCTCCAATGGTAGAGTTTGCTCCCAACTCCAACGCTGCGTCTGCCCCCGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACGCGGAGCCACTTGACTCTTTCGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGTTGATGCACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCGTTGTTGTCAGGTCTGAAGACTTTAAACCAGAAGTGCAGGCGAGTGAGGCTTGTAGTAAGTCTACAGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAAGTTAGCTTGGTTCTTGACGGTGGGTGCACTGCCAACGTTGAGTTGGAGTCTCAAGAGGATGATGGTGTAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAGAATTCATCGTCTTCCAGTAGTGGCGACAGCAATTGCGATGATGAAGAAGAGGAGTACATGGTAAAAGCAGAGGGACAGAGAGAAATTGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTAACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAAACTTCGATGGTGATGGTGATGGTGATGGTGAAGACTTCGAGGGAGAAGATGAAGAGGCTGGGGTTGAAGGAGGGCCAATTATTTCTAAAAATGAGCTTAAGGTTCTTCCTCCAGTTCCTCAAGTGCACGCGTCACTGCAGCCGCACCACCAAATGCTTCCTGTTGGAGTTGTTTTGTCAATAATAGGCAATCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAACGAAGGCTCTATCCTCTGGATAACTGAAGCTAGATCCCCATTGGGGTTGGTAGATGAGATCTTTGGACCGGTAAAAAATCCTTATTATTCTGTAAGGTACAATTCTGAAAGTGAAGTTCCTCATGGAATTAGTGGTGGCACTCACGTCTCCTTCGTTCTTGAGTTTGCCGATTATGTGCTAAATAACAAAGACCTGTACAAGAAGGGGTATGATGCATCCGGAGTGAATGATGAAGAGGTGTCAGATAATGATGAGTTCTCAGATGATGAGAAAGAGCTTGAGTTCAAGAAAATGCAAAAGTTGGCTAAGAGGGCTATGAATGACAACCAACAGATTAATGCCAACAGAAATAATGTTAGGAAGAAGAAAAACAATGCTAAAGCCAGGAAATTTGGTCAGCGTACATTTGAGACTGCAAATGTACCTGATGAGTCCAGGAAATTTTACCGCCAGCACACACCCGAGCAAGCAACAATACCTGAAGGCAGGAAATTTGATCAGCCAACACCACAGCAAGCAAAGATGGATATGGTTCAGCCATCCCCCAATCAAAACCAGCAGACGGGCCCTCCTTTGGCACCGTTTGTATATCACGGTGGTTGCCCAAACCCTTCAGTTGCAGAACAATGTTTTATCAATGGAACTGGTGTTATGCCATCTTTTCCACCAACGTACAACCCCTACTTTACACCAGCAATGAATGGAATTAGGCCCGCAGAAATGGCATTTCAGTTTCAGCAGCAGCAGCAGAATCCGTTCTTTCCCAACGGTCTTCCAATGAATGGCATGCCTTGGCTATTACAGAATCCTGCACAGCAATTGCCTCAAATGTCTATGCCGAATACATTTGCCGGAGCAGCGTATCCGCAAGGATTCGCAGGTCCATCATCTGCCCTACCTAATCTCTTGACAAGCGTAGGGGCACAAGCAATCCAATCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAACACAACAATTCAATCCCCCAAACTCGTGCCCACCATTTACATTTCCAGGAAACATATCACCACAACAGTTTAACCAAAACTCATCTTCAAACCAGGGAAGGAAATCTTATGGTCGCGGTCGTGGTGGACCTCATTTTAGAGGTAGAAGAGGTGGGCGACAAACTAGATGAACCTTTACTCATTCAGCTTCATGCTTATTTAGGAATTAGGATATAGGTTGTTTGCATATGTGCAATTACTACATTTTGATTGAAATCTGTCGTGTACCTTTCACTGATTTAGGTGGGATGAGAATTATTTAAGGGGCTAGTATCTTTTTTTTAATCGCTTGGTTGCTCAATGTCTGGCAGAAATTAAAGAACGTAGTTGCGGAAATGATTGTACTGCAAATTCCAAAATCAGTAGATAAAACTGTTGAATTCAAAGAGACAATACTGGGTGTTCAAGTAAAAACTTGTGGGTGGGAAAAGCCTCAAGCTTTTTGCATTCTTGTGAAGTCAACGCAGGCCTTGCGATTGGCTTTCTCGTCATCTTCATCGCATTTTATACAGTTGCTATGTCAAAGCTTTTGAAGAAAAACCACAAGAGATCATATTTTCTCATAGAAATTTTCAGCGGTACAAATTTCTGATTTTACACGTCTAGCAATGTTAATCACTACAATAAGTAACACTTTTCATAGTATTGTATAAAAATGACTATG

Coding sequence (CDS)

ATGGTAGAGTTTGCTCCCAACTCCAACGCTGCGTCTGCCCCCGACGGCCTTCTTCACGCTTCTTCTAAGCTTAAGAACGCGGAGCCACTTGACTCTTTCGACTCCAAGGCCATCGATTACTCATTCGCCGATTCCTTCCTCGATTACGATTCTTTAAACGACTGGATTGACGAATTAACATCCCCTAATATGGTTGATGCACAAACGCTTCTTCCTGAAGCAGATGCTCATTTGAATCAATCCGTTGAAAAGTCTGTTCCAGTTATCGATGCAGTTCAACCCGTTGTTGTCAGGTCTGAAGACTTTAAACCAGAAGTGCAGGCGAGTGAGGCTTGTAGTAAGTCTACAGATTTGAATTCCATCATTGAAGAAGGGATGTCAAAAGTTAGCTTGGTTCTTGACGGTGGGTGCACTGCCAACGTTGAGTTGGAGTCTCAAGAGGATGATGGTGTAAGTGATGTGGAGTCCGAGGGCACAAGTTCAACTTCAACATCTAGTAGTAGTAGCTCTGGGAGAAGCAGCGACAGTGAAATAGACGAGGAGGAAGAGAATTCATCGTCTTCCAGTAGTGGCGACAGCAATTGCGATGATGAAGAAGAGGAGTACATGGTAAAAGCAGAGGGACAGAGAGAAATTGGTGAACTTGAAGAAGGTGAGATAAGGGACGTTAACGATGAAGACGAAGAAGCTTCTGCAGATGACATGGTTGCGTGGGATAGTGATGGTGAAAACTTCGATGGTGATGGTGATGGTGATGGTGAAGACTTCGAGGGAGAAGATGAAGAGGCTGGGGTTGAAGGAGGGCCAATTATTTCTAAAAATGAGCTTAAGGTTCTTCCTCCAGTTCCTCAAGTGCACGCGTCACTGCAGCCGCACCACCAAATGCTTCCTGTTGGAGTTGTTTTGTCAATAATAGGCAATCAAGTCATTGTAGAGGGTGTTGAGAAGCACAATCCTCTTAACGAAGGCTCTATCCTCTGGATAACTGAAGCTAGATCCCCATTGGGGTTGGTAGATGAGATCTTTGGACCGGTAAAAAATCCTTATTATTCTGTAAGGTACAATTCTGAAAGTGAAGTTCCTCATGGAATTAGTGGTGGCACTCACGTCTCCTTCGTTCTTGAGTTTGCCGATTATGTGCTAAATAACAAAGACCTGTACAAGAAGGGGTATGATGCATCCGGAGTGAATGATGAAGAGGTGTCAGATAATGATGAGTTCTCAGATGATGAGAAAGAGCTTGAGTTCAAGAAAATGCAAAAGTTGGCTAAGAGGGCTATGAATGACAACCAACAGATTAATGCCAACAGAAATAATGTTAGGAAGAAGAAAAACAATGCTAAAGCCAGGAAATTTGGTCAGCGTACATTTGAGACTGCAAATGTACCTGATGAGTCCAGGAAATTTTACCGCCAGCACACACCCGAGCAAGCAACAATACCTGAAGGCAGGAAATTTGATCAGCCAACACCACAGCAAGCAAAGATGGATATGGTTCAGCCATCCCCCAATCAAAACCAGCAGACGGGCCCTCCTTTGGCACCGTTTGTATATCACGGTGGTTGCCCAAACCCTTCAGTTGCAGAACAATGTTTTATCAATGGAACTGGTGTTATGCCATCTTTTCCACCAACGTACAACCCCTACTTTACACCAGCAATGAATGGAATTAGGCCCGCAGAAATGGCATTTCAGTTTCAGCAGCAGCAGCAGAATCCGTTCTTTCCCAACGGTCTTCCAATGAATGGCATGCCTTGGCTATTACAGAATCCTGCACAGCAATTGCCTCAAATGTCTATGCCGAATACATTTGCCGGAGCAGCGTATCCGCAAGGATTCGCAGGTCCATCATCTGCCCTACCTAATCTCTTGACAAGCGTAGGGGCACAAGCAATCCAATCCGGTGGACTACAGTTTGGACAGAATCAAAACAACTTGCAGCCTGCAACACAACAATTCAATCCCCCAAACTCGTGCCCACCATTTACATTTCCAGGAAACATATCACCACAACAGTTTAACCAAAACTCATCTTCAAACCAGGGAAGGAAATCTTATGGTCGCGGTCGTGGTGGACCTCATTTTAGAGGTAGAAGAGGTGGGCGACAAACTAGATGA

Protein sequence

MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELTSPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQASEACSKSTDLNSIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEIDEEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWDSDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESEVPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKMQKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQATIPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVMPSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMSMPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSCPPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR

Homology

[Close]

BLAST of Clc02G18380 vs. NCBI nr
Match: XP_008466591.1 (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo] >KAA0041662.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa] >TYJ97966.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1117.8 bits (2890), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 639/706 (90.51%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEF+PNSNAAS PDGLLHASSKLKN+EPLDSFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1   MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD QTLLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EACS STDLN
Sbjct: 61  SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG SDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEE+SSSSSSGD   DDEEEEY+V+AEG+REIGELEEGEIRD +DEDEEASADDMVAWD
Sbjct: 181 EEEESSSSSSSGD--YDDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEAG EGGPI SKNELKVLPPVPQVHA+LQPHH+MLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEAGAEGGPITSKNELKVLPPVPQVHATLQPHHKMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEG+EKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGIEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GI GGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKK+
Sbjct: 361 VPLGIRGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKKL 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQINAN+NN RKKKNNAKA KFGQRTFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINANKNNGRKKKNNAKAGKFGQRTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGR FD P PQQAKMDMVQPSPNQNQQTGP L PFVYHGGCPNPSVAE+CF+NGTGVM
Sbjct: 481 IFEGRNFDYPIPQQAKMDMVQPSPNQNQQTGPHLPPFVYHGGCPNPSVAERCFMNGTGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPP YNPYFTPAMNGIRP E+ FQF QQQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPAYNPYFTPAMNGIRPPEIPFQF-QQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           + NTFAGAAYPQGF GP SALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 ILNTFAGAAYPQGFVGPLSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP T  GNI+PQQ NQNSSS QGRKS  RGRGGPHFRG RGG+Q+R
Sbjct: 661 PPGTLSGNIAPQQLNQNSSSKQGRKS--RGRGGPHFRGSRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. NCBI nr
Match: KAA0042953.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1114.0 bits (2880), Expect = 0.0e+00
Identity = 603/707 (85.29%), Postives = 635/707 (89.82%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPNSN  SAPDGLLH SSKLKN+EPLDSFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1   MVEFAPNSNTTSAPDGLLHTSSKLKNSEPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD Q LLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EAC+ STDLN
Sbjct: 61  SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG +DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           +EEENSSSSSS D   DDEEEEY+V+AEG+REIGELEEGEIRD + EDEEASADDMVAWD
Sbjct: 181 KEEENSSSSSSSD--YDDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAWD 240

Query: 241 SDGENFDG-DGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPV 300
           +DGE+ DG D DGD ED +GE+EEA  EGGPI SKNELKVLPPVPQVHA+LQPHHQMLPV
Sbjct: 241 NDGEDLDGEDLDGDDEDLDGEEEEARAEGGPITSKNELKVLPPVPQVHATLQPHHQMLPV 300

Query: 301 GVVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES 360
           GVVLS++GNQVIVEGVEKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES
Sbjct: 301 GVVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES 360

Query: 361 EVPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKK 420
           EVP GISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKK
Sbjct: 361 EVPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKK 420

Query: 421 MQKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQA 480
           MQ+LAKRAMNDNQQIN N+NN RKKKNNAKARKF Q T E ANV DES+KFY Q TPEQA
Sbjct: 421 MQRLAKRAMNDNQQINGNKNNGRKKKNNAKARKFVQHTVENANVSDESKKFYGQRTPEQA 480

Query: 481 TIPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGV 540
           TI EGRKFD PTPQQAKMDMVQPSPNQNQQTGPPLAPFVY GGCPN SVAEQCF+N TGV
Sbjct: 481 TIFEGRKFDHPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYEGGCPNLSVAEQCFMNETGV 540

Query: 541 MPSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQM 600
           M SFPPTYNPYFTPAMNGIRPAEM FQF  QQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM
Sbjct: 541 MSSFPPTYNPYFTPAMNGIRPAEMPFQF-PQQQNPFFPNGLPMNGMPWLLQNPAQQMPQM 600

Query: 601 SMPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNS 660
            M NTF GAAYPQGF G SSALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS
Sbjct: 601 PMLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNS 660

Query: 661 CPPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
            PP TF GN  PQQFNQNSSS QGRKS+  GRGGPHFRGRRGG+Q+R
Sbjct: 661 HPPGTFSGNRVPQQFNQNSSSKQGRKSH--GRGGPHFRGRRGGQQSR 702

[Close]

BLAST of Clc02G18380 vs. NCBI nr
Match: XP_016902388.1 (PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo] >TYK11128.1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 1111.7 bits (2874), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 634/706 (89.80%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPNSN  SAPDGLLH SSKLKN+ PLDSFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1   MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD Q LLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EAC+ STDLN
Sbjct: 61  SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG +DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEENSSSSSS D   DDEEEEY+V+AEG+REIGELEEGEIRD + EDEEASADDMVAWD
Sbjct: 181 EEEENSSSSSSSD--YDDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEA  EGGPI SKNELKVLPPVPQVHA+LQPHHQMLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEARAEGGPITSKNELKVLPPVPQVHATLQPHHQMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEGVEKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFK+M
Sbjct: 361 VPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKEM 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQIN N+NN RKKKNNAKARKF Q TFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINGNKNNGRKKKNNAKARKFVQHTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGRKFD PTPQQAKMDMVQPSPNQNQQTGPPLAPFVY GGCP+ SVAEQCF+N TGVM
Sbjct: 481 IFEGRKFDHPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYQGGCPDLSVAEQCFMNETGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPPTYNPYFTPAMNGIRPAEM FQF  QQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPTYNPYFTPAMNGIRPAEMPFQF-PQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           M NTF GAAYPQGF G SSALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 MLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP TF GN +PQQFNQNSSS QGRKS+  GRGGPHFRGRRGG+Q+R
Sbjct: 661 PPGTFSGNRAPQQFNQNSSSKQGRKSH--GRGGPHFRGRRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. NCBI nr
Match: XP_031736889.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 [Cucumis sativus])

HSP 1 Score: 1090.1 bits (2818), Expect = 0.0e+00
Identity = 598/748 (79.95%), Postives = 636/748 (85.03%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPN+N ASAPDGLLH SSKLKN+EPLDSFDSKAIDYS  DSFLDYDSLNDW DELT
Sbjct: 1   MVEFAPNTNTASAPDGLLHDSSKLKNSEPLDSFDSKAIDYSLVDSFLDYDSLNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS----------- 120
           SPNMVD QTLLPE DAHL+QSV+KSVPVID VQ   VRSEDFK E++ S           
Sbjct: 61  SPNMVDTQTLLPEGDAHLSQSVQKSVPVIDGVQSNFVRSEDFKIEMKTSGEACSNSTDFN 120

Query: 121 ----------------EACSKSTDLNSIIEEGMSKVSLVLDGGCTANVELESQEDDGVSD 180
                           EACS STD NSIIEEGMSKVSLVLDGGC + VELES+ DDG  D
Sbjct: 121 SITEEGMPKVTLVLDGEACSNSTDFNSIIEEGMSKVSLVLDGGCISKVELESEADDGEGD 180

Query: 181 VESEGTSSTSTSSSSSSGRSSDSEIDEEEENSSSSSSGDSNCDDEEE-EYMVKAEGQREI 240
           VESEGTSS STSSSSSSG SSD+E+DEEEE+SSSS+S  + CDDEEE E +V+AEG+REI
Sbjct: 181 VESEGTSSASTSSSSSSGGSSDNEVDEEEEDSSSSTS--AGCDDEEEKENIVEAEGKREI 240

Query: 241 GELEEGEIRDVNDEDEEASADDMVAWDSDGENFDGDGDGDGEDFEGEDEEAGVEGGPIIS 300
           GELEEGEIRD +DEDEEA ADDMVAWD+DGE    D   D ED +GE+EEAG EGGPI S
Sbjct: 241 GELEEGEIRDADDEDEEAFADDMVAWDNDGE----DLKEDDEDLDGEEEEAGAEGGPITS 300

Query: 301 KNELKVLPPVPQVHASLQPHHQMLPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITEAR 360
           KNELKVLPPVPQVHA+LQPHHQMLPVGVVLS++GNQVIVEGVEKHNPL+EGSILWITEAR
Sbjct: 301 KNELKVLPPVPQVHATLQPHHQMLPVGVVLSMLGNQVIVEGVEKHNPLSEGSILWITEAR 360

Query: 361 SPLGLVDEIFGPVKNPYYSVRYNSESEVPHGISGGTHVSFVLEFADYVLNNKDLYKKGYD 420
           SPLGLVDEIFGPVKNPYYSVRYNSESEVP GISGGTHVSFVLEFADYVLNNKDLYKKGYD
Sbjct: 361 SPLGLVDEIFGPVKNPYYSVRYNSESEVPLGISGGTHVSFVLEFADYVLNNKDLYKKGYD 420

Query: 421 ASGVNDEEVSDNDEFSDDEKELEFKKMQKLAKRAMNDNQQINANRNNVRKKKNNAKARKF 480
           ASGVNDEEVSD+ EFSDDEKELEFKKMQ+LAKRAMNDNQQINAN+NN RKKKNNAKARKF
Sbjct: 421 ASGVNDEEVSDDGEFSDDEKELEFKKMQRLAKRAMNDNQQINANKNNGRKKKNNAKARKF 480

Query: 481 GQRTFETANVPDESRKFYRQHTPEQATIPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPP 540
           G+RTFE ANVPDE +KFY Q TPEQA I EGRKFD PTP QAKMDMV+PSPNQNQQTGPP
Sbjct: 481 GERTFENANVPDEPKKFYGQCTPEQAKISEGRKFDHPTPHQAKMDMVRPSPNQNQQTGPP 540

Query: 541 LAPFVYHGGCPNPSVAEQCFINGTGVMPSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQN 600
           LAPFVYHGGCPNPSVAEQCF+NGTG+M SFPPTYNP FTPAMNGIRPAEM FQF QQQQN
Sbjct: 541 LAPFVYHGGCPNPSVAEQCFMNGTGIMSSFPPTYNPCFTPAMNGIRPAEMPFQF-QQQQN 600

Query: 601 PFFPNGLPMNGMPWLLQNPAQ---------------QLPQMSMPNTFAGAAYPQGFAGPS 660
           PFFPNGLPMNGMPWLLQNPAQ               Q+PQM M NTFAGAAYPQGF GPS
Sbjct: 601 PFFPNGLPMNGMPWLLQNPAQQMPQMPQMPQMPQMPQMPQMPMLNTFAGAAYPQGFVGPS 660

Query: 661 SALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSCPPFTFPGNISPQQFNQNS 706
           SALPN  T+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS PP TF GN++PQQFNQNS
Sbjct: 661 SALPNSSTAVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSHPPGTFSGNVAPQQFNQNS 720

[Close]

BLAST of Clc02G18380 vs. NCBI nr
Match: XP_038901527.1 (H/ACA ribonucleoprotein complex non-core subunit NAF1 [Benincasa hispida])

HSP 1 Score: 1018.8 bits (2633), Expect = 2.2e-293
Identity = 561/645 (86.98%), Postives = 579/645 (89.77%), Query Frame = 0


Query: 64  MVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EAC-SKSTDLNSI 123
           MVDAQTLLPEADAHLNQSVEK VP+ID VQ  VVRSEDFKPEVQAS EAC SKS +LNSI
Sbjct: 1   MVDAQTLLPEADAHLNQSVEKPVPIIDGVQSNVVRSEDFKPEVQASGEACGSKSANLNSI 60

Query: 124 IEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEIDEE 183
           IEEGMSKVSLVLDGGC ANV+LESQED+G SDVESE TSSTSTSSSSSSGRSSD+EIDEE
Sbjct: 61  IEEGMSKVSLVLDGGCIANVKLESQEDEGESDVESESTSSTSTSSSSSSGRSSDNEIDEE 120

Query: 184 EENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWDSD 243
           EENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRD+ DEDEEASADDMVAWD D
Sbjct: 121 EENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDIADEDEEASADDMVAWDDD 180

Query: 244 GENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVGVV 303
            E    D D DGE+ +GEDEEAGVEGGPI SKNELKVLPPVPQVHA+LQPHHQMLPVGVV
Sbjct: 181 AE----DVDDDGENLDGEDEEAGVEGGPIRSKNELKVLPPVPQVHATLQPHHQMLPVGVV 240

Query: 304 LSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESEVP 363
           LSIIGNQVIVEG EKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYS+RYNSESEVP
Sbjct: 241 LSIIGNQVIVEGGEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSIRYNSESEVP 300

Query: 364 HGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKMQK 423
            GISGGTHVS VLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKKMQK
Sbjct: 301 LGISGGTHVSSVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKKMQK 360

Query: 424 LAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQATIP 483
           LAKRAMNDNQQIN NRNNVRKKKNNAKARKFGQ TFETANVPD       Q TPEQATI 
Sbjct: 361 LAKRAMNDNQQINGNRNNVRKKKNNAKARKFGQCTFETANVPD------GQRTPEQATIS 420

Query: 484 EGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVMPS 543
           EG KFDQPTPQQ KMDMVQPSPNQNQQTGP LAP VYHGGCPNPS A  CFINGTG+MPS
Sbjct: 421 EGWKFDQPTPQQGKMDMVQPSPNQNQQTGPSLAPVVYHGGCPNPSAARPCFINGTGIMPS 480

Query: 544 FPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNG-LPMNGMPWLLQNPAQQLPQMSM 603
           F P+YNPYFTPAMNGIRPAEM FQF QQQQNPFFPN  LPMNGMPW LQNP QQ+PQM+M
Sbjct: 481 FQPSYNPYFTPAMNGIRPAEMPFQF-QQQQNPFFPNSLLPMNGMPWQLQNPVQQVPQMAM 540

Query: 604 PNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSCP 663
            NTFAGAAYP GF GPS+ALPN LTSVG Q IQSGGLQFGQNQNNLQPATQQFN  N  P
Sbjct: 541 ANTFAGAAYPPGFVGPSTALPNPLTSVGPQGIQSGGLQFGQNQNNLQPATQQFNLSNMNP 600

Query: 664 PFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           P TFPGNI+PQQFNQNS SNQGRK YGRGR   HFRGRRGGRQ+R
Sbjct: 601 PVTFPGNIAPQQFNQNSFSNQGRKFYGRGRS--HFRGRRGGRQSR 632

[Close]

BLAST of Clc02G18380 vs. ExPASy Swiss-Prot
Match: P53919 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=NAF1 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.2e-12
Identity = 144/513 (28.07%), Postives = 216/513 (42.11%), Query Frame = 0


Query: 117 DLNSIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVE-SEGTSSTSTSSSSSSGRSSD 176
           DLN  + +    + L+ DGG       E + D+ V+D E S G  S S+ S S SG  SD
Sbjct: 16  DLNVELPKDDVDLGLLGDGG------NERKTDEPVADAERSTGLGSGSSESESDSGSDSD 75

Query: 177 SEIDEEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDM 236
           S+       S SS S D + D + E            GE E G+  +  DEDE+ S    
Sbjct: 76  SD-------SGSSGSEDDSADQDVE------------GEDEGGDAIENEDEDEDPS---- 135

Query: 237 VAWDSDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNEL--KVLPPVPQVHASLQPHH 296
                                           GPI+SKNE+  + +P +P+ +  +    
Sbjct: 136 ------------------------------PSGPILSKNEILEETVPELPEDY-EISEKT 195

Query: 297 QMLPVGVVLSIIGNQVIVEGV--EKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYS 356
            + P+GV+ S   N +I+      +   L EGSI  + E R+ +G++ E+FGP++NP+Y 
Sbjct: 196 IITPIGVLKSAFENNIIIHATMSGEKRVLKEGSIFCL-EDRTLIGMLTEVFGPLQNPFYR 255

Query: 357 VRY-----NSESEVPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDND- 416
           ++      N   E+   +  G     V   A ++   +    KG DAS   DEE+ + + 
Sbjct: 256 IKLPDSKKNLFDELK--VRLGEKAFIVTPDAHWIDTFELKRNKGTDASNGYDEELPEEEQ 315

Query: 417 EFSDDEKELEFKKMQKLAK-RAMNDNQQINANRNNVR-KKKNNAKAR---KFGQRTFETA 476
           EFSDDEKE  FKKM+K  + R   DN+++  + +NV+ K+    KA    K       ++
Sbjct: 316 EFSDDEKEALFKKMKKQQRQRKKRDNRKLANDSDNVKVKRARQPKANSLPKLVPPLGMSS 375

Query: 477 NVPDE---SRKFYRQHTPEQATIPEGRKFDQPTP-----QQAKMDMVQPSPNQ-NQQTGP 536
           N P +     +  R++   +++    R    P P     QQ       P P Q N    P
Sbjct: 376 NAPMQHGYKSRNARENIKRESSATSNRNGSSPVPITQHHQQQFSANNYPFPQQPNGMPYP 435

Query: 537 PLAPFVY--HGGCPNPSVAEQCFINGTGVMP--SFPPTYNPYFTPAMNGIRPAEMAFQFQ 596
           P +PF    +   P P   +      +  +P  S PP YN    P      P        
Sbjct: 436 PYSPFPQPTNFQYPPPPFGQATPAQFSNTVPYGSLPPAYNNMSPPTQQSFMP-------- 457

Query: 597 QQQQNPFFPNGL-PMNGM--PWLLQNPAQQLPQ 598
             Q  P  P G+ PMN M  P  +Q P Q  PQ
Sbjct: 496 MTQSQPPLPYGVPPMNQMQNPMYIQPPPQAPPQ 457

[Close]

BLAST of Clc02G18380 vs. ExPASy Swiss-Prot
Match: Q3UMQ8 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus OX=10090 GN=Naf1 PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-10
Identity = 70/212 (33.02%), Postives = 107/212 (50.47%), Query Frame = 0


Query: 224 NDEDEEASADDMVAWDSDGENFDGD-------GDGDGEDFEGEDEEAGVEGGPIISKNEL 283
           +D D E  +D   +  S   +            DGD EDF+ E E    +  P+ +K+EL
Sbjct: 115 SDSDSETDSDSSSSSSSSSSSSSSCVSFPPVLSDGD-EDFQLEKEN---KNFPLKTKDEL 174

Query: 284 KV--LPPVPQVHASLQPHHQMLPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSP 343
            +  LP V ++   L     + P+G V SII   VI+E V    P+NE ++++ ++ R  
Sbjct: 175 LLNELPSVEELTVILPEDIALKPLGKVSSIIEQLVIIESVTNIPPVNEDTVIFKSD-RQA 234

Query: 344 LGLVDEIFGPVKNPYYSVRYNSESEV-PHGISGGTHVSF---VLEFADYVLNNKDLYKKG 403
            G + EIFGPV +P+Y +R+NS   +   GI     + F   + +F  Y+   K    +G
Sbjct: 235 AGKIFEIFGPVAHPFYVLRFNSSDHIESKGIKINDTMYFAPSMKDFTQYIFTEKLKQDRG 294

Query: 404 YDASGVNDEEVSDND-EFSDDEKELEFKKMQK 422
            DAS  ND+E      +FSDDEKE E K+ +K
Sbjct: 295 SDASWKNDQEPPPEVLDFSDDEKEKEAKQRKK 321

[Close]

BLAST of Clc02G18380 vs. ExPASy Swiss-Prot
Match: O14360 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=naf1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.3e-09
Identity = 90/341 (26.39%), Postives = 149/341 (43.70%), Query Frame = 0


Query: 216 EEGEIRDVNDEDEEASADDMVAWDSDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNE 275
           E  E+   N    ++SAD      SD E+     + D E+ + E++       P      
Sbjct: 169 EIAEVTHSNSSIGKSSADLSSDSSSDSESNTSFSETDVEEEKAEEKSDAESMAPSTPPKT 228

Query: 276 LKVLPP--VPQVHASLQPHHQMLPVGVVLSIIGNQVIVEG-VEKHNPLNEGSILWITEAR 335
           +  LP     +    LQP+  + P+G ++ ++  +V+V+  ++    + +   +   E R
Sbjct: 229 VNELPEQIYEKPEIVLQPNSLIEPLGKIIQVLKREVVVKSDIDDEKIVFDEKTVLCFEDR 288

Query: 336 SPLGLVDEIFGPVKNPYYSVRYNSESEVPH-GISGGTHVSFVLEFADYVLNNKDLYKKGY 395
           S +G + E FGPV +PYY VR+++E E        G  V +V   A+ +      Y KG 
Sbjct: 289 SIIGYIHETFGPVSSPYYIVRFSTEEECSAINACMGRPVFYVPTMANKIDPEPLKYIKGS 348

Query: 396 DASGVNDEEVSDND-EFSDDEKELEFKKMQKLAKR----AMNDNQQINANRNNVRKKKNN 455
           DAS V DEE++ ++ EFSDDE E+  K+++K  KR     ++ NQ +    N     +NN
Sbjct: 349 DASNVYDEEINPSEQEFSDDEAEVAAKQLKKKRKRKAKSMVSGNQALPGEANFQSLNQNN 408

Query: 456 AKARKFGQRTFETANVPDESRKFYRQHTPEQATIPEGRKFDQPTPQQAKMDMVQPSPNQN 515
            +            N P     FY+ +   Q + P  ++F Q  P  +   + + S N +
Sbjct: 409 VR------------NYP-----FYQTN---QGSNPPAKRFTQEPPSSSLYSLSESSINYS 468

Query: 516 QQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVMPSFPPTYN 548
            Q     +P  Y+   P PS             P F P YN
Sbjct: 469 TQ-----SPMYYNYNYPQPS------------FPPFHPIYN 472

[Close]

BLAST of Clc02G18380 vs. ExPASy TrEMBL
Match: A0A5A7TE26 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00720 PE=3 SV=1)

HSP 1 Score: 1117.8 bits (2890), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 639/706 (90.51%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEF+PNSNAAS PDGLLHASSKLKN+EPLDSFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1   MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD QTLLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EACS STDLN
Sbjct: 61  SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG SDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEE+SSSSSSGD   DDEEEEY+V+AEG+REIGELEEGEIRD +DEDEEASADDMVAWD
Sbjct: 181 EEEESSSSSSSGD--YDDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEAG EGGPI SKNELKVLPPVPQVHA+LQPHH+MLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEAGAEGGPITSKNELKVLPPVPQVHATLQPHHKMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEG+EKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGIEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GI GGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKK+
Sbjct: 361 VPLGIRGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKKL 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQINAN+NN RKKKNNAKA KFGQRTFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINANKNNGRKKKNNAKAGKFGQRTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGR FD P PQQAKMDMVQPSPNQNQQTGP L PFVYHGGCPNPSVAE+CF+NGTGVM
Sbjct: 481 IFEGRNFDYPIPQQAKMDMVQPSPNQNQQTGPHLPPFVYHGGCPNPSVAERCFMNGTGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPP YNPYFTPAMNGIRP E+ FQF QQQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPAYNPYFTPAMNGIRPPEIPFQF-QQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           + NTFAGAAYPQGF GP SALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 ILNTFAGAAYPQGFVGPLSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP T  GNI+PQQ NQNSSS QGRKS  RGRGGPHFRG RGG+Q+R
Sbjct: 661 PPGTLSGNIAPQQLNQNSSSKQGRKS--RGRGGPHFRGSRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. ExPASy TrEMBL
Match: A0A1S3CRN9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN=LOC103503966 PE=3 SV=1)

HSP 1 Score: 1117.8 bits (2890), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 639/706 (90.51%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEF+PNSNAAS PDGLLHASSKLKN+EPLDSFDSKAIDY F DSFLDYDSLNDW +ELT
Sbjct: 1   MVEFSPNSNAASDPDGLLHASSKLKNSEPLDSFDSKAIDYPFVDSFLDYDSLNDWFNELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD QTLLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EACS STDLN
Sbjct: 61  SPNMVDTQTLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACSNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG SDVESEGTSS STSSSSSSG SSD+E++
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEVDDGESDVESEGTSSVSTSSSSSSGGSSDNEVE 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEE+SSSSSSGD   DDEEEEY+V+AEG+REIGELEEGEIRD +DEDEEASADDMVAWD
Sbjct: 181 EEEESSSSSSSGD--YDDEEEEYIVEAEGKREIGELEEGEIRDADDEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEAG EGGPI SKNELKVLPPVPQVHA+LQPHH+MLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEAGAEGGPITSKNELKVLPPVPQVHATLQPHHKMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEG+EKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGIEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GI GGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKK+
Sbjct: 361 VPLGIRGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKKL 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQINAN+NN RKKKNNAKA KFGQRTFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINANKNNGRKKKNNAKAGKFGQRTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGR FD P PQQAKMDMVQPSPNQNQQTGP L PFVYHGGCPNPSVAE+CF+NGTGVM
Sbjct: 481 IFEGRNFDYPIPQQAKMDMVQPSPNQNQQTGPHLPPFVYHGGCPNPSVAERCFMNGTGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPP YNPYFTPAMNGIRP E+ FQF QQQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPAYNPYFTPAMNGIRPPEIPFQF-QQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           + NTFAGAAYPQGF GP SALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 ILNTFAGAAYPQGFVGPLSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP T  GNI+PQQ NQNSSS QGRKS  RGRGGPHFRG RGG+Q+R
Sbjct: 661 PPGTLSGNIAPQQLNQNSSSKQGRKS--RGRGGPHFRGSRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. ExPASy TrEMBL
Match: A0A5A7TI04 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G00250 PE=3 SV=1)

HSP 1 Score: 1114.0 bits (2880), Expect = 0.0e+00
Identity = 603/707 (85.29%), Postives = 635/707 (89.82%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPNSN  SAPDGLLH SSKLKN+EPLDSFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1   MVEFAPNSNTTSAPDGLLHTSSKLKNSEPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD Q LLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EAC+ STDLN
Sbjct: 61  SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG +DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           +EEENSSSSSS D   DDEEEEY+V+AEG+REIGELEEGEIRD + EDEEASADDMVAWD
Sbjct: 181 KEEENSSSSSSSD--YDDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAWD 240

Query: 241 SDGENFDG-DGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPV 300
           +DGE+ DG D DGD ED +GE+EEA  EGGPI SKNELKVLPPVPQVHA+LQPHHQMLPV
Sbjct: 241 NDGEDLDGEDLDGDDEDLDGEEEEARAEGGPITSKNELKVLPPVPQVHATLQPHHQMLPV 300

Query: 301 GVVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES 360
           GVVLS++GNQVIVEGVEKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES
Sbjct: 301 GVVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSES 360

Query: 361 EVPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKK 420
           EVP GISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFKK
Sbjct: 361 EVPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKK 420

Query: 421 MQKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQA 480
           MQ+LAKRAMNDNQQIN N+NN RKKKNNAKARKF Q T E ANV DES+KFY Q TPEQA
Sbjct: 421 MQRLAKRAMNDNQQINGNKNNGRKKKNNAKARKFVQHTVENANVSDESKKFYGQRTPEQA 480

Query: 481 TIPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGV 540
           TI EGRKFD PTPQQAKMDMVQPSPNQNQQTGPPLAPFVY GGCPN SVAEQCF+N TGV
Sbjct: 481 TIFEGRKFDHPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYEGGCPNLSVAEQCFMNETGV 540

Query: 541 MPSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQM 600
           M SFPPTYNPYFTPAMNGIRPAEM FQF  QQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM
Sbjct: 541 MSSFPPTYNPYFTPAMNGIRPAEMPFQF-PQQQNPFFPNGLPMNGMPWLLQNPAQQMPQM 600

Query: 601 SMPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNS 660
            M NTF GAAYPQGF G SSALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS
Sbjct: 601 PMLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNS 660

Query: 661 CPPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
            PP TF GN  PQQFNQNSSS QGRKS+  GRGGPHFRGRRGG+Q+R
Sbjct: 661 HPPGTFSGNRVPQQFNQNSSSKQGRKSH--GRGGPHFRGRRGGQQSR 702

[Close]

BLAST of Clc02G18380 vs. ExPASy TrEMBL
Match: A0A5D3CIV9 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00340 PE=3 SV=1)

HSP 1 Score: 1111.7 bits (2874), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 634/706 (89.80%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPNSN  SAPDGLLH SSKLKN+ PLDSFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1   MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD Q LLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EAC+ STDLN
Sbjct: 61  SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG +DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEENSSSSSS D   DDEEEEY+V+AEG+REIGELEEGEIRD + EDEEASADDMVAWD
Sbjct: 181 EEEENSSSSSSSD--YDDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEA  EGGPI SKNELKVLPPVPQVHA+LQPHHQMLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEARAEGGPITSKNELKVLPPVPQVHATLQPHHQMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEGVEKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFK+M
Sbjct: 361 VPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKEM 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQIN N+NN RKKKNNAKARKF Q TFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINGNKNNGRKKKNNAKARKFVQHTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGRKFD PTPQQAKMDMVQPSPNQNQQTGPPLAPFVY GGCP+ SVAEQCF+N TGVM
Sbjct: 481 IFEGRKFDHPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYQGGCPDLSVAEQCFMNETGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPPTYNPYFTPAMNGIRPAEM FQF  QQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPTYNPYFTPAMNGIRPAEMPFQF-PQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           M NTF GAAYPQGF G SSALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 MLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP TF GN +PQQFNQNSSS QGRKS+  GRGGPHFRGRRGG+Q+R
Sbjct: 661 PPGTFSGNRAPQQFNQNSSSKQGRKSH--GRGGPHFRGRRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. ExPASy TrEMBL
Match: A0A1S4E2D7 (H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN=LOC103498379 PE=3 SV=1)

HSP 1 Score: 1111.7 bits (2874), Expect = 0.0e+00
Identity = 601/706 (85.13%), Postives = 634/706 (89.80%), Query Frame = 0


Query: 1   MVEFAPNSNAASAPDGLLHASSKLKNAEPLDSFDSKAIDYSFADSFLDYDSLNDWIDELT 60
           MVEFAPNSN  SAPDGLLH SSKLKN+ PLDSFDSKAIDYSF DSFLDYDS NDW DELT
Sbjct: 1   MVEFAPNSNTTSAPDGLLHTSSKLKNSGPLDSFDSKAIDYSFVDSFLDYDSFNDWFDELT 60

Query: 61  SPNMVDAQTLLPEADAHLNQSVEKSVPVIDAVQPVVVRSEDFKPEVQAS-EACSKSTDLN 120
           SPNMVD Q LLPE DAHL+QSVEKSVPVID VQ   VRSEDFK E+QAS EAC+ STDLN
Sbjct: 61  SPNMVDTQKLLPEGDAHLSQSVEKSVPVIDGVQSNFVRSEDFKIEMQASGEACNNSTDLN 120

Query: 121 SIIEEGMSKVSLVLDGGCTANVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEID 180
           SIIEEGMSKVSLVLDGGCT+ VELES+ DDG +DVESEGTSS STSSSSSSG SSD+E+D
Sbjct: 121 SIIEEGMSKVSLVLDGGCTSKVELESEADDGENDVESEGTSSISTSSSSSSGGSSDNEVD 180

Query: 181 EEEENSSSSSSGDSNCDDEEEEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWD 240
           EEEENSSSSSS D   DDEEEEY+V+AEG+REIGELEEGEIRD + EDEEASADDMVAWD
Sbjct: 181 EEEENSSSSSSSD--YDDEEEEYIVEAEGKREIGELEEGEIRDADGEDEEASADDMVAWD 240

Query: 241 SDGENFDGDGDGDGEDFEGEDEEAGVEGGPIISKNELKVLPPVPQVHASLQPHHQMLPVG 300
           +DGE    D DGD ED +GE+EEA  EGGPI SKNELKVLPPVPQVHA+LQPHHQMLPVG
Sbjct: 241 NDGE----DLDGDDEDLDGEEEEARAEGGPITSKNELKVLPPVPQVHATLQPHHQMLPVG 300

Query: 301 VVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360
           VVLS++GNQVIVEGVEKHNPL+EGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE
Sbjct: 301 VVLSMLGNQVIVEGVEKHNPLSEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESE 360

Query: 361 VPHGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKM 420
           VP GISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSD+ EFSDDEKELEFK+M
Sbjct: 361 VPLGISGGTHVSFVLEFADYVLNNKDLYKKGYDASGVNDEEVSDDGEFSDDEKELEFKEM 420

Query: 421 QKLAKRAMNDNQQINANRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQAT 480
           Q+LAKRAMNDNQQIN N+NN RKKKNNAKARKF Q TFE ANVPDES+KFY Q TPEQAT
Sbjct: 421 QRLAKRAMNDNQQINGNKNNGRKKKNNAKARKFVQHTFENANVPDESKKFYGQRTPEQAT 480

Query: 481 IPEGRKFDQPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYHGGCPNPSVAEQCFINGTGVM 540
           I EGRKFD PTPQQAKMDMVQPSPNQNQQTGPPLAPFVY GGCP+ SVAEQCF+N TGVM
Sbjct: 481 IFEGRKFDHPTPQQAKMDMVQPSPNQNQQTGPPLAPFVYQGGCPDLSVAEQCFMNETGVM 540

Query: 541 PSFPPTYNPYFTPAMNGIRPAEMAFQFQQQQQNPFFPNGLPMNGMPWLLQNPAQQLPQMS 600
            SFPPTYNPYFTPAMNGIRPAEM FQF  QQQNPFFPNGLPMNGMPWLLQNPAQQ+PQM 
Sbjct: 541 SSFPPTYNPYFTPAMNGIRPAEMPFQF-PQQQNPFFPNGLPMNGMPWLLQNPAQQMPQMP 600

Query: 601 MPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQNNLQPATQQFNPPNSC 660
           M NTF GAAYPQGF G SSALPN LT+VGAQ I SGGLQFGQNQNNLQPA QQFNPPNS 
Sbjct: 601 MLNTFVGAAYPQGFVGSSSALPNSLTTVGAQGIHSGGLQFGQNQNNLQPAAQQFNPPNSH 660

Query: 661 PPFTFPGNISPQQFNQNSSSNQGRKSYGRGRGGPHFRGRRGGRQTR 706
           PP TF GN +PQQFNQNSSS QGRKS+  GRGGPHFRGRRGG+Q+R
Sbjct: 661 PPGTFSGNRAPQQFNQNSSSKQGRKSH--GRGGPHFRGRRGGQQSR 697

[Close]

BLAST of Clc02G18380 vs. TAIR 10
Match: AT1G03530.1 (nuclear assembly factor 1 )

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-70
Identity = 259/662 (39.12%), Postives = 331/662 (50.00%), Query Frame = 0


Query: 83  EKSVPVIDAVQPVVVRSEDFK-PEVQASEACSKSTD--LNSIIEEGMSKVSLVLDGGCTA 142
           E S  +    +PVVV       P +   E+  K TD  L   IE G+ KVSL +D     
Sbjct: 176 ENSRSMEGETEPVVVSDASVACPTMDLDESGLKKTDEGLACSIEVGLEKVSLAVDD---- 235

Query: 143 NVELESQEDDGVSDVESEGTSSTSTSSSSSSGRSSDSEIDEEEENSSSSSSGDSNCDDEE 202
               + + D+   +++S  + S ++SSS+S   SSDS   EEEE+    S  + N  +E+
Sbjct: 236 ----DEKSDEAKGEMDSAESESETSSSSAS---SSDSSSSEEEESDEDESDKEENKKEEK 295

Query: 203 EEYMVKAEGQREIGELEEGEIRDVNDEDEEASADDMVAWDSDGENFDGDGDGDGEDF--- 262
            E+MV  +     GELEEGEI ++   DEE   DD+   D D ++ D D D   E     
Sbjct: 296 FEHMVVGKEDDLAGELEEGEIENL---DEENGDDDIEDEDDDDDDDDDDDDDVNEMVAWS 355

Query: 263 EGEDEEAGVE-GGPIISKNELKVLPPVPQVHASLQPHHQMLPVGVVLSIIGNQVIVEGVE 322
             ED++ G++   PI SKNELK LPPVP V  +L+PHH  LPVGVVLS++  QVIVEG+E
Sbjct: 356 NDEDDDLGLQTKEPIRSKNELKELPPVPPVDVTLEPHHATLPVGVVLSVMSAQVIVEGME 415

Query: 323 KHNPLNEGSILWITEARSPLGLVDEIFGPVKNPYYSVRYNSESEVPHGISGGTHVSFVLE 382
           KH+PL EGSILWITE R+PLGLVDEIFGPVK PYY VR+NSESEVP G+  GT VSFV +
Sbjct: 416 KHSPLTEGSILWITEKRTPLGLVDEIFGPVKCPYYIVRFNSESEVPEGVCQGTPVSFVAD 475

Query: 383 FADYVLNNKDLYKKGYDASGVNDEEVSDNDEFSDDEKELEFKKMQKLAKRAMNDNQQINA 442
           FA ++LN K+L KKGYDASG NDEE+ D  EFSDDEKE E+++MQKL KR M  +Q+   
Sbjct: 476 FAQHILNIKELQKKGYDASGDNDEEIPDELEFSDDEKEAEYRRMQKLEKRGMMSDQKTGN 535

Query: 443 NRNNVRKKKNNAKARKFGQRTFETANVPDESRKFYRQHTPEQATIPEGRKFDQPTPQQAK 502
            RN  +KKKN    R     + E       S     +  P+            P PQ   
Sbjct: 536 TRN--KKKKNRDPGRPTSSYSGEWTKNQGSSSLSSNRSDPQMG---------GPRPQ--- 595

Query: 503 MDMVQPS-----PNQNQQTGPPLAPFVYHGGCPNPSVAEQ---------CFINGTGVMPS 562
           MD   P+     P  NQQ    L P     G   P +A Q          F  G   MP 
Sbjct: 596 MDGFPPNNAAWRPQSNQQNPYQLPPIPNQMGMQIPFMAMQNQNQMMFQPQFNGGQMPMPG 655

Query: 563 FPPTYNPYFTPAMNGIRPAEMAFQ-FQQQ-------QQNP--------FFPNGLPMNGMP 622
            P   N +F    +   PA +    F QQ       QQ P         F  GL M+   
Sbjct: 656 GPGGLN-FFPGQASAPWPAMVGQNCFNQQFGMGRGIQQQPLPNELSFNMFSQGLQMHPPQ 715

Query: 623 WLLQNPAQQL-PQMSMPNTFAGAAYPQGFAGPSSALPNLLTSVGAQAIQSGGLQFGQNQN 682
             +  P  Q+ PQ  MP  F    + Q    P   + +   S      Q       Q Q+
Sbjct: 716 SQMHRPQSQMNPQFQMPPQF--QPHQQSPMNPQYQMMHRPQSPANPQFQM------QAQS 775

Query: 683 NLQPATQQFNPPNSCPPFTFPGNISPQQFNQNSSSNQGRKSYGRGRG---GPHFRGRRGG 704
           +++P   Q   P S      P     Q F+   SS +GR  +GRGRG   G   RGR  G
Sbjct: 776 DVRPLQSQI--PQSPSDLQSPMEPQSQGFSSGQSSERGRGFHGRGRGRGRGRFGRGRGRG 798

[Close]

BLAST of Clc02G18380 vs. TAIR 10
Match: AT4G03380.1 (BEST Arabidopsis thaliana protein match is: nuclear assembly factor 1 (TAIR:AT1G03530.1); Has 29 Blast hits to 29 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 6.0e-07
Identity = 33/84 (39.29%), Postives = 47/84 (55.95%), Query Frame = 0


Query: 296 LPVGVVLSIIGNQVIVEGVEKHNPLNEGSILWITEARSPLGLVD-EIFGPVKNPYYSVRY 355
           +P GVV  +    ++V     H PLN G++L ITE + PLG VD   FG V NP Y V+ 
Sbjct: 9   VPAGVVNMV--QYLVVTNKGDHKPLNVGTMLLITETKVPLGRVDGYFFGSVTNPDYIVKV 68

Query: 356 -NSESEVPHGISGGTHVSFVLEFA 378
            +SE ++P    GG   SF ++ +
Sbjct: 69  EDSEMQIPEVRQGGPSGSFGVDLS 90

The following BLAST results are available for this feature:

BLAST of Clc02G18380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008466591.1	0.0e+00	85.13	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1...	[more]
KAA0042953.1	0.0e+00	85.29	H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1 [Cucumis m...	[more]
XP_016902388.1	0.0e+00	85.13	PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1-like isoform X1...	[more]
XP_031736889.1	0.0e+00	79.95	H/ACA ribonucleoprotein complex non-core subunit NAF1 isoform X1 [Cucumis sativu...	[more]
XP_038901527.1	2.2e-293	86.98	H/ACA ribonucleoprotein complex non-core subunit NAF1 [Benincasa hispida]	[more]

BLAST of Clc02G18380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P53919	1.2e-12	28.07	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Saccharomyces cerevisia...	[more]
Q3UMQ8	1.1e-10	33.02	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Mus musculus OX=10090 G...	[more]
O14360	1.3e-09	26.39	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Schizosaccharomyces pom...	[more]

BLAST of Clc02G18380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TE26	0.0e+00	85.13	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw...	[more]
A0A1S3CRN9	0.0e+00	85.13	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN...	[more]
A0A5A7TI04	0.0e+00	85.29	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw...	[more]
A0A5D3CIV9	0.0e+00	85.13	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo var. makuw...	[more]
A0A1S4E2D7	0.0e+00	85.13	H/ACA ribonucleoprotein complex non-core subunit NAF1 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Clc02G18380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03530.1	2.9e-70	39.12	nuclear assembly factor 1	[more]
AT4G03380.1	6.0e-07	39.29	BEST Arabidopsis thaliana protein match is: nuclear assembly factor 1 (TAIR:AT1G...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 416..450
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 689..705
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 481..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..217
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 664..685
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 493..509
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 638..705
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 638..653
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..264
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..266
None	No IPR available	PANTHER	PTHR31633:SF1	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	coord: 34..696
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 279..423 e-value: 3.4E-35 score: 121.1
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 267..373 e-value: 7.7E-27 score: 95.6
IPR040309	H/ACA ribonucleoprotein complex non-core subunit Naf1	PANTHER	PTHR31633	H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1	coord: 34..696
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 295..358

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18380.1	Clc02G18380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000493	box H/ACA snoRNP assembly
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005732	sno(s)RNA-containing ribonucleoprotein complex
molecular_function	GO:0003723	RNA binding