Clc02G18060 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G18060
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CCHC-type domain-containing protein
Location	ClcChr02: 30599537 .. 30604216 (+)
RNA-Seq Expression	Clc02G18060
Synteny	Clc02G18060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGCATATTGGCGCCAAAGTTCCCGCCAAAGGCATCAAGAAAGGTTTCCCATAGGGTTTATGATGTTTTGTTCGTAATCACAACACCCAATTCAGATTCTTCACATAATTTTCCAATCTCCATATCCGATCGGATCAAATCGCTCCAAGCCGACTGAAGTTTGCGAATATAGCCAGAGGGATCTAACATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGTGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCCAATCCCAATCCCAATCCCACTTCCAATTCTTCCACACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAATCGCAGAGAAGCCCAAGAAACCCCCCAGAACCAGGCCTAAGCTCACTCCTGACCTACTCCTTTCCGAGGATGGTCTTGGTTACGTCCTTCGCCATTTCCCTCGCGCCTTCAAGTATCGCGGCCGTGGACATGAGGTTATCTTCTATTTTCCTTCCGATTATTATGTAAATACTCGATTTGTTCTCATATGCTATATATGAGTTTTATTTGAGATATATTTCAACATTGCTGCTCAAGGTCGAAGAAGGTTTTCGAAAAGAAAATACTAATTACTAGAGCCTGGCGCGTTTTAGGGTTTAGGTTTTTGTGTTGTTGTATGATTAGAAACAATTTGGAATGTAAATAAAGATTTGCTTTGGAGAATTGTATGAGAGAGCTCAGGTTCATCGGCGGCAATCGGGATTTACCTTAATGGCTTGTTTAATGGGCGCTACTTTTGGAACACAAGATTGCTAATCTTTTTCCATTGAATTATAGCTAAATGCACTTCATCAACACCGTATATGTATGTCGTTTCTTTTTTCTTATTACCGTTTCATCCTCTCATCTATTCTCATTTTCTAATGATTTGATTATTGTACTGATTGAGTTATATTTTTTATTGTTGTTTTGTAGATCAGCGATTTGGAAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTTGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGGTAAAAATGTGCACGAACCCTGAATTTATATGCTCTTTTATTATGAAAGTGGTGTCCATATATGGCTTGCTGGATTGGTATGTGTCTAAGTACAGAAATTTATCCTAATAACATACTAATGTAGATAGAAATTTTGGCCTAAAGGAACTGCACTTAAGAAACCCAGTGCATCTGAAGGGAGAACACACAGAAACTGCATTATATTGTGTTGGCATGCTGAACGCACTCTAACTCTGTAATATTTTAAGTGAATCATTGTTTATCGAATCAAATCAACATGGAGTAAACTTGTTTATTAAATGATATCTAATTTACAATGAATTGGGATTCTTTCTAAAAAGACATGTTTTGAGCAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTCTAAATGATGATGATGTCAATAATGAAAAAGGTACCTTCTAGTATTCTCATTTATTAAAAGACACTCATATAATTATTTTCCTTAGCTGTTTGGTAAGTTGTACATTGTCCTCGAACTCTATTTAAAAAGATTTAATTTGGTTTAGATGATGAATTTAAAGTCAACTGAACTGAAAAAGAAAATAAAATATTGAAATTGAACACGATGATTAGTTTATTGTCGTTCCATTATGATTTCTAAAAGTTTTTTGTAATTTCTCCAAAAGTAGCCATGTCCATCTCTGAGAATTTTAGGTATTAAGAAGATCAATATCTAAAAACATTGAACAGCGCAAATGAAAGATGATTGTACTATCGTTGTTTTCTATGTTCCACTCCCACCAAGACAGAATTCTATGAAAACTTCCAAATACTGCTCATTCAAATTGTCGTCTTCAGCGTTGGAAGAACAATGTTTGACTAGGGCTCAGTTTACCCGAGTGTATTAATGGGCTGGTTGGGATCAGTAAGCTTAACTTTTTCTCCAATGATGGAAAACACTGTCTAGTGAGGAGTTGTAGGTGGCTTTTGTTTGTCATTAGCCATTACTCTTACATTCAGCTTCCATCAATATGTTGCCTCCATCACCTTCTTGGGCATTGGTATCCGAGTCTTTTTGTCATTGAGTCACGTTTTACTGGACTGGAGCTCCTTCTTATGGTTGGCTCTCCTTTTTGTGGGCTTCTTGTTTTTGTTTGCCTATGTATTCTTTCATTTCTTCTCAACAAAAGTTATGTGTTTTAATTAAAAATGTTCTGGATCCCACCTTGGAAAAGTGGAGAGAACTCACAATTTTAAAAGATACATGAGTTTCTCGGTTATTGACAATTGGTTTTAAGATGAAATTCCATGTAAAAAAATATTAACTCATCATCTTTCTTTCTCTTACACATATTCGTACGCTTAGGGTTTTTGATAACAATGTACACCTTTGCCAATTGGAGCTCAGTTCTAAATATCATCCAACTCTTTGGCATCTGAATGCCCACTTTGGTAGGCACTACGCAGTTGGTGCTTGGGATAAAATGTAGGCTGTAATTATGTTGCCTTTTTCATTTTCTTTGCACTTTGCACGGCATGGTATGTTTCTTGGCTCTGTGTAGTTAGAAATGCAACCTAGAAAGTTAAATCCTTCTATTTGAGTATTTTCTCTCATGTTTGGAACTATACTCTGATATGATGTTTGGAAAATATTTTTAGATTCTAAAACTAATCATTGTTTGAGTAACCCTTTTCTTGAACTTTAATTCTGTCTGCCAATGCTTGCAGAAGCCAAAGACCCGGAAGGCGTATTTGATGATCTGGAAGAGGCTTCTTTGAGAAATAATTGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAGTAAGTCTTTCTCTGTTCACCTTTTTTTTGAACACTTGGTTGCTTTCCATCCCTACTATATGTTTTAGCTTTAACGTACCATTTCTTACTGAGAAAAATCTCGCAGTTATTGAATTGAATTAGGAAATTTTACCATGAGTCGTACATTAGATTTCAGGAATAGTCATAATGAAGCAAACTGTGTTTTCAGTCCTTCATTTGGCAGATCAATTTTCCAGATGAAGGTGTCGGTCGATTATTGAAAATCCATATGTCAATGCCCCAATTAACTATAATTTGCACTTAAACTTATTTTATCAGGGGAGCACTTTCTAATTATTGCACAAGTTCATGCATCTTCATATTTGATCAAAGAGTTTTCACCTAATGACAGCAAAAGAAAATGCTGAGTAACTGCCCATACAGTAGAAGATGAAGGTCTATCATTTCCCTTTTTAGGGACAAATCAATTTATATCCCTAAGCTTTGGATATTGTACTTTAGAAACTCCAAACTAATAACTATGTCGGTTTAAACTCAAAACTTTCCAAATTAATTTAGATGAATTGTTAGTGATTTATATCAACTTGCACTTAGTTCCACTTAAAATCAGCTAAAAATTACATAAATATAATTAGTCTTCTCTCATCCCACCGAAAGTGCAAGAAAAATTGTTACATGATTCTTTCTAAGTAAAGAAAAATAGAGTGAGACGAGAAGATGAATTATCAGTCAGAGATATGGAAAAAACACTACCATCTATTTCATTACTGCATTTCTCATTTATATTTGTTCTTGTATATGGAGAAGTTTCATATACATGTGAAAGCTATGAAGTTCAATACATGTATGAAGAAGTTTTATACACGGACGAAAGTTATGCGTTAAACTGTTTTTACCTAACTATGATAAAAAGTAAGCTTAGGTCAAAACCCTTATCTGTATACTAATGTGTATAGATCGAACCTTCCACTTGATGAGAAACTTGAAGAAAGCAGACCTCCATCCTTATTCTCTTTAACTTGAGTTTTGGTACCTAACACCATTTCATGACATATTAACGATCTACAACACTTGATTACGTTATACGGGTTTTATTTACATGATTGTAGGACTATAACTCATTTGGTGAACTAAGAAGCAAATTTACATGATTGTAGAAACCACTGCAAAATTTACAAAGTGATTCCTTCACCAATGGTGAAACTATGGTGGCCAACCAAGAACCAAACACTAGCAATTCAAGTGAAACTCAACTCACGGAGGAACAGAGAGGTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCCACTGTCTGATTCATATGCCTGCTTTCCGTAGATTTCACTTCATTGCAAAGGCATTAATATTCAAAGTGATAGTTTTTGGCTAGTGAAGGCACAACCACCTTAGGGAGTTCTTCCTCGAATCTCCAAAAATTTCTAAATTTAGACTACTGAGTGTTTAGAATGTCAATTAGCAATGTTACTCGCTCATTTTGAAAGGTTATCATTAATCAATGGAGCTTGCATTGTAAATTAATAATTTCTTTTTAGTCCAACAAAAGTGGAGGCATGAGGTTTGAGTTTTCGGCTTTAAATGAAAGAGTATAGGTTGATTATTATTGAGTTATATACATGTTGACTATTGACATTTTTGACAGGATGAGTTGTCTTATATAATATTTTGGTTCGATTTGAGATTGTTTTAAA

mRNA sequence

GTGGCATATTGGCGCCAAAGTTCCCGCCAAAGGCATCAAGAAAGGTTTCCCATAGGGTTTATGATGTTTTGTTCGTAATCACAACACCCAATTCAGATTCTTCACATAATTTTCCAATCTCCATATCCGATCGGATCAAATCGCTCCAAGCCGACTGAAGTTTGCGAATATAGCCAGAGGGATCTAACATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGTGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCCAATCCCAATCCCAATCCCACTTCCAATTCTTCCACACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAATCGCAGAGAAGCCCAAGAAACCCCCCAGAACCAGGCCTAAGCTCACTCCTGACCTACTCCTTTCCGAGGATGGTCTTGGTTACGTCCTTCGCCATTTCCCTCGCGCCTTCAAGTATCGCGGCCGTGGACATGAGATCAGCGATTTGGAAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTTGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTCTAAATGATGATGATGTCAATAATGAAAAAGAAGCCAAAGACCCGGAAGGCGTATTTGATGATCTGGAAGAGGCTTCTTTGAGAAATAATTGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAAAACCACTGCAAAATTTACAAAGTGATTCCTTCACCAATGGTGAAACTATGGTGGCCAACCAAGAACCAAACACTAGCAATTCAAGTGAAACTCAACTCACGGAGGAACAGAGAGGTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCCACTGTCTGATTCATATGCCTGCTTTCCGTAGATTTCACTTCATTGCAAAGGCATTAATATTCAAAGTGATAGTTTTTGGCTAGTGAAGGCACAACCACCTTAGGGAGTTCTTCCTCGAATCTCCAAAAATTTCTAAATTTAGACTACTGAGTGTTTAGAATGTCAATTAGCAATGTTACTCGCTCATTTTGAAAGGTTATCATTAATCAATGGAGCTTGCATTGTAAATTAATAATTTCTTTTTAGTCCAACAAAAGTGGAGGCATGAGGTTTGAGTTTTCGGCTTTAAATGAAAGAGTATAGGTTGATTATTATTGAGTTATATACATGTTGACTATTGACATTTTTGACAGGATGAGTTGTCTTATATAATATTTTGGTTCGATTTGAGATTGTTTTAAA

Coding sequence (CDS)

ATGGAGAAGGACAACGCCGCCGTCGCAGCGCCGACGGGATGCTACAAGTGTGGGAAGCCGGGCCACTGGTCTCGTGATTGCCCTTCCTCCGCTCCAAATCCCAATCCCAATCCCAATCCCAATCCCACTTCCAATTCTTCCACACCTCCTTTCTCCTCTGCTCCTGCTGCCCCTTCAAAAATCGCAGAGAAGCCCAAGAAACCCCCCAGAACCAGGCCTAAGCTCACTCCTGACCTACTCCTTTCCGAGGATGGTCTTGGTTACGTCCTTCGCCATTTCCCTCGCGCCTTCAAGTATCGCGGCCGTGGACATGAGATCAGCGATTTGGAAAACCTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTATTACTCTTTTGAGCATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTAAAGATGTGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGTGAGGCACCAATTCTAAATGATGATGATGTCAATAATGAAAAAGAAGCCAAAGACCCGGAAGGCGTATTTGATGATCTGGAAGAGGCTTCTTTGAGAAATAATTGTGCTGATGACATTGAAGAGGACATGCTTCAGGAAGTTTATGAGAAAGCTACGGAAAAACCACTGCAAAATTTACAAAGTGATTCCTTCACCAATGGTGAAACTATGGTGGCCAACCAAGAACCAAACACTAGCAATTCAAGTGAAACTCAACTCACGGAGGAACAGAGAGGTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGAGCTGCAGCCAAGGCCCGCTCGTTGCCCACTGTCTGA

Protein sequence

MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDVNNEKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETMVANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPTV

Homology

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BLAST of Clc02G18060 vs. NCBI nr
Match: XP_038889611.1 (TIMELESS-interacting protein [Benincasa hispida])

HSP 1 Score: 497.3 bits (1279), Expect = 8.8e-137
Identity = 262/294 (89.12%), Postives = 269/294 (91.50%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPN-----------PNPNPTSNSSTP 60
           MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNP            PNPNPTSNSS P
Sbjct: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSSDCPSSAPNPNPTSNSSRP 60

Query: 61  PFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDL 120
           PFSSAPAAPSK+AEKPKK PRTRPKLTP+LLLSEDGLGYVLRHFPR FKYRGRGHEISDL
Sbjct: 61  PFSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDL 120

Query: 121 ENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAP 180
            NLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAP
Sbjct: 121 GNLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAP 180

Query: 181 ILNDDDVNNEKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDS 240
           ILNDDDVNNEKEAKDPEG+FD+ EEA LRNN ADDIEEDMLQEVYEKATE+P QN+QSDS
Sbjct: 181 ILNDDDVNNEKEAKDPEGIFDNQEEA-LRNNGADDIEEDMLQEVYEKATEEPSQNVQSDS 240

Query: 241 FTNGETM--VANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           FT GET+  VANQEP  SNSSETQLTEEQRGRMEANRLKALERAAAKARSLPTV
Sbjct: 241 FTIGETIEGVANQEPKISNSSETQLTEEQRGRMEANRLKALERAAAKARSLPTV 293

[Close]

BLAST of Clc02G18060 vs. NCBI nr
Match: XP_008456510.1 (PREDICTED: TIMELESS-interacting protein [Cucumis melo] >KAA0063565.1 TIMELESS-interacting protein [Cucumis melo var. makuwa] >TYJ97891.1 TIMELESS-interacting protein [Cucumis melo var. makuwa])

HSP 1 Score: 473.0 bits (1216), Expect = 1.8e-129
Identity = 256/289 (88.58%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDN A+AAPTGCYKCGKPGHWSRDCPSSA      PNPNPTSNSS PPFSSAPAAPSK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSA------PNPNPTSNSSKPPFSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
             EKPKK PRTRPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  AVEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN-DDDVNNE 180
           SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN DDDVNNE
Sbjct: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNE 180

Query: 181 KEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETM--V 240
           KEAKDPEGVFD+ EEASLRNN ADDIEEDMLQEVYEKATE+PLQN QSDS T G TM  V
Sbjct: 181 KEAKDPEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGV 240

Query: 241 ANQEPN----TSNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           ANQEPN    TSNSSET +LTEEQR RMEANRLKALERAAAKARSL TV
Sbjct: 241 ANQEPNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of Clc02G18060 vs. NCBI nr
Match: XP_004139395.1 (TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein Csa_019321 [Cucumis sativus])

HSP 1 Score: 467.6 bits (1202), Expect = 7.5e-128
Identity = 251/286 (87.76%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           MEKDN AV APTGC+KCGKPGHWSRDCPSSA      PNPNPTSNSSTP FSS PAAPSK
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSA------PNPNPTSNSSTPSFSSPPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
             EKPKK PRTRPKLTP+LLLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWH
Sbjct: 61  AVEKPKKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN  DDDVNN
Sbjct: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETM-- 240
           EKEAKDP+ VFD+ EEASLRNN ADDIEEDMLQEVYEKATE+PLQN QSDS T G TM  
Sbjct: 181 EKEAKDPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEG 240

Query: 241 VANQEPNTSNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           VANQEP TSNSSET +LTEEQR RMEANRLKALERAAAKARSLPTV
Sbjct: 241 VANQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV 280

[Close]

BLAST of Clc02G18060 vs. NCBI nr
Match: KAG6599343.1 (TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030333.1 TIMELESS-interacting protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 456.4 bits (1173), Expect = 1.7e-124
Identity = 241/285 (84.56%), Postives = 254/285 (89.12%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP          NSS PP SSAPAAPSK
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----------NSSRPPSSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
           +AEKPKK PR RPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  VAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYY FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NN
Sbjct: 121 SHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKAT-EKPLQNLQSDSFTNGETM- 240
           E EAKD EG+FD+ EEAS +NN ADDIEEDMLQEVYEKAT E+PL NLQSDSFT GETM 
Sbjct: 181 ENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETME 240

Query: 241 -VANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 281
            V NQEPNTSNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 GVVNQEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 275

[Close]

BLAST of Clc02G18060 vs. NCBI nr
Match: XP_022946681.1 (TIMELESS-interacting protein [Cucurbita moschata])

HSP 1 Score: 452.6 bits (1163), Expect = 2.5e-123
Identity = 239/286 (83.57%), Postives = 254/286 (88.81%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP          NSS+PP SSAPAAPSK
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----------NSSSPPSSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
           +AEKPKK PR RPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  VAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYY FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NN
Sbjct: 121 SHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKAT-EKPLQNLQSDSFTNGETM- 240
           E EAKD EG+FD+ EEAS +NN ADDIEEDMLQEVYEKAT E+PL NLQSDSFT GETM 
Sbjct: 181 ENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETME 240

Query: 241 --VANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 281
             V  +EPNTSNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 GVVNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

[Close]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot
Match: Q6DBR4 (TIMELESS-interacting protein OS=Danio rerio OX=7955 GN=tipin PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.7e-08
Identity = 64/224 (28.57%), Postives = 90/224 (40.18%), Query Frame = 0


Query: 59  SKIAEKPKKPPRT----RPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIG 118
           SK+AE P    RT    RPKL  + L+SE GL   LR      K++G+GHE  +L+ L+ 
Sbjct: 54  SKLAEVPVAKRRTVKRPRPKLDANRLISEKGLP-ALRTLFEDVKFKGKGHETENLKLLML 113

Query: 119 LYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDD 178
               W   + P   FE F+ KVE +   K V+ CL  +R             + PI ++D
Sbjct: 114 KMENWAHRLYPKMQFEEFIDKVENLGGKKEVQTCLKRIR------------LDMPITHED 173

Query: 179 DVNNEKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGE 238
            V  E E + PE                                         +S  +G+
Sbjct: 174 YVAEEAEIQVPE-----------------------------------------ESVPSGD 223

Query: 239 TMVANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSL 279
                     S  +   LTEEQ+ R+E N+  ALER  AK + L
Sbjct: 234 GGFPEDPFIHSTPAPASLTEEQQQRIELNKRLALERRLAKQKQL 223

[Close]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot
Match: Q3ZCC4 (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.0e-07
Identity = 66/240 (27.50%), Postives = 101/240 (42.08%), Query Frame = 0


Query: 32  PNPNPNPNPNPTSNSSTPPFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLGYVLR 91
           P P P          + P   S   AP  +  K +   R  PKL  + L+SE GL   LR
Sbjct: 25  PFPPPASPGREDGEGAEPEEESGRGAPVPVPPK-RTVKRNIPKLNAERLISERGLP-ALR 84

Query: 92  HFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGE 151
           H     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +   K V+ CL  
Sbjct: 85  HVFEKAKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKR 144

Query: 152 LRERVARGGDPTKWREAPILNDDDVNNEKEAKDPEG--------------VFDDLEEASL 211
           +R             + PIL++D V+N  E ++  G               +  +E AS 
Sbjct: 145 IR------------LDLPILHEDFVSNNDEVEENNGHDVTATELDHFLTNSYGSVEFASE 204

Query: 212 RNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETMVANQEPNTSNSSETQLTEEQR 258
            +    + E+  ++   + A E+    L S+S + G  +  N  P+T  S      EEQ+
Sbjct: 205 SSRSLTEEEQQRIERNKQLALERRQAKLLSNSQSLGNDLSVN-TPSTQTSEAGSTGEEQK 249

[Close]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot
Match: Q9BVW5 (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 2.3e-07
Identity = 70/247 (28.34%), Postives = 102/247 (41.30%), Query Frame = 0


Query: 32  PNPNPNPNPNPTSNSSTPPFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLGYVLR 91
           P P P          + P   S   AP ++  K +   R  PKL    L+SE GL   LR
Sbjct: 25  PFPPPASPERQDGEGTEPDEESGNGAPVRVPPK-RTVKRNIPKLDAQRLISERGLP-ALR 84

Query: 92  HFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGE 151
           H     K++G+GHE  DL+ LI     W   + P   FE F+ +VE + + K V+ CL  
Sbjct: 85  HVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKR 144

Query: 152 LRERVARGGDPTKWREAPILNDDDVNNEKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQ 211
           +R             + PIL++D V+N                        D++ E+   
Sbjct: 145 IR------------LDLPILHEDFVSNN-----------------------DEVAENNEH 204

Query: 212 EVYEKATEKPLQNL-QSDSFTNGETMVANQEPNTSNSSETQLTEEQRGRMEANRLKALER 271
           +V     +  L NL +S+ F              ++     LTEEQ+ R+E N+  ALER
Sbjct: 205 DVTSTELDPFLTNLSESEMF--------------ASELSRSLTEEQQQRIERNKQLALER 220

Query: 272 AAAKARS 278
             AK  S
Sbjct: 265 RQAKLLS 220

[Close]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot
Match: Q0IHI4 (TIMELESS-interacting protein OS=Xenopus laevis OX=8355 GN=tipin PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 6.8e-07
Identity = 51/214 (23.83%), Postives = 92/214 (42.99%), Query Frame = 0


Query: 43  TSNSSTPPFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGR 102
           T N+       AP    ++ ++P      +PKL    L S+ GL   LRH     K++G+
Sbjct: 48  TENAGQTQREEAPKPARRVVKRP------QPKLDGQRLASQRGLP-ALRHMFDDVKFKGK 107

Query: 103 GHEISDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDP 162
           GHE  DL+ L+     W   + P   FE F++++E +   K V+ CL ++R         
Sbjct: 108 GHETEDLKILLRQMENWAHRLFPKLQFEDFLNRLESMGNKKEVQTCLKKIR--------- 167

Query: 163 TKWREAPILNDDDVNNEKEAKDPEGVF----------DDLEEASLRNNCADDIEEDMLQE 222
               + PI++DD ++ E   +  +             D+L   S       D+ E+ LQ 
Sbjct: 168 ---MDLPIVHDDFLSEEVVVQTEDHAIDMPSEDFSFPDELHVPSPSQPVKVDLSEETLQR 227

Query: 223 VYEK---ATEKPLQNLQSDSFTNGETMVANQEPN 244
           +      A E+ ++ +Q+ + +   +     +PN
Sbjct: 228 IERNRRLALERRMEKMQAQAESQALSQATQSDPN 242

[Close]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot
Match: Q4QR88 (TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.9e-07
Identity = 66/247 (26.72%), Postives = 106/247 (42.91%), Query Frame = 0


Query: 28  PSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSKIAEKPKKPPRTRPKLTPDLLLSEDGLG 87
           P  +P  +P     P   S  P     P  P +I +      R  PKL    L SE GL 
Sbjct: 28  PPGSPERDP-AEAEPDEGSGAP----VPVPPKRIVK------RNIPKLDATRLTSERGLP 87

Query: 88  YVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKM 147
             LRH     K++G+GHE  DL+ LI     W   + P   FE F+ +VE +   K V+ 
Sbjct: 88  -ALRHVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQT 147

Query: 148 CLGELRERVARGGDPTKWREAPILNDDDVNNEKEAKDPEGV------FDDLEEAS----- 207
           CL  +R             + PI+++D VNN  E ++   +      FD    +S     
Sbjct: 148 CLKRIR------------LDLPIVHEDFVNNNDEVEETNSLDAAATGFDAFVTSSSDSKR 207

Query: 208 LRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETMVANQEPNTSNSSETQLTEEQ 264
             +  + ++ E+  Q + EK  +  L+  Q+   +N +++  +     S++ E Q  EE 
Sbjct: 208 FASEASRNLTEEQQQRI-EKNKQLALERRQAKLLSNSQSLENDVTVEESSTGENQ--EES 247

[Close]

BLAST of Clc02G18060 vs. ExPASy TrEMBL
Match: A0A5D3BGW4 (TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001060 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 8.6e-130
Identity = 256/289 (88.58%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDN A+AAPTGCYKCGKPGHWSRDCPSSA      PNPNPTSNSS PPFSSAPAAPSK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSA------PNPNPTSNSSKPPFSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
             EKPKK PRTRPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  AVEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN-DDDVNNE 180
           SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN DDDVNNE
Sbjct: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNE 180

Query: 181 KEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETM--V 240
           KEAKDPEGVFD+ EEASLRNN ADDIEEDMLQEVYEKATE+PLQN QSDS T G TM  V
Sbjct: 181 KEAKDPEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGV 240

Query: 241 ANQEPN----TSNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           ANQEPN    TSNSSET +LTEEQR RMEANRLKALERAAAKARSL TV
Sbjct: 241 ANQEPNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of Clc02G18060 vs. ExPASy TrEMBL
Match: A0A1S3C4P4 (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1)

HSP 1 Score: 473.0 bits (1216), Expect = 8.6e-130
Identity = 256/289 (88.58%), Postives = 262/289 (90.66%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDN A+AAPTGCYKCGKPGHWSRDCPSSA      PNPNPTSNSS PPFSSAPAAPSK
Sbjct: 1   MDKDNNAIAAPTGCYKCGKPGHWSRDCPSSA------PNPNPTSNSSKPPFSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
             EKPKK PRTRPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  AVEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN-DDDVNNE 180
           SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN DDDVNNE
Sbjct: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNE 180

Query: 181 KEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETM--V 240
           KEAKDPEGVFD+ EEASLRNN ADDIEEDMLQEVYEKATE+PLQN QSDS T G TM  V
Sbjct: 181 KEAKDPEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGV 240

Query: 241 ANQEPN----TSNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           ANQEPN    TSNSSET +LTEEQR RMEANRLKALERAAAKARSL TV
Sbjct: 241 ANQEPNQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLATV 283

[Close]

BLAST of Clc02G18060 vs. ExPASy TrEMBL
Match: A0A0A0LI96 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=3 SV=1)

HSP 1 Score: 467.6 bits (1202), Expect = 3.6e-128
Identity = 251/286 (87.76%), Postives = 259/286 (90.56%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           MEKDN AV APTGC+KCGKPGHWSRDCPSSA      PNPNPTSNSSTP FSS PAAPSK
Sbjct: 1   MEKDNNAVPAPTGCFKCGKPGHWSRDCPSSA------PNPNPTSNSSTPSFSSPPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
             EKPKK PRTRPKLTP+LLLS+DGLGYVLRHFPRAFKYRGRGHEI+DLENLIGLYREWH
Sbjct: 61  AVEKPKKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN  DDDVNN
Sbjct: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTNGETM-- 240
           EKEAKDP+ VFD+ EEASLRNN ADDIEEDMLQEVYEKATE+PLQN QSDS T G TM  
Sbjct: 181 EKEAKDPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEG 240

Query: 241 VANQEPNTSNSSET-QLTEEQRGRMEANRLKALERAAAKARSLPTV 282
           VANQEP TSNSSET +LTEEQR RMEANRLKALERAAAKARSLPTV
Sbjct: 241 VANQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPTV 280

[Close]

BLAST of Clc02G18060 vs. ExPASy TrEMBL
Match: A0A6J1G4B9 (TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.2e-123
Identity = 239/286 (83.57%), Postives = 254/286 (88.81%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP          NSS+PP SSAPAAPSK
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----------NSSSPPSSSAPAAPSK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
           +AEKPKK PR RPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  VAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYY FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NN
Sbjct: 121 SHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKAT-EKPLQNLQSDSFTNGETM- 240
           E EAKD EG+FD+ EEAS +NN ADDIEEDMLQEVYEKAT E+PL NLQSDSFT GETM 
Sbjct: 181 ENEAKDSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETME 240

Query: 241 --VANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 281
             V  +EPNTSNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 GVVNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

[Close]

BLAST of Clc02G18060 vs. ExPASy TrEMBL
Match: A0A6J1KG39 (TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 3.9e-122
Identity = 237/286 (82.87%), Postives = 252/286 (88.11%), Query Frame = 0


Query: 1   MEKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFSSAPAAPSK 60
           M+KDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP          N S PP SSAPAAP K
Sbjct: 1   MDKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----------NFSRPPSSSAPAAPPK 60

Query: 61  IAEKPKKPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120
           +AEKPKK PR RPKLTP+LLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH
Sbjct: 61  VAEKPKKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWH 120

Query: 121 SHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILN--DDDVNN 180
           SHILPYY FEHFVHKVEQVAATKRVKMCLGELRE+VARGGDPTKWRE+PI+N  DDD+NN
Sbjct: 121 SHILPYYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINN 180

Query: 181 EKEAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKAT-EKPLQNLQSDSFTNGET-- 240
           E EAKD EG+FD+ EEASL+NN ADDIEEDMLQEVYEKAT E+PL NLQSDSFT GET  
Sbjct: 181 ENEAKDSEGLFDNQEEASLKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETVE 240

Query: 241 -MVANQEPNTSNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 281
            +V  +EPNTSNS+ET LTE+QR RMEANRLKALERAAAKARS PT
Sbjct: 241 GVVNQEEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPT 276

[Close]

BLAST of Clc02G18060 vs. TAIR 10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 226.1 bits (575), Expect = 3.5e-59
Identity = 141/277 (50.90%), Postives = 180/277 (64.98%), Query Frame = 0


Query: 9   AAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSSTPPFS---SAPAAPSKIAEKP 68
           +APTGC+KCG+PGHWSRDCPSSAP    N   + ++ S  P      S+  + + IA  P
Sbjct: 3   SAPTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAPAP 62

Query: 69  K--KPPRTRPKLTPDLLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHI 128
           K  K    RPKLTP+LLLSEDGLGYVLR+FP++FKYRGRG E+SDL NLI LY EWH+H+
Sbjct: 63  KVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTHL 122

Query: 129 LPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKW---REAPILNDDDVNNEK 188
           LPYYSF+HFVHKV+QVA+TKRVK C+ ELRERVA G DP K    +E   +  DD + ++
Sbjct: 123 LPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMDQ 182

Query: 189 EAKDPEGVFDDLEEASLRNNCADDIEEDMLQEVYEKATEKPLQNLQSDSFTN-GETMVAN 248
            + D E +     +A      AD  E+ ML E+++ A++ P      D  +   E   A 
Sbjct: 183 PSHDEENIPSKSVDADTN---ADAFEDSMLNEIFDNASKLPSDEQNMDKSSELTEEQRAR 242

Query: 249 QEPNTSNSSE--TQLTEEQRGRMEANRLKALERAAAK 275
            E N   + E    ++EEQR RMEANRLKALERA A+
Sbjct: 243 MEANRLKAMEKAQNISEEQRVRMEANRLKALERAKAR 276

[Close]

BLAST of Clc02G18060 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 42.4 bits (98), Expect = 7.2e-04
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 0


Query: 7   AVAAPTGCYKCGKPGHWSRDCPSSAPNPNPNPNPNPTSNSS 48
           + +A   C+KCGKPGHWSRDC + + NP   P    +S+SS
Sbjct: 263 STSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSS 303

The following BLAST results are available for this feature:

BLAST of Clc02G18060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889611.1	8.8e-137	89.12	TIMELESS-interacting protein [Benincasa hispida]	[more]
XP_008456510.1	1.8e-129	88.58	PREDICTED: TIMELESS-interacting protein [Cucumis melo] >KAA0063565.1 TIMELESS-in...	[more]
XP_004139395.1	7.5e-128	87.76	TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein ...	[more]
KAG6599343.1	1.7e-124	84.56	TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022946681.1	2.5e-123	83.57	TIMELESS-interacting protein [Cucurbita moschata]	[more]

BLAST of Clc02G18060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6DBR4	4.7e-08	28.57	TIMELESS-interacting protein OS=Danio rerio OX=7955 GN=tipin PE=2 SV=1	[more]
Q3ZCC4	1.0e-07	27.50	TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1	[more]
Q9BVW5	2.3e-07	28.34	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]
Q0IHI4	6.8e-07	23.83	TIMELESS-interacting protein OS=Xenopus laevis OX=8355 GN=tipin PE=1 SV=1	[more]
Q4QR88	8.9e-07	26.72	TIMELESS-interacting protein OS=Rattus norvegicus OX=10116 GN=Tipin PE=2 SV=1	[more]

BLAST of Clc02G18060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGW4	8.6e-130	88.58	TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C4P4	8.6e-130	88.58	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1	[more]
A0A0A0LI96	3.6e-128	87.76	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 P...	[more]
A0A6J1G4B9	1.2e-123	83.57	TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 ...	[more]
A0A6J1KG39	3.9e-122	82.87	TIMELESS-interacting protein OS=Cucurbita maxima OX=3661 GN=LOC111493575 PE=3 SV...	[more]

BLAST of Clc02G18060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02820.1	3.5e-59	50.90	zinc knuckle (CCHC-type) family protein	[more]
AT3G42860.1	7.2e-04	48.78	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 13..29 e-value: 7.4E-7 score: 38.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 13..29 e-value: 1.5E-8 score: 34.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 14..29 score: 11.581206
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 74..155 e-value: 2.3E-23 score: 82.0
None	No IPR available	GENE3D	4.10.60.10		coord: 10..74 e-value: 8.7E-10 score: 40.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..253
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 235..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	PANTHER	PTHR13220:SF11	TIMELESS-INTERACTING PROTEIN	coord: 9..276
IPR040038	TIPIN/Csm3/Swi3	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 9..276
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 11..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G18060.1	Clc02G18060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0043111	replication fork arrest
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0016020	membrane
cellular_component	GO:0031298	replication fork protection complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding