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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGTAGAAGTAGAAATGTGGATCCAAGAGATTGAGGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA mRNA sequence ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA Coding sequence (CDS) ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA Protein sequence MLNPQKDPMHHKKKRGKEREAPESKCGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE
Homology
BLAST of Clc02G17470 vs. NCBI nr
Match: KGN60824.1 (hypothetical protein Csa_019365 [Cucumis sativus]) HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 26 CGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE 85
C ++ + +NRV+RVTKETRNDTVFE EGRQTEA AEEEED+EGLSPLLGFWFK QKER+
Sbjct: 2 CKKKRRNKNRVLRVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60
BLAST of Clc02G17470 vs. ExPASy TrEMBL
Match: A0A0A0LIE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16 Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0
Query: 26 CGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE 85
C ++ + +NRV+RVTKETRNDTVFE EGRQTEA AEEEED+EGLSPLLGFWFK QKER+
Sbjct: 2 CKKKRRNKNRVLRVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KGN60824.1 | 5.1e-16 | 77.97 | hypothetical protein Csa_019365 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LIE9 | 2.5e-16 | 77.97 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..70 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..51 |
Relationships
The following mRNA feature(s) are a part of this gene:
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