Clc02G17470 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc02G17470
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr02: 30040274 .. 30040561 (-)
RNA-Seq Expression	Clc02G17470
Synteny	Clc02G17470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGTAGAAGTAGAAATGTGGATCCAAGAGATTGAGGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA

mRNA sequence

ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA

Coding sequence (CDS)

ATGTTAAACCCCCAAAAAGATCCAATGCACCACAAGAAAAAGAGAGGAAAAGAAAGAGAAGCACCTGAAAGCAAATGTGGTAGAAGAGAGAAGAAACAAAACAGGGTTATGAGAGTTACAAAGGAGACAAGGAACGACACCGTTTTCGAAGCAGAAGGAAGACAAACAGAAGCTGCAGCTGAAGAGGAAGAAGATAGTGAAGGGCTTTCTCCATTGTTGGGATTTTGGTTCAAAGTTCAGAAAGAAAGAGAGTAA

Protein sequence

MLNPQKDPMHHKKKRGKEREAPESKCGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE

Homology

[Close]

BLAST of Clc02G17470 vs. NCBI nr
Match: KGN60824.1 (hypothetical protein Csa_019365 [Cucumis sativus])

HSP 1 Score: 94.4 bits (233), Expect = 5.1e-16
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 26 CGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE 85
          C ++ + +NRV+RVTKETRNDTVFE EGRQTEA AEEEED+EGLSPLLGFWFK QKER+
Sbjct: 2  CKKKRRNKNRVLRVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60

[Close]

BLAST of Clc02G17470 vs. ExPASy TrEMBL
Match: A0A0A0LIE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.5e-16
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 26 CGRREKKQNRVMRVTKETRNDTVFEAEGRQTEAAAEEEEDSEGLSPLLGFWFKVQKERE 85
          C ++ + +NRV+RVTKETRNDTVFE EGRQTEA AEEEED+EGLSPLLGFWFK QKER+
Sbjct: 2  CKKKRRNKNRVLRVTKETRNDTVFEEEGRQTEAEAEEEEDNEGLSPLLGFWFKAQKERK 60

The following BLAST results are available for this feature:

BLAST of Clc02G17470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN60824.1	5.1e-16	77.97	hypothetical protein Csa_019365 [Cucumis sativus]	[more]

BLAST of Clc02G17470 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc02G17470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIE9	2.5e-16	77.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G011570 PE=4 SV=1	[more]

BLAST of Clc02G17470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..70
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc02G17470.2	Clc02G17470.2	mRNA