Clc02G17020 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA MFIIFQFWYDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSSFREGKQIPLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNGLVQLQENLLYEILKEDLSVLRRC Homology
BLAST of Clc02G17020 vs. NCBI nr
Match: XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida]) HSP 1 Score: 137.5 bits (345), Expect = 9.6e-29 Identity = 81/141 (57.45%), Postives = 96/141 (68.09%), Query Frame = 0
BLAST of Clc02G17020 vs. NCBI nr
Match: KAA0047974.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa]) HSP 1 Score: 135.6 bits (340), Expect = 3.7e-28 Identity = 81/144 (56.25%), Postives = 95/144 (65.97%), Query Frame = 0
BLAST of Clc02G17020 vs. NCBI nr
Match: TYK18302.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa]) HSP 1 Score: 135.2 bits (339), Expect = 4.8e-28 Identity = 80/144 (55.56%), Postives = 96/144 (66.67%), Query Frame = 0
BLAST of Clc02G17020 vs. NCBI nr
Match: TYK18296.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa]) HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27 Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 0
BLAST of Clc02G17020 vs. NCBI nr
Match: XP_016901470.1 (PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis melo]) HSP 1 Score: 132.1 bits (331), Expect = 4.1e-27 Identity = 79/141 (56.03%), Postives = 89/141 (63.12%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy Swiss-Prot
Match: Q40253 (Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1) HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04 Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5A7TY73 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00360 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28 Identity = 81/144 (56.25%), Postives = 95/144 (65.97%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5D3D440 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00080 PE=4 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28 Identity = 80/144 (55.56%), Postives = 96/144 (66.67%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5D3D432 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00020 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27 Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A1S4E0G6 (LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=3656 GN=LOC103499468 PE=4 SV=1) HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27 Identity = 79/141 (56.03%), Postives = 89/141 (63.12%), Query Frame = 0
BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: E5GB34 (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1) HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27 Identity = 81/148 (54.73%), Postives = 90/148 (60.81%), Query Frame = 0
BLAST of Clc02G17020 vs. TAIR 10
Match: AT1G27170.1 (transmembrane receptors;ATP binding ) HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05 Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 0
BLAST of Clc02G17020 vs. TAIR 10
Match: AT1G27170.2 (transmembrane receptors;ATP binding ) HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05 Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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