Clc02G17020 (gene) Watermelon (cordophanus) v2

Overview
NameClc02G17020
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDisease resistance protein RPP4-like
LocationClcChr02: 29546654 .. 29547115 (-)
RNA-Seq ExpressionClc02G17020
SyntenyClc02G17020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA

mRNA sequence

ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA

Coding sequence (CDS)

ATGTTCATCATCTTTCAATTTTGGTACGATTATGTACTTAACAATAGGAAGAATGTTGATCTTATTCAAGATCTTGTTAAAGAAGTGTTATCAATATTAAATCGCACCTGCACACCCTTATATATAGCGAAAGCGAAGTATCCAGTTGGAATTGGTTCTCAACTAGAAGTTTCGTTCACATCATCTTTTCGAGAAGGGAAACAAATTCCATTATTGGACACACAACATGAGATGAGTCTGATATTGGTGTTTACATGGTGGGGATATATGGTATTGGAGGCCTTGGTAAGACAACTTTGGCTAAAGCTTTTATACAACAAAATTGCTACCCAATTTGAAGGTTGCTGCTTTCTATCGAATGTTAGAGAAGCTTTAAAGCAATTCAATGGCCTTGTTCAACTACAGGAAAACCTGCTCTATGAGATCTTAAAGGAAGATTTGAGTGTGCTGAGAAGATGTTGA

Protein sequence

MFIIFQFWYDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSSFREGKQIPLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNGLVQLQENLLYEILKEDLSVLRRC
Homology
BLAST of Clc02G17020 vs. NCBI nr
Match: XP_038877835.1 (LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida])

HSP 1 Score: 137.5 bits (345), Expect = 9.6e-29
Identity = 81/141 (57.45%), Postives = 96/141 (68.09%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSS--FREGKQI 72
           L  RK  DLI+D+VKEVLSILN TCTPL +  AKYPVGI S+LE + F S   F +G + 
Sbjct: 156 LGTRKEADLIRDIVKEVLSILNHTCTPLNV--AKYPVGIDSKLEYMKFCSRYFFEKGNKF 215

Query: 73  PLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFN 132
               TQH+          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFN
Sbjct: 216 H-YQTQHKYESDTGVYMMGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFN 275

Query: 133 GLVQLQENLLYEILKEDLSVL 151
           GLVQLQE+LLYEILK+DL V+
Sbjct: 276 GLVQLQESLLYEILKDDLKVV 293

BLAST of Clc02G17020 vs. NCBI nr
Match: KAA0047974.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa])

HSP 1 Score: 135.6 bits (340), Expect = 3.7e-28
Identity = 81/144 (56.25%), Postives = 95/144 (65.97%), Query Frame = 0

Query: 9   YDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGK 68
           YDY LNN+K  DLI DLVK+VLS LNRTCT LY+  AKYPV I S+LE +   S    GK
Sbjct: 172 YDYALNNKKEADLIGDLVKKVLSTLNRTCTLLYV--AKYPVEIDSKLEYMKLRSHNLFGK 231

Query: 69  QIPL-LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALK 128
                  TQHE    +     G  V+  + +    K LYNKIA+QFEGCCFLSNV+EA K
Sbjct: 232 SNKFHYWTQHEYEFDIGVYLVGIYVIGGIGKTTLAKALYNKIASQFEGCCFLSNVKEASK 291

Query: 129 QFNGLVQLQENLLYEILKEDLSVL 151
           QF+GL QLQE+LLYEIL  DL V+
Sbjct: 292 QFDGLAQLQESLLYEILTVDLKVV 313

BLAST of Clc02G17020 vs. NCBI nr
Match: TYK18302.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 4.8e-28
Identity = 80/144 (55.56%), Postives = 96/144 (66.67%), Query Frame = 0

Query: 9   YDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGK 68
           YDY LNN+K+ DLI DLVK+VLS LNRTCT LY+  AKYPV I S+LE +   S    GK
Sbjct: 215 YDYALNNKKDADLIGDLVKKVLSTLNRTCTLLYV--AKYPVEIDSKLEYMKLRSHNLFGK 274

Query: 69  QIPL-LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALK 128
                  TQHE    +     G  V+  + +    K LYNKIA+QFEGCCFLSNV+EA K
Sbjct: 275 SNKFHYWTQHEYEFDIGVYLVGIYVIGGIGKTTLAKALYNKIASQFEGCCFLSNVKEASK 334

Query: 129 QFNGLVQLQENLLYEILKEDLSVL 151
           QF+GL QLQE+LLYEI+  DL V+
Sbjct: 335 QFDGLAQLQESLLYEIITVDLKVV 356

BLAST of Clc02G17020 vs. NCBI nr
Match: TYK18296.1 (disease resistance protein RPP4-like [Cucumis melo var. makuwa])

HSP 1 Score: 132.9 bits (333), Expect = 2.4e-27
Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGKQIPL 72
           L  RK  DLI DLVK+VLS LNRTCTPLY+  AKYPVGI S LE +   S    GK   L
Sbjct: 157 LGTRKEADLIGDLVKKVLSTLNRTCTPLYV--AKYPVGIDSNLEYMKLRSHNLFGKSNKL 216

Query: 73  -LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNG 132
             +TQHE          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFNG
Sbjct: 217 HYETQHEYEFDTSVYMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNG 276

Query: 133 LVQLQENLLYEILKEDLSVL 151
           L QLQE+LLYEIL   L V+
Sbjct: 277 LAQLQESLLYEILMVHLKVI 294

BLAST of Clc02G17020 vs. NCBI nr
Match: XP_016901470.1 (PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 4.1e-27
Identity = 79/141 (56.03%), Postives = 89/141 (63.12%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSS---FREGKQI 72
           L  RK  DLI DLVK VLS LNRTCTPLY+  AKYPVGI S+LE     S   F +  + 
Sbjct: 179 LGTRKEADLIGDLVKNVLSTLNRTCTPLYV--AKYPVGIDSKLEYMKLQSHNLFEKSNKF 238

Query: 73  PLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFN 132
               TQHE          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFN
Sbjct: 239 H-YQTQHEYEFDTGVYLVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFN 298

Query: 133 GLVQLQENLLYEILKEDLSVL 151
           GL QLQE+LLYEIL  DL V+
Sbjct: 299 GLAQLQESLLYEILTVDLKVV 316

BLAST of Clc02G17020 vs. ExPASy Swiss-Prot
Match: Q40253 (Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 6.5e-04
Identity = 21/45 (46.67%), Postives = 34/45 (75.56%), Query Frame = 0

Query: 102 KLLYNKIATQFEGCCFLSNVREALKQFNGLVQLQENLLYEILKED 147
           K +YNKI++ F+ CCF+ N+RE  ++ +G+V LQ+ L+ EIL+ D
Sbjct: 276 KAVYNKISSCFDCCCFIDNIRET-QEKDGVVVLQKKLVSEILRID 319

BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5A7TY73 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00360 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.8e-28
Identity = 81/144 (56.25%), Postives = 95/144 (65.97%), Query Frame = 0

Query: 9   YDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGK 68
           YDY LNN+K  DLI DLVK+VLS LNRTCT LY+  AKYPV I S+LE +   S    GK
Sbjct: 172 YDYALNNKKEADLIGDLVKKVLSTLNRTCTLLYV--AKYPVEIDSKLEYMKLRSHNLFGK 231

Query: 69  QIPL-LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALK 128
                  TQHE    +     G  V+  + +    K LYNKIA+QFEGCCFLSNV+EA K
Sbjct: 232 SNKFHYWTQHEYEFDIGVYLVGIYVIGGIGKTTLAKALYNKIASQFEGCCFLSNVKEASK 291

Query: 129 QFNGLVQLQENLLYEILKEDLSVL 151
           QF+GL QLQE+LLYEIL  DL V+
Sbjct: 292 QFDGLAQLQESLLYEILTVDLKVV 313

BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5D3D440 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00080 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.3e-28
Identity = 80/144 (55.56%), Postives = 96/144 (66.67%), Query Frame = 0

Query: 9   YDYVLNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGK 68
           YDY LNN+K+ DLI DLVK+VLS LNRTCT LY+  AKYPV I S+LE +   S    GK
Sbjct: 215 YDYALNNKKDADLIGDLVKKVLSTLNRTCTLLYV--AKYPVEIDSKLEYMKLRSHNLFGK 274

Query: 69  QIPL-LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALK 128
                  TQHE    +     G  V+  + +    K LYNKIA+QFEGCCFLSNV+EA K
Sbjct: 275 SNKFHYWTQHEYEFDIGVYLVGIYVIGGIGKTTLAKALYNKIASQFEGCCFLSNVKEASK 334

Query: 129 QFNGLVQLQENLLYEILKEDLSVL 151
           QF+GL QLQE+LLYEI+  DL V+
Sbjct: 335 QFDGLAQLQESLLYEIITVDLKVV 356

BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A5D3D432 (Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G00020 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 80/140 (57.14%), Postives = 90/140 (64.29%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLE-VSFTSSFREGKQIPL 72
           L  RK  DLI DLVK+VLS LNRTCTPLY+  AKYPVGI S LE +   S    GK   L
Sbjct: 157 LGTRKEADLIGDLVKKVLSTLNRTCTPLYV--AKYPVGIDSNLEYMKLRSHNLFGKSNKL 216

Query: 73  -LDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNG 132
             +TQHE          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFNG
Sbjct: 217 HYETQHEYEFDTSVYMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNG 276

Query: 133 LVQLQENLLYEILKEDLSVL 151
           L QLQE+LLYEIL   L V+
Sbjct: 277 LAQLQESLLYEILMVHLKVI 294

BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: A0A1S4E0G6 (LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=3656 GN=LOC103499468 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 79/141 (56.03%), Postives = 89/141 (63.12%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSS---FREGKQI 72
           L  RK  DLI DLVK VLS LNRTCTPLY+  AKYPVGI S+LE     S   F +  + 
Sbjct: 179 LGTRKEADLIGDLVKNVLSTLNRTCTPLYV--AKYPVGIDSKLEYMKLQSHNLFEKSNKF 238

Query: 73  PLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFN 132
               TQHE          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFN
Sbjct: 239 H-YQTQHEYEFDTGVYLVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFN 298

Query: 133 GLVQLQENLLYEILKEDLSVL 151
           GL QLQE+LLYEIL  DL V+
Sbjct: 299 GLAQLQESLLYEILTVDLKVV 316

BLAST of Clc02G17020 vs. ExPASy TrEMBL
Match: E5GB34 (TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.4e-27
Identity = 81/148 (54.73%), Postives = 90/148 (60.81%), Query Frame = 0

Query: 13  LNNRKNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSS---FREGKQI 72
           L  RK  DLI DLVK VLS LNRTCTPLY+  AKYPVGI S+LE     S   F +  + 
Sbjct: 154 LGTRKEADLIGDLVKNVLSTLNRTCTPLYV--AKYPVGIDSKLEYMKLQSHNLFEKSNKF 213

Query: 73  PLLDTQHEMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFN 132
               TQHE          G   +  + +    K LYNKIA+QFEGCCFLSNVREA KQFN
Sbjct: 214 H-YQTQHEYEFDTGVYLVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFN 273

Query: 133 GLVQLQENLLYEILKEDLS----VLRRC 154
           GL QLQE+LLYEIL  DL     VL  C
Sbjct: 274 GLAQLQESLLYEILTVDLKRKMRVLSEC 298

BLAST of Clc02G17020 vs. TAIR 10
Match: AT1G27170.1 (transmembrane receptors;ATP binding )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 0

Query: 17  KNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSSFREGKQIPLLDTQH 76
           K+ D+I+ +VK VL+ L+ T   +     ++ VG+ S L+              L+DT+ 
Sbjct: 162 KDDDMIELVVKRVLAELSNTPEKV----GEFIVGLESPLK----------DLTGLIDTES 221

Query: 77  EMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNGLVQLQE 136
              + ++    G   +  + +    K  YNKI   FE   F+S++RE     NGLV LQ+
Sbjct: 222 SSGVQVL----GLYGMGGIGKTTLAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQK 281

Query: 137 NLLYEILK-----EDLSV 150
            L+ E+ +     ED+S+
Sbjct: 282 TLIKELFRLVPEIEDVSI 281

BLAST of Clc02G17020 vs. TAIR 10
Match: AT1G27170.2 (transmembrane receptors;ATP binding )

HSP 1 Score: 45.1 bits (105), Expect = 6.1e-05
Identity = 39/138 (28.26%), Postives = 67/138 (48.55%), Query Frame = 0

Query: 17  KNVDLIQDLVKEVLSILNRTCTPLYIAKAKYPVGIGSQLEVSFTSSFREGKQIPLLDTQH 76
           K+ D+I+ +VK VL+ L+ T   +     ++ VG+ S L+              L+DT+ 
Sbjct: 162 KDDDMIELVVKRVLAELSNTPEKV----GEFIVGLESPLK----------DLTGLIDTES 221

Query: 77  EMSLILVFTWWGYMVLEALVRQLWLKLLYNKIATQFEGCCFLSNVREALKQFNGLVQLQE 136
              + ++    G   +  + +    K  YNKI   FE   F+S++RE     NGLV LQ+
Sbjct: 222 SSGVQVL----GLYGMGGIGKTTLAKAFYNKIVGNFEQRAFISDIRERSSAENGLVTLQK 281

Query: 137 NLLYEILK-----EDLSV 150
            L+ E+ +     ED+S+
Sbjct: 282 TLIKELFRLVPEIEDVSI 281

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038877835.19.6e-2957.45LOW QUALITY PROTEIN: TMV resistance protein N-like [Benincasa hispida][more]
KAA0047974.13.7e-2856.25disease resistance protein RPP4-like [Cucumis melo var. makuwa][more]
TYK18302.14.8e-2855.56disease resistance protein RPP4-like [Cucumis melo var. makuwa][more]
TYK18296.12.4e-2757.14disease resistance protein RPP4-like [Cucumis melo var. makuwa][more]
XP_016901470.14.1e-2756.03PREDICTED: LOW QUALITY PROTEIN: disease resistance protein RPP4-like [Cucumis me... [more]
Match NameE-valueIdentityDescription
Q402536.5e-0446.67Disease resistance protein L6 OS=Linum usitatissimum OX=4006 GN=L6 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7TY731.8e-2856.25Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3D4402.3e-2855.56Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3D4321.1e-2757.14Disease resistance protein RPP4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S4E0G62.0e-2756.03LOW QUALITY PROTEIN: disease resistance protein RPP4-like OS=Cucumis melo OX=365... [more]
E5GB344.4e-2754.73TIR-NBS-LRR disease resistance protein OS=Cucumis melo subsp. melo OX=412675 PE=... [more]
Match NameE-valueIdentityDescription
AT1G27170.16.1e-0528.26transmembrane receptors;ATP binding [more]
AT1G27170.26.1e-0528.26transmembrane receptors;ATP binding [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc02G17020.1Clc02G17020.1mRNA